Lag0019037 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019037
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTetratricopeptide-like helical
Locationchr5: 37878020 .. 37878415 (+)
RNA-Seq ExpressionLag0019037
SyntenyLag0019037
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCTAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAATGAAATGGAGAACGACGTTCCGCCGCATTTGTTAGCAGAGGAAGAGGAAGACGACGATGACGAAAACATAACGAGCACTGCGAGTAACGACTATGAGTTTCCGGCCACCGGATTCTTTGGCAGCTGGCGCCGGAAAGATGGCGGAGCTGATGGTGTCCATTGCATCTCGGGCATGTTGTTCTGTTTGAGGAGAAGCATAGAGAAGAAGGCTTCTAATGGGGTGAGCTCTGTGAGAATAATGGTGAGAACTATTGTAGGGTTTCTGATGGTGATGGCCATGAAGATAATTAGTGCTCAAAGATCCAAGTTGTGA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCTAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAATGAAATGGAGAACGACGTTCCGCCGCATTTGTTAGCAGAGGAAGAGGAAGACGACGATGACGAAAACATAACGAGCACTGCGAGTAACGACTATGAGTTTCCGGCCACCGGATTCTTTGGCAGCTGGCGCCGGAAAGATGGCGGAGCTGATGGTGTCCATTGCATCTCGGGCATGTTGTTCTGTTTGAGGAGAAGCATAGAGAAGAAGGCTTCTAATGGGGTGAGCTCTGTGAGAATAATGGTGAGAACTATTGTAGGGTTTCTGATGGTGATGGCCATGAAGATAATTAGTGCTCAAAGATCCAAGTTGTGA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCTAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAATGAAATGGAGAACGACGTTCCGCCGCATTTGTTAGCAGAGGAAGAGGAAGACGACGATGACGAAAACATAACGAGCACTGCGAGTAACGACTATGAGTTTCCGGCCACCGGATTCTTTGGCAGCTGGCGCCGGAAAGATGGCGGAGCTGATGGTGTCCATTGCATCTCGGGCATGTTGTTCTGTTTGAGGAGAAGCATAGAGAAGAAGGCTTCTAATGGGGTGAGCTCTGTGAGAATAATGGTGAGAACTATTGTAGGGTTTCTGATGGTGATGGCCATGAAGATAATTAGTGCTCAAAGATCCAAGTTGTGA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENITSTASNDYEFPATGFFGSWRRKDGGADGVHCISGMLFCLRRSIEKKASNGVSSVRIMVRTIVGFLMVMAMKIISAQRSKL
Homology
BLAST of Lag0019037 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-41
Identity = 93/131 (70.99%), Postives = 109/131 (83.21%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENITSTASNDYE 60
           MSVSLEALAMAGI SNEWAMDAEEWERNE+ENDVPPHLLA  +EDDDD+N+TST SN Y 
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLA--DEDDDDDNVTSTVSN-YS 60

Query: 61  FPATGFFGSWRRKDGGADGVHCISGMLFCLRRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           FP  GFF S  R+DGGAD +HC  G+L  L +S+EK+ASNG+SSVRI+VRTI+GFL+V  
Sbjct: 61  FPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKI 120

Query: 121 MKIISAQRSKL 132
           +KIISA  S +
Sbjct: 121 LKIISAHTSNM 128

BLAST of Lag0019037 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 93/131 (70.99%), Postives = 109/131 (83.21%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENITSTASNDYE 60
           MSVSLEALAMAGI SNEWAMDAEEWERNE+ENDVPPHLLA  +EDDDD+N+TST SN Y 
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLA--DEDDDDDNVTSTVSN-YS 60

Query: 61  FPATGFFGSWRRKDGGADGVHCISGMLFCLRRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           FP  GFF S RR+DGGA  +HC  G+L  L +S+EK+ASNG+SSVRI+VRTI+GFL+V  
Sbjct: 61  FPVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKI 120

Query: 121 MKIISAQRSKL 132
           +KIISA  S +
Sbjct: 121 LKIISAHTSNM 128

BLAST of Lag0019037 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36
Identity = 90/131 (68.70%), Postives = 107/131 (81.68%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENITSTASNDYE 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E +TST SN Y 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISN-YC 60

Query: 61  FPATGFFGSWRRKDGGADGVHCISGMLFCLRRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           F   G FG WRR+D  ADG   I G+ + L + IEK+ASNG++SVRI+VRTI+GFLMVM 
Sbjct: 61  FRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 120

Query: 121 MKIISAQRSKL 132
           MKIISAQRSK+
Sbjct: 121 MKIISAQRSKM 129

BLAST of Lag0019037 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 9.4e-33
Identity = 81/119 (68.07%), Postives = 97/119 (81.51%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENITSTASNDYE 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E +TST SN Y 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISN-YC 60

Query: 61  FPATGFFGSWRRKDGGADGVHCISGMLFCLRRSIEKKASNGVSSVRIMVRTIVGFLMVM 120
           F   G FG WRR+D  ADG H I G+ + L + IEK+ASNG++SVRI+VRTI+GFLMVM
Sbjct: 61  FRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVM 117

BLAST of Lag0019037 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-26
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENITSTASNDYE 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNEME D+PPHLLA+E   DD+E+  ST     +
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADE---DDEEDEMST-----K 60

Query: 61  FPATGFFGSWRRKDGGADGVHCISGMLFCLRRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           FPAT    S  RKD G  GV C   +++ LR+  EK+  N +SS+ I+   +VGFLM M 
Sbjct: 61  FPATRC--SCCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMT 120

Query: 121 MKIISAQRSK 131
           +KII+++RSK
Sbjct: 121 IKIIASKRSK 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7015383.17.2e-4170.99hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.11.2e-4070.99hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK16880.11.1e-3668.70Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
KAA0044707.19.4e-3368.07Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
XP_022943015.13.8e-2658.46uncharacterized protein LOC111447880 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019037.1Lag0019037.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane