Lag0018962 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018962
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 37049803 .. 37050672 (+)
RNA-Seq ExpressionLag0018962
SyntenyLag0018962
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTGTTGGCCTCACTTCCACACAACAAATTGGCAGTCATTGTTTCTTCTGCATTCTACTCTTTATGGAATCTTGTCTCTGGCTTTCTTGTCCCGAGACCAGTAAGTCATATTTTTTTAAACTCGTTTTAAGTTTGATAAATGGAAAATAAGTTCTATACTATTGTTATCATGGCAGTGCCGTTCAAACTTGGGAGGGCAGACTAAAGAGAAGTTTAAAATCTTAATTTTATAAGTATATAATTTTAAATTGGTTAAATTACAAATCAAGTCCTTATGGTTTGGAGAAAGTTAGAATTTAGTCCCTTTGGTTTTAAAAGTTAGAATTTCATCCCTATGGTTAGATATCCTCATAAATAGTTCTAATGGATTGAGTACGTGTCGGTTAGCTATTCATGTGTTAATGAGGTAACCTTTTGTATTGAGCTGATTGTGTGAGTTAAATTGCTGACCCGATAAAAAACGAGTTGGAAATTGACCATCTAATGCGACTTTGGAAATTGGCAACTCATTTCTTATTGTTGAGTTAACTACTTAACCACACAATCAACTAAATACAAAAAACCACAACCTCATTGACACATGGAAAGCCATCATTGATACATGGAAAGCTATTTGACTTGTGCTCAATTTATTTTTTCAAATCTTATGGACTAAATTGTAACTTTCTCAAAGTATAGGGACCAAATTTGTAATTTATCCTTGTAAATTTGAAACCAACTAAGAGACGTAATTGTTGGTTCACCTCGGATTTTAACTATTTTTTTCTCTGTAAATCAGGGTATTCTAGGTTGGTGGATTTGGTTTCACTATCTTTGCCCTGTTTCATGGACGTTGAGAGGTATTATCAGTTCACAGCTGGGTGA

mRNA sequence

ATGATGGTTGTTGGCCTCACTTCCACACAACAAATTGGCAGTCATTGTTTCTTCTGCATTCTACTCTTTATGGAATCTTGTCTCTGGCTTTCTTGTCCCGAGACCAGGTATTCTAGGTTGGTGGATTTGGTTTCACTATCTTTGCCCTGTTTCATGGACGTTGAGAGGTATTATCAGTTCACAGCTGGGTGA

Coding sequence (CDS)

ATGATGGTTGTTGGCCTCACTTCCACACAACAAATTGGCAGTCATTGTTTCTTCTGCATTCTACTCTTTATGGAATCTTGTCTCTGGCTTTCTTGTCCCGAGACCAGGTATTCTAGGTTGGTGGATTTGGTTTCACTATCTTTGCCCTGTTTCATGGACGTTGAGAGGTATTATCAGTTCACAGCTGGGTGA

Protein sequence

MMVVGLTSTQQIGSHCFFCILLFMESCLWLSCPETRYSRLVDLVSLSLPCFMDVERYYQFTAG
Homology
[Close]
BLAST of Lag0018962 vs. NCBI nr
Match: KJB08957.1 (hypothetical protein B456_001G115700 [Gossypium raimondii])

HSP 1 Score: 60.1 bits (144), Expect = 8.1e-06
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 3    VVGLTSTQQIGSHCFFCILLFMESCLWLSCPETRYSRLVDLVSLSLPCFMDVERYYQFTA 62
            ++    T   G    FC+LLFMES LW SCP+ + SR+VDLV L L C M+++ Y Q +A
Sbjct: 1282 MINFERTATYGISPLFCLLLFMESPLWFSCPKAKNSRMVDLVLLHLSCCMELKGYCQLSA 1341

The following BLAST results are available for this feature:
BLAST of Lag0018962 vs. NCBI nr
Match NameE-valueIdentityDescription
KJB08957.18.1e-0646.67hypothetical protein B456_001G115700 [Gossypium raimondii][more]
BLAST of Lag0018962 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018962.1Lag0018962.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane