Lag0018986 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018986
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ATP-dependent RNA helicase DEAH12, chloroplastic-like
Location	chr5: 37369614 .. 37371761 (+)
RNA-Seq Expression	Lag0018986
Synteny	Lag0018986

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGTGGTTCAGCTGAGAGGTCTAATGATGCAGATGCTTGTCCAATTTGCTTATGTGACATTGAAGACGACAGGTTTGAACTTGAAGCTTGTGGACACCATTTTTGCCGACTCTGCCTTGTGGAGCAGTTTGAGTCCGCCATAAAAAACCAGGGAAGCTTCCCAGTATGTTGTGCTAAACAAACATGCCGGTCTCCTATTTTACTTACGGATATGAGATCTCTGTTGTCAAGCGAGAAGATAGAGGAACTGTTTCGAGCTTCATTGGGAGCTTTTGTTGCTTCTAGCGACGGTGCCTATAGGTTTTGCCCATCTCCTGACTGCCCCTCAGTTTACCGAGTGGCCAGCCCCGATACGTCTGGTGAACCATTCATGTGTGGAGCATGCTACTCAGAAACTTGTACAAGGTGCCATTTGGAGTATCATCCATTCCTATCATGCGAACAGTACCAAGTATTCAAGGAAGACCCTGATTCGTCACTGAATGAGTGGCGTAAAGATAAGGAGAATGTCAAGAACTGCCCTGTTTGCGGGTACACGATCGAGAAGATAGATGGGTGCAACCACATTGAATGTAGGTGTGGAAGGCATATTTGTTGGGTTTGTTTGGAATATTTTGATAGCAGTGATGAATGCTATGGCCATTTGAGGGTAATTCATATGGCCATCGTTTGAGCCTTTTACTTTTGTGAATCAATATGTATAAATGAATTATTAGGTTATTAGGCGTAAATAATACACAGGGTCCCATCTCACCCCAATGTGAAGGCAATGGCTTTAGGCATTAGTATGACATAATGTATATAATTATAAAATATACATATGCAGGCATTTTCCCTTGTTTTTCAAGTAATATAAAGTGTAAATTATCATATAGTTTTTTGATATGAATTTTCTTTTCCAACTGGTGTTCTCGATTTCTACTTTCTTCTTTATTTATTGGTATAGCTTTCTATGTGTTTGTAAGAACTTGAAACCCTAGAAAAGGGTTTTAGATACAAACAGTTTTTTCAGCTTTCCTGGGAGGAAGAAGAACGGGGGAAGAAAGAAATGAGTGGAGCAGGGGCACCTGATTTCTTCTACAGAGAGGCTCAACGCCTTGGGTATGTCGCAAGATCCGCCTTCAAGGTAAAAACCCTTCCCCTCGCTGATTTTCCTCCTTCTTATGACCTTGGAGCCTCGCCACTCCTAATTAAATATCTTAATTCTCTTGTACTGAGAACAGTTGCTTCAGATTCAAAAGCAATTCAAGTTGATTAATTCAGGCTCGTCCGTTTTGGACCTTGGTTGTGCTCCCAGTGCCTGGCTTCAGGTCTGAATATGAATCTTTCACCTCCATTCGACAAACTCTTTTGTGTCCTTTTGACTTCCAAAATATTTCTTTTCTGGTGGAATGTGTGAACCATGGCATTTGATTTCAGGTAGCTTGCCAGAGGCCCAATGGAGGGCTCTGTTTTGGGTATTGATCTCAAGGTGAAATATTTGACTTCTTGTGGGTTTCTCAGTTATGCTTTCTGCTGAATCTCATTTTTCAGAAAGTAATAATATGTAAAAGAAAATGTGGGTGTTGCAGAACAGAAGGTAAAGGTTCCTCATGTGCATTGTGACTCAAGGGTTCAAACTGTTTGTGCTGATGTAATGAACCTTCCCAAAAACAAATTGAAGGCACTATCTCCTAGGGTAACTCAACTTATCAAAAGTAGGAAATGTCTTGTAGCATTAATTTATTTTTACCAATGTCATTAACATTGAATGTTGTATCATTCATGAACATTGCTCAATTTGGTACATTGGTAACATTCCTGAACAACAATGCTTTCTTCTCTTTGATTGACGTTAAACATATCGATAACATTCAATGGTAGTGCAATATTTGTGCAATGATTTGGTTTAGGGGATCTGATATTTGCTCTGTATCTTAAAAAAATTGAAGTTTGTCAAACAAAAATACATAAACATCACCAGTAGAGATGCGACTTTATCAGTTTTTCATTAGGGATGCAAGCAGTTAACTTGGCTATTGGAGAAGCCGCGTTAGGTGTTGGTGATGATGTTATGCATGGAAAGGGCAAGGACAATGCGGATGATTCAACTTCAGTTGCAGATTATTATGATGGTGTGCTGCAAAAAGGAGGTAGAGAGTGA

mRNA sequence

ATGAGTGGTGGTTCAGCTGAGAGGTCTAATGATGCAGATGCTTGTCCAATTTGCTTATGTGACATTGAAGACGACAGGTTTGAACTTGAAGCTTGTGGACACCATTTTTGCCGACTCTGCCTTGTGGAGCAGTTTGAGTCCGCCATAAAAAACCAGGGAAGCTTCCCAGTATGTTGTGCTAAACAAACATGCCGGTCTCCTATTTTACTTACGGATATGAGATCTCTGTTGTCAAGCGAGAAGATAGAGGAACTGTTTCGAGCTTCATTGGGAGCTTTTGTTGCTTCTAGCGACGGTGCCTATAGGTTTTGCCCATCTCCTGACTGCCCCTCAGTTTACCGAGTGGCCAGCCCCGATACGTCTGGTGAACCATTCATGTGTGGAGCATGCTACTCAGAAACTTGTACAAGGTGCCATTTGGAGTATCATCCATTCCTATCATGCGAACAGTACCAAGTATTCAAGGAAGACCCTGATTCGTCACTGAATGAGTGGCGTAAAGATAAGGAGAATGTCAAGAACTGCCCTGTTTGCGGGTACACGATCGAGAAGATAGATGGGTGCAACCACATTGAATGTAGGTGTGGAAGGCATATTTGTTGGGTTTGTTTGGAATATTTTGATAGCAGTGATGAATGCTATGGCCATTTGAGGCTTTCCTGGGAGGAAGAAGAACGGGGGAAGAAAGAAATGAGTGGAGCAGGGGCACCTGATTTCTTCTACAGAGAGGCTCAACGCCTTGGGTATGTCGCAAGATCCGCCTTCAAGTTGCTTCAGATTCAAAAGCAATTCAAGTTGATTAATTCAGGCTCGTCCGTTTTGGACCTTGGTTGTGCTCCCAGTGCCTGGCTTCAGGTAGCTTGCCAGAGGCCCAATGGAGGGCTCTGTTTTGGTTTTTCATTAGGGATGCAAGCAGTTAACTTGGCTATTGGAGAAGCCGCGTTAGGTGTTGGTGATGATGTTATGCATGGAAAGGGCAAGGACAATGCGGATGATTCAACTTCAGTTGCAGATTATTATGATGGTGTGCTGCAAAAAGGAGGTAGAGAGTGA

Coding sequence (CDS)

ATGAGTGGTGGTTCAGCTGAGAGGTCTAATGATGCAGATGCTTGTCCAATTTGCTTATGTGACATTGAAGACGACAGGTTTGAACTTGAAGCTTGTGGACACCATTTTTGCCGACTCTGCCTTGTGGAGCAGTTTGAGTCCGCCATAAAAAACCAGGGAAGCTTCCCAGTATGTTGTGCTAAACAAACATGCCGGTCTCCTATTTTACTTACGGATATGAGATCTCTGTTGTCAAGCGAGAAGATAGAGGAACTGTTTCGAGCTTCATTGGGAGCTTTTGTTGCTTCTAGCGACGGTGCCTATAGGTTTTGCCCATCTCCTGACTGCCCCTCAGTTTACCGAGTGGCCAGCCCCGATACGTCTGGTGAACCATTCATGTGTGGAGCATGCTACTCAGAAACTTGTACAAGGTGCCATTTGGAGTATCATCCATTCCTATCATGCGAACAGTACCAAGTATTCAAGGAAGACCCTGATTCGTCACTGAATGAGTGGCGTAAAGATAAGGAGAATGTCAAGAACTGCCCTGTTTGCGGGTACACGATCGAGAAGATAGATGGGTGCAACCACATTGAATGTAGGTGTGGAAGGCATATTTGTTGGGTTTGTTTGGAATATTTTGATAGCAGTGATGAATGCTATGGCCATTTGAGGCTTTCCTGGGAGGAAGAAGAACGGGGGAAGAAAGAAATGAGTGGAGCAGGGGCACCTGATTTCTTCTACAGAGAGGCTCAACGCCTTGGGTATGTCGCAAGATCCGCCTTCAAGTTGCTTCAGATTCAAAAGCAATTCAAGTTGATTAATTCAGGCTCGTCCGTTTTGGACCTTGGTTGTGCTCCCAGTGCCTGGCTTCAGGTAGCTTGCCAGAGGCCCAATGGAGGGCTCTGTTTTGGTTTTTCATTAGGGATGCAAGCAGTTAACTTGGCTATTGGAGAAGCCGCGTTAGGTGTTGGTGATGATGTTATGCATGGAAAGGGCAAGGACAATGCGGATGATTCAACTTCAGTTGCAGATTATTATGATGGTGTGCTGCAAAAAGGAGGTAGAGAGTGA

Protein sequence

MSGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSGEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLRLSWEEEERGKKEMSGAGAPDFFYREAQRLGYVARSAFKLLQIQKQFKLINSGSSVLDLGCAPSAWLQVACQRPNGGLCFGFSLGMQAVNLAIGEAALGVGDDVMHGKGKDNADDSTSVADYYDGVLQKGGRE

Homology

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BLAST of Lag0018986 vs. NCBI nr
Match: XP_022136524.1 (ATP-dependent RNA helicase DEAH12, chloroplastic-like [Momordica charantia])

HSP 1 Score: 439.5 bits (1129), Expect = 2.7e-119
Identity = 192/216 (88.89%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 3    GGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQ 62
            GGSA+R +DADACPICLCDIEDD+FELE CGHHFCR CLVEQFESAIKNQGSFPVCCA+Q
Sbjct: 1514 GGSAKRPDDADACPICLCDIEDDKFELEGCGHHFCRQCLVEQFESAIKNQGSFPVCCARQ 1573

Query: 63   TCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSG 122
            TCRSPILL DM+SLLS EK+EELFRASLGAFVASS+GAYRFCPSPDCPS+Y+VA P+T G
Sbjct: 1574 TCRSPILLVDMKSLLSDEKLEELFRASLGAFVASSEGAYRFCPSPDCPSIYQVAHPETCG 1633

Query: 123  EPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYTI 182
            EPF+CGACYSETCT+CHLEYHPFLSC+QY+VFKEDPDSSLNEWRKDKENVKNCPVCGYTI
Sbjct: 1634 EPFVCGACYSETCTKCHLEYHPFLSCQQYRVFKEDPDSSLNEWRKDKENVKNCPVCGYTI 1693

Query: 183  EKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLR 219
            EK+DGCNHIEC+CGRHICWVCLEYF SSDECYGHLR
Sbjct: 1694 EKVDGCNHIECKCGRHICWVCLEYFGSSDECYGHLR 1729

[Close]

BLAST of Lag0018986 vs. NCBI nr
Match: XP_023531305.1 (ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.0 bits (1107), Expect = 9.6e-117
Identity = 195/217 (89.86%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 2    SGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAK 61
            SGG AER +DADAC ICLCDIEDDRFELEACGHHFCR CLVEQFESAIKN GSFPVCCAK
Sbjct: 1517 SGGLAERPDDADACSICLCDIEDDRFELEACGHHFCRQCLVEQFESAIKNHGSFPVCCAK 1576

Query: 62   QTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTS 121
            QTC+SPILLTDMR LLS+EK+EELFRASLGAFVA  D AYRFCPSPDCPSVYRVASPDT 
Sbjct: 1577 QTCQSPILLTDMRYLLSNEKLEELFRASLGAFVA-GDSAYRFCPSPDCPSVYRVASPDTC 1636

Query: 122  GEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYT 181
            GEPFMCGAC+SETCTRCHLEYHPFLSCEQY+VFKEDPDSSL+EWRK KENVKNCPVCGYT
Sbjct: 1637 GEPFMCGACFSETCTRCHLEYHPFLSCEQYRVFKEDPDSSLDEWRKGKENVKNCPVCGYT 1696

Query: 182  IEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLR 219
            IEKI+GCNHIEC+CGRHICWVCL+YF SSDECYGHLR
Sbjct: 1697 IEKIEGCNHIECKCGRHICWVCLDYFGSSDECYGHLR 1732

[Close]

BLAST of Lag0018986 vs. NCBI nr
Match: XP_038905605.1 (ATP-dependent RNA helicase DEAH12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 431.0 bits (1107), Expect = 9.6e-117
Identity = 193/218 (88.53%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 1    MSGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCA 60
            MSGGS ER++DADACPICLCDIEDDRFELEACGHHFCR CLVEQFESAIKNQG FPVCCA
Sbjct: 1517 MSGGSVERADDADACPICLCDIEDDRFELEACGHHFCRQCLVEQFESAIKNQGRFPVCCA 1576

Query: 61   KQTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDT 120
            KQ C SPILL DMR+LLSSEK+EELFRASLGAFVASS+GAYRFCPSPDCPSVYRVAS D 
Sbjct: 1577 KQKCGSPILLADMRTLLSSEKLEELFRASLGAFVASSNGAYRFCPSPDCPSVYRVASSDM 1636

Query: 121  SGEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGY 180
            SG  F+CGACYSETC RCHLEYHPFLSCEQY+VFKEDPDSSLNEWRKD+ENVKNCPVCGY
Sbjct: 1637 SGGLFICGACYSETCNRCHLEYHPFLSCEQYRVFKEDPDSSLNEWRKDRENVKNCPVCGY 1696

Query: 181  TIEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLR 219
            TIEK+DGCNH+EC+CGRHICWVCLE+F SSDECY HLR
Sbjct: 1697 TIEKMDGCNHVECKCGRHICWVCLEFFGSSDECYTHLR 1734

[Close]

BLAST of Lag0018986 vs. NCBI nr
Match: XP_022969963.1 (ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 429.9 bits (1104), Expect = 2.1e-116
Identity = 194/217 (89.40%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 2    SGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAK 61
            SGG AER +DADAC ICLCDIEDDRFELEACGHHFCR CLVEQFESAIKN GSFPVCCAK
Sbjct: 1523 SGGLAERPDDADACSICLCDIEDDRFELEACGHHFCRQCLVEQFESAIKNHGSFPVCCAK 1582

Query: 62   QTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTS 121
            QTC+SPILLTDMR LLS+EK+EELFRASLGAFVA  D AYRFCPSPDCPSVYRVASPDT 
Sbjct: 1583 QTCQSPILLTDMRYLLSNEKLEELFRASLGAFVA-GDSAYRFCPSPDCPSVYRVASPDTC 1642

Query: 122  GEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYT 181
            GEPFMCGAC+SETCTRCHLEYHPFLSCEQY+VFKEDPDSSL+EWRK +ENVKNCPVCGYT
Sbjct: 1643 GEPFMCGACFSETCTRCHLEYHPFLSCEQYRVFKEDPDSSLDEWRKGRENVKNCPVCGYT 1702

Query: 182  IEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLR 219
            IEKI+GCNHIEC+CGRHICWVCL+YF SSDECYGHLR
Sbjct: 1703 IEKIEGCNHIECKCGRHICWVCLDYFGSSDECYGHLR 1738

[Close]

BLAST of Lag0018986 vs. NCBI nr
Match: XP_022943236.1 (ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 2.8e-116
Identity = 194/217 (89.40%), Postives = 204/217 (94.01%), Query Frame = 0


Query: 2    SGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAK 61
            SGG AER +DADAC ICLCDIEDDRFELEACGHHFCR CLVEQFESAIKN GSFPVCCAK
Sbjct: 1521 SGGLAERPDDADACSICLCDIEDDRFELEACGHHFCRQCLVEQFESAIKNHGSFPVCCAK 1580

Query: 62   QTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTS 121
            QTC+SPILLTDMR LLS+EK+EELFRASLGAFVA  D AYRFCPSPDCPSVYRVASPDT 
Sbjct: 1581 QTCQSPILLTDMRYLLSNEKLEELFRASLGAFVA-GDSAYRFCPSPDCPSVYRVASPDTC 1640

Query: 122  GEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYT 181
            GEPFMCGAC+SETCTRCHLEYHPFLSCEQY+VFKEDPDSSL+EWRK KENVKNCP CGYT
Sbjct: 1641 GEPFMCGACFSETCTRCHLEYHPFLSCEQYRVFKEDPDSSLDEWRKGKENVKNCPACGYT 1700

Query: 182  IEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLR 219
            IEKI+GCNHIEC+CGRHICWVCL+YF SSDECYGHLR
Sbjct: 1701 IEKIEGCNHIECKCGRHICWVCLDYFGSSDECYGHLR 1736

[Close]

BLAST of Lag0018986 vs. ExPASy Swiss-Prot
Match: F4KGU4 (ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.2e-79
Identity = 126/204 (61.76%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 15   CPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQTCRSPILLTDMR 74
            CPICL ++ DD + LE C H FC+ CL+EQFE++++N  +FP+ C+   C +PI+L DMR
Sbjct: 1564 CPICLSEV-DDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVLADMR 1623

Query: 75   SLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSGEPFMCGACYSET 134
            +LLS EK++ELF ASL +FV SSDG +RFC +PDCPSVYRVA P  SGEPF+CGAC+SE 
Sbjct: 1624 ALLSQEKLDELFSASLSSFVTSSDGKFRFCSTPDCPSVYRVAGPQESGEPFICGACHSEI 1683

Query: 135  CTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHIECR 194
            CTRCHLEYHP ++CE+Y+ FKE+PD SL +W K K NVK CP+C  TIEK DGCNH++CR
Sbjct: 1684 CTRCHLEYHPLITCERYKKFKENPDLSLKDWAKGK-NVKECPICKSTIEKTDGCNHMKCR 1743

Query: 195  CGRHICWVCLEYFDSSDECYGHLR 219
            CG+HICW CL+ F   + CY HLR
Sbjct: 1744 CGKHICWTCLDVFTQEEPCYAHLR 1765

[Close]

BLAST of Lag0018986 vs. ExPASy Swiss-Prot
Match: P0CE10 (ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-78
Identity = 124/204 (60.78%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 15   CPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQTCRSPILLTDMR 74
            CPICL ++ DD + LE C H FC+ CL+EQFE++++N  +FP+ C+   C +PI++ DMR
Sbjct: 1561 CPICLSEV-DDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVVADMR 1620

Query: 75   SLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSGEPFMCGACYSET 134
            +LLS EK++EL  ASL AFV SSDG  RFC +PDCPS+YRVA P  SGEPF+CGAC+SET
Sbjct: 1621 ALLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPSIYRVAGPQESGEPFICGACHSET 1680

Query: 135  CTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHIECR 194
            CTRCHLEYHP ++CE+Y+ FKE+PD SL +W K K+ VK CP+C  TIEK DGCNH++CR
Sbjct: 1681 CTRCHLEYHPLITCERYKKFKENPDLSLKDWAKGKD-VKECPICKSTIEKTDGCNHLQCR 1740

Query: 195  CGRHICWVCLEYFDSSDECYGHLR 219
            CG+HICW CL+ F  ++ CY HLR
Sbjct: 1741 CGKHICWTCLDVFTQAEPCYAHLR 1762

[Close]

BLAST of Lag0018986 vs. ExPASy Swiss-Prot
Match: Q9LVW9 (Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana OX=3702 GN=ARI4 PE=5 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-19
Identity = 61/194 (31.44%), Postives = 91/194 (46.91%), Query Frame = 0


Query: 15  CPICL-CDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQTCRSPILLTDM 74
           C IC+  D+         CGH FC  C  E F   I       + C    C +  +  + 
Sbjct: 119 CDICMEEDLSKYAMTRMECGHRFCNDCWKEHFTVRINEGEGKRIRCMAYKCNT--ICDEA 178

Query: 75  RSLLSSEKIEELFRASLGAFVASSDGAYRFCPS-PDCPSVYRVASPDTSGEPFMCGACYS 134
           R L+S+E  E+  R  + ++V   +   ++CPS P C +  R    D   +   C +C  
Sbjct: 179 RQLVSTELAEKFDRFLIESYV-EDNNMVKWCPSTPHCGNAIRNIKDDGDVDEVEC-SCGL 238

Query: 135 ETCTRCHLEYHPFLSCEQYQVFK---EDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCN 194
           + C  C  E H   SC  ++++K   ED   ++N W     N K CP C   I+K DGCN
Sbjct: 239 QFCFSCLSESHSPCSCLMWKLWKKKCEDESETVN-WM--TVNTKLCPKCSKPIQKRDGCN 298

Query: 195 HIECRCGRHICWVC 204
           H+ C+CG+H CW+C
Sbjct: 299 HMTCKCGQHFCWLC 305

[Close]

BLAST of Lag0018986 vs. ExPASy Swiss-Prot
Match: A2VEA3 (E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus OX=9913 GN=ARIH1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.5e-19
Identity = 59/196 (30.10%), Postives = 87/196 (44.39%), Query Frame = 0


Query: 15  CPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQG-SFPVCCAKQTCRSPILLTDM 74
           C IC  +  +  F    CGH FC  C  E   + I  +G    + C    C   +    +
Sbjct: 184 CQICYLNYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTV 243

Query: 75  RSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSGEPFMCGACYSE 134
             L++  K++  ++  +       +   ++CP+PDC  V +V  PD   +P  C  C  +
Sbjct: 244 MRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPD--AKPVRC-KCGRQ 303

Query: 135 TCTRCHLEYHPFLSCEQYQ--VFKEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHI 194
            C  C   +H  + C+  +  + K D DS  + W     N K CP C  TIEK  GCNH+
Sbjct: 304 FCFNCGENWHDPVKCKWLKKWIKKCDDDSETSNW--IAANTKECPKCHVTIEKDGGCNHM 363

Query: 195 ECR---CGRHICWVCL 205
            CR   C    CWVCL
Sbjct: 364 VCRNQNCKAEFCWVCL 374

[Close]

BLAST of Lag0018986 vs. ExPASy Swiss-Prot
Match: Q9Y4X5 (E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens OX=9606 GN=ARIH1 PE=1 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 2.5e-19
Identity = 59/196 (30.10%), Postives = 87/196 (44.39%), Query Frame = 0


Query: 15  CPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQG-SFPVCCAKQTCRSPILLTDM 74
           C IC  +  +  F    CGH FC  C  E   + I  +G    + C    C   +    +
Sbjct: 186 CQICYLNYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTV 245

Query: 75  RSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSGEPFMCGACYSE 134
             L++  K++  ++  +       +   ++CP+PDC  V +V  PD   +P  C  C  +
Sbjct: 246 MRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPD--AKPVRC-KCGRQ 305

Query: 135 TCTRCHLEYHPFLSCEQYQ--VFKEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHI 194
            C  C   +H  + C+  +  + K D DS  + W     N K CP C  TIEK  GCNH+
Sbjct: 306 FCFNCGENWHDPVKCKWLKKWIKKCDDDSETSNW--IAANTKECPKCHVTIEKDGGCNHM 365

Query: 195 ECR---CGRHICWVCL 205
            CR   C    CWVCL
Sbjct: 366 VCRNQNCKAEFCWVCL 376

[Close]

BLAST of Lag0018986 vs. ExPASy TrEMBL
Match: A0A6J1C4J5 (ATP-dependent RNA helicase DEAH12, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111008205 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.3e-119
Identity = 192/216 (88.89%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 3    GGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQ 62
            GGSA+R +DADACPICLCDIEDD+FELE CGHHFCR CLVEQFESAIKNQGSFPVCCA+Q
Sbjct: 1514 GGSAKRPDDADACPICLCDIEDDKFELEGCGHHFCRQCLVEQFESAIKNQGSFPVCCARQ 1573

Query: 63   TCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSG 122
            TCRSPILL DM+SLLS EK+EELFRASLGAFVASS+GAYRFCPSPDCPS+Y+VA P+T G
Sbjct: 1574 TCRSPILLVDMKSLLSDEKLEELFRASLGAFVASSEGAYRFCPSPDCPSIYQVAHPETCG 1633

Query: 123  EPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYTI 182
            EPF+CGACYSETCT+CHLEYHPFLSC+QY+VFKEDPDSSLNEWRKDKENVKNCPVCGYTI
Sbjct: 1634 EPFVCGACYSETCTKCHLEYHPFLSCQQYRVFKEDPDSSLNEWRKDKENVKNCPVCGYTI 1693

Query: 183  EKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLR 219
            EK+DGCNHIEC+CGRHICWVCLEYF SSDECYGHLR
Sbjct: 1694 EKVDGCNHIECKCGRHICWVCLEYFGSSDECYGHLR 1729

[Close]

BLAST of Lag0018986 vs. ExPASy TrEMBL
Match: A0A6J1I2G6 (ATP-dependent RNA helicase DEAH12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468977 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 1.0e-116
Identity = 194/217 (89.40%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 2    SGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAK 61
            SGG AER +DADAC ICLCDIEDDRFELEACGHHFCR CLVEQFESAIKN GSFPVCCAK
Sbjct: 1523 SGGLAERPDDADACSICLCDIEDDRFELEACGHHFCRQCLVEQFESAIKNHGSFPVCCAK 1582

Query: 62   QTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTS 121
            QTC+SPILLTDMR LLS+EK+EELFRASLGAFVA  D AYRFCPSPDCPSVYRVASPDT 
Sbjct: 1583 QTCQSPILLTDMRYLLSNEKLEELFRASLGAFVA-GDSAYRFCPSPDCPSVYRVASPDTC 1642

Query: 122  GEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYT 181
            GEPFMCGAC+SETCTRCHLEYHPFLSCEQY+VFKEDPDSSL+EWRK +ENVKNCPVCGYT
Sbjct: 1643 GEPFMCGACFSETCTRCHLEYHPFLSCEQYRVFKEDPDSSLDEWRKGRENVKNCPVCGYT 1702

Query: 182  IEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLR 219
            IEKI+GCNHIEC+CGRHICWVCL+YF SSDECYGHLR
Sbjct: 1703 IEKIEGCNHIECKCGRHICWVCLDYFGSSDECYGHLR 1738

[Close]

BLAST of Lag0018986 vs. ExPASy TrEMBL
Match: A0A6J1FR66 (ATP-dependent RNA helicase DEAH12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111448026 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.4e-116
Identity = 194/217 (89.40%), Postives = 204/217 (94.01%), Query Frame = 0


Query: 2    SGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAK 61
            SGG AER +DADAC ICLCDIEDDRFELEACGHHFCR CLVEQFESAIKN GSFPVCCAK
Sbjct: 1521 SGGLAERPDDADACSICLCDIEDDRFELEACGHHFCRQCLVEQFESAIKNHGSFPVCCAK 1580

Query: 62   QTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTS 121
            QTC+SPILLTDMR LLS+EK+EELFRASLGAFVA  D AYRFCPSPDCPSVYRVASPDT 
Sbjct: 1581 QTCQSPILLTDMRYLLSNEKLEELFRASLGAFVA-GDSAYRFCPSPDCPSVYRVASPDTC 1640

Query: 122  GEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYT 181
            GEPFMCGAC+SETCTRCHLEYHPFLSCEQY+VFKEDPDSSL+EWRK KENVKNCP CGYT
Sbjct: 1641 GEPFMCGACFSETCTRCHLEYHPFLSCEQYRVFKEDPDSSLDEWRKGKENVKNCPACGYT 1700

Query: 182  IEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHLR 219
            IEKI+GCNHIEC+CGRHICWVCL+YF SSDECYGHLR
Sbjct: 1701 IEKIEGCNHIECKCGRHICWVCLDYFGSSDECYGHLR 1736

[Close]

BLAST of Lag0018986 vs. ExPASy TrEMBL
Match: A0A0A0KVR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097700 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 2.6e-115
Identity = 187/217 (86.18%), Postives = 199/217 (91.71%), Query Frame = 0


Query: 1    MSGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCA 60
            +SGGS ER +DAD CPICLCDIEDDRFELE CGHHFCR CLVEQFESAIKNQG FP+CCA
Sbjct: 1511 ISGGSGERPDDADCCPICLCDIEDDRFELEVCGHHFCRQCLVEQFESAIKNQGRFPICCA 1570

Query: 61   KQTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDT 120
            KQ C +PI+L DMR+LLSSEK+EELFRASLGAF+ASSDGAYRFCPSPDCPSVYRVA PD 
Sbjct: 1571 KQKCGTPIVLADMRTLLSSEKLEELFRASLGAFIASSDGAYRFCPSPDCPSVYRVARPDM 1630

Query: 121  SGEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGY 180
             GEPF+CGACYSETC RCHLEYHPFLSCEQY+VFKEDPDSSL EWRK KENVKNCPVCGY
Sbjct: 1631 PGEPFVCGACYSETCNRCHLEYHPFLSCEQYRVFKEDPDSSLKEWRKGKENVKNCPVCGY 1690

Query: 181  TIEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHL 218
            TIEK +GCNH+ECRCGRHICWVCLEYF SSDECY HL
Sbjct: 1691 TIEKTEGCNHVECRCGRHICWVCLEYFGSSDECYAHL 1727

[Close]

BLAST of Lag0018986 vs. ExPASy TrEMBL
Match: A0A5D3BD53 (ATP-dependent RNA helicase DEAH12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00060 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 2.8e-114
Identity = 188/217 (86.64%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 1    MSGGSAERSNDADACPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCA 60
            MSGGS ER +DAD CPICLCDIEDDRFELEACG HFCR CLVEQFESAIKNQG FPVCCA
Sbjct: 1510 MSGGSGERPDDADCCPICLCDIEDDRFELEACGDHFCRQCLVEQFESAIKNQGRFPVCCA 1569

Query: 61   KQTCRSPILLTDMRSLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDT 120
            KQ C +PI+L DMR+LLSSEK+EELFRASLGAF+ASSDGAYRFCPSPDCPSVYRVA P+ 
Sbjct: 1570 KQKCGTPIVLADMRTLLSSEKLEELFRASLGAFIASSDGAYRFCPSPDCPSVYRVARPNM 1629

Query: 121  SGEPFMCGACYSETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGY 180
             GEPFMC ACYSETC RCHLEYHPFLSCEQY+VFKEDPDSSL EWRK KENVKNCPVCGY
Sbjct: 1630 PGEPFMCEACYSETCNRCHLEYHPFLSCEQYRVFKEDPDSSLKEWRKGKENVKNCPVCGY 1689

Query: 181  TIEKIDGCNHIECRCGRHICWVCLEYFDSSDECYGHL 218
            TIEK +GCNH+ECRCGRHICWVCLEYF SSDECY HL
Sbjct: 1690 TIEKTEGCNHVECRCGRHICWVCLEYFGSSDECYAHL 1726

[Close]

BLAST of Lag0018986 vs. TAIR 10
Match: AT5G10370.1 (helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related )

HSP 1 Score: 297.4 bits (760), Expect = 1.6e-80
Identity = 126/204 (61.76%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 15   CPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQTCRSPILLTDMR 74
            CPICL ++ DD + LE C H FC+ CL+EQFE++++N  +FP+ C+   C +PI+L DMR
Sbjct: 1564 CPICLSEV-DDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVLADMR 1623

Query: 75   SLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSGEPFMCGACYSET 134
            +LLS EK++ELF ASL +FV SSDG +RFC +PDCPSVYRVA P  SGEPF+CGAC+SE 
Sbjct: 1624 ALLSQEKLDELFSASLSSFVTSSDGKFRFCSTPDCPSVYRVAGPQESGEPFICGACHSEI 1683

Query: 135  CTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHIECR 194
            CTRCHLEYHP ++CE+Y+ FKE+PD SL +W K K NVK CP+C  TIEK DGCNH++CR
Sbjct: 1684 CTRCHLEYHPLITCERYKKFKENPDLSLKDWAKGK-NVKECPICKSTIEKTDGCNHMKCR 1743

Query: 195  CGRHICWVCLEYFDSSDECYGHLR 219
            CG+HICW CL+ F   + CY HLR
Sbjct: 1744 CGKHICWTCLDVFTQEEPCYAHLR 1765

[Close]

BLAST of Lag0018986 vs. TAIR 10
Match: AT4G01020.1 (helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related )

HSP 1 Score: 295.0 bits (754), Expect = 7.7e-80
Identity = 124/204 (60.78%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 15   CPICLCDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQTCRSPILLTDMR 74
            CPICL ++ DD + LE C H FC+ CL+EQFE++++N  +FP+ C+   C +PI++ DMR
Sbjct: 1561 CPICLSEV-DDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVVADMR 1620

Query: 75   SLLSSEKIEELFRASLGAFVASSDGAYRFCPSPDCPSVYRVASPDTSGEPFMCGACYSET 134
            +LLS EK++EL  ASL AFV SSDG  RFC +PDCPS+YRVA P  SGEPF+CGAC+SET
Sbjct: 1621 ALLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPSIYRVAGPQESGEPFICGACHSET 1680

Query: 135  CTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHIECR 194
            CTRCHLEYHP ++CE+Y+ FKE+PD SL +W K K+ VK CP+C  TIEK DGCNH++CR
Sbjct: 1681 CTRCHLEYHPLITCERYKKFKENPDLSLKDWAKGKD-VKECPICKSTIEKTDGCNHLQCR 1740

Query: 195  CGRHICWVCLEYFDSSDECYGHLR 219
            CG+HICW CL+ F  ++ CY HLR
Sbjct: 1741 CGKHICWTCLDVFTQAEPCYAHLR 1762

[Close]

BLAST of Lag0018986 vs. TAIR 10
Match: AT5G13830.1 (FtsJ-like methyltransferase family protein )

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-25
Identity = 57/75 (76.00%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 231 MSGAGAPDFFYREAQRLGYVARSAFKLLQIQKQFKLINSGSSVLDLGCAPSAWLQVACQR 290
           MSGAG PDFFYREAQRLGYVARSAFKLLQIQKQ+KLI  GSSVLDLGCAP AWLQVACQ 
Sbjct: 1   MSGAGVPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60

Query: 291 ----PNGGLCFGFSL 302
                +GG+  G  +
Sbjct: 61  LGPLRSGGIVVGMDI 75

[Close]

BLAST of Lag0018986 vs. TAIR 10
Match: AT3G27710.1 (RING/U-box superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-18
Identity = 54/191 (28.27%), Postives = 84/191 (43.98%), Query Frame = 0


Query: 15  CPICL-CDIEDDRFELEACGHHFCRLCLVEQFESAIKNQGSFPVCCAKQTCRSPILLTDM 74
           C +C+  D+  +      CGH FC  C +  F   I    S  + C    C++      +
Sbjct: 121 CDVCMEDDLPSNVMTRMECGHRFCNDCWIGHFTVKINEGESKRILCMAHECKAICDEDVV 180

Query: 75  RSLLSSEKIEELFRASLGAFVASSDGAYRFCPS-PDCPSVYRVASPDTSGEPFMCGACYS 134
           R L+S E  +   R  + ++V   +   ++CPS P C S  R            C +C  
Sbjct: 181 RKLVSPELADRYDRFLIESYV-EDNNMVKWCPSKPHCGSAIRKIEDGHDVVEVGC-SCGL 240

Query: 135 ETCTRCHLEYHPFLSCEQYQVFKEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHIE 194
           + C  C  E H   SC  ++++K+  +           N K CP C   I+K DGCN + 
Sbjct: 241 QFCFSCLSESHSPCSCLMWKLWKKKCEDESETVNWITVNTKLCPKCSKPIQKRDGCNLMT 300

Query: 195 CRCGRHICWVC 204
           C+CG+H CW+C
Sbjct: 301 CKCGQHFCWLC 309

[Close]

BLAST of Lag0018986 vs. TAIR 10
Match: AT3G14250.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-17
Identity = 50/190 (26.32%), Postives = 88/190 (46.32%), Query Frame = 0


Query: 32  CGHHFCRLCLVEQFESAIKNQGSFPVCCAKQTCRSPILLTDMRSLLSSEKIEELFRASLG 91
           C H +C  C V    + IK   S  + C    C   I     R L+  +  +   +    
Sbjct: 114 CTHAYCTDCTVRYVATKIKENAS-RIKCPDVECTRLIEPYTCRDLIPKDVFDRWEKILCE 173

Query: 92  AFVASSDGAYRFCPSPDCPS-VYRVASPDTSGEPFMCGACYSETCTRCHLEYHPFLSCEQ 151
           + ++S D  Y  CP  DC + +    + D +     C +C+   C +C + +H  + C++
Sbjct: 174 SLISSWDKFY--CPFKDCSAMMVNNENGDANVTQTECRSCHRLFCVQCKVTWHAGIGCDE 233

Query: 152 YQVF-------KEDPDSSLNEWRKDKENVKNCPVCGYTIEKIDGCNHIECRCGRHICWVC 211
           +Q F        ++ D+ L +  K+K+  + CP C + ++K++GC HI+CRCG   C+ C
Sbjct: 234 FQRFGNTKKKSSDEDDALLIQMAKNKQ-WRRCPSCKFYVDKVEGCQHIKCRCGYQFCYGC 293

Query: 212 LEYFDSSDEC 214
              + SS  C
Sbjct: 294 GSVWSSSHAC 299

The following BLAST results are available for this feature:

BLAST of Lag0018986 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136524.1	2.7e-119	88.89	ATP-dependent RNA helicase DEAH12, chloroplastic-like [Momordica charantia]	[more]
XP_023531305.1	9.6e-117	89.86	ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
XP_038905605.1	9.6e-117	88.53	ATP-dependent RNA helicase DEAH12, chloroplastic-like [Benincasa hispida]	[more]
XP_022969963.1	2.1e-116	89.40	ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita maxima]	[more]
XP_022943236.1	2.8e-116	89.40	ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Lag0018986 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KGU4	2.2e-79	61.76	ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P0CE10	1.1e-78	60.78	ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9LVW9	1.9e-19	31.44	Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana OX=3702 GN=ARI...	[more]
A2VEA3	2.5e-19	30.10	E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus OX=9913 GN=ARIH1 PE=2 SV=1	[more]
Q9Y4X5	2.5e-19	30.10	E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens OX=9606 GN=ARIH1 PE=1 SV=2	[more]

BLAST of Lag0018986 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4J5	1.3e-119	88.89	ATP-dependent RNA helicase DEAH12, chloroplastic-like OS=Momordica charantia OX=...	[more]
A0A6J1I2G6	1.0e-116	89.40	ATP-dependent RNA helicase DEAH12, chloroplastic-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1FR66	1.4e-116	89.40	ATP-dependent RNA helicase DEAH12, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]
A0A0A0KVR7	2.6e-115	86.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097700 PE=4 SV=1	[more]
A0A5D3BD53	2.8e-114	86.64	ATP-dependent RNA helicase DEAH12 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lag0018986 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10370.1	1.6e-80	61.76	helicase domain-containing protein / IBR domain-containing protein / zinc finger...	[more]
AT4G01020.1	7.7e-80	60.78	helicase domain-containing protein / IBR domain-containing protein / zinc finger...	[more]
AT5G13830.1	2.4e-25	76.00	FtsJ-like methyltransferase family protein	[more]
AT3G27710.1	4.9e-18	28.27	RING/U-box superfamily protein	[more]
AT3G14250.1	2.4e-17	26.32	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002867	IBR domain	SMART	SM00647	ibrneu5	coord: 149..213 e-value: 0.18 score: 10.2 coord: 84..148 e-value: 8.4E-7 score: 38.6
IPR002867	IBR domain	PFAM	PF01485	IBR	coord: 161..207 e-value: 6.1E-6 score: 26.4 coord: 92..148 e-value: 9.4E-8 score: 32.2
IPR002877	Ribosomal RNA methyltransferase FtsJ domain	PFAM	PF01728	FtsJ	coord: 249..304 e-value: 1.0E-14 score: 55.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 9..92 e-value: 2.2E-11 score: 45.5
None	No IPR available	GENE3D	1.20.120.1750		coord: 144..265 e-value: 2.6E-16 score: 62.3
None	No IPR available	PANTHER	PTHR11685:SF340	RBR-TYPE E3 UBIQUITIN TRANSFERASE	coord: 6..219
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 167..218
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 98..152
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 11..89
IPR031127	E3 ubiquitin ligase RBR family	PANTHER	PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	coord: 6..219
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 32..41
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 15..58 score: 9.715714
IPR044066	TRIAD supradomain	PROSITE	PS51873	TRIAD	coord: 11..220 score: 26.710066
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 236..309

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018986.1	Lag0018986.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity