Lag0018961 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018961
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ABC transporter G family member 31-like
Location	chr5: 37049077 .. 37049513 (+)
RNA-Seq Expression	Lag0018961
Synteny	Lag0018961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCTAAACGGACCATAATTCTTGTTTTCTTGGGAATTAATGGAGTAGCTCCAATACCAAATCCCTACAATCCAGCTACTTGGATGCTAGAGGTCACAACACCTGCTGCTGAGAAGAGAATTGGACAAGATTTTGCATACATATACAGCAACTCAGAGCAATACAGGTGCTGCTAATAACAATTGTACCAATGATATTTTGGCCAATGAACTTTCCTTCTCTTTTTTCTTTTACTGTTTTTAAATATTTTAGTCATGTTTGCAATTTTTTCTCTAGGAGTGTTGAAGCTTCCATCAAGCATCATAGTGTTCCACCTGATGGTGCAGAAGCATTGAAGTTTGATTCTACTCTCAAGATAAATTGTCCCAGTTTTTTACTTGCCTCTGGAAGCAAACACTTGTCTATTGGAGAAGTCCCCATTACAATGCCATGA

mRNA sequence

ATGTATTCTAAACGGACCATAATTCTTGTTTTCTTGGGAATTAATGGAGTAGCTCCAATACCAAATCCCTACAATCCAGCTACTTGGATGCTAGAGGTCACAACACCTGCTGCTGAGAAGAGAATTGGACAAGATTTTGCATACATATACAGCAACTCAGAGCAATACAGGAGTGTTGAAGCTTCCATCAAGCATCATAGTGTTCCACCTGATGGTGCAGAAGCATTGAAGTTTGATTCTACTCTCAAGATAAATTGTCCCAGTTTTTTACTTGCCTCTGGAAGCAAACACTTGTCTATTGGAGAAGTCCCCATTACAATGCCATGA

Coding sequence (CDS)

ATGTATTCTAAACGGACCATAATTCTTGTTTTCTTGGGAATTAATGGAGTAGCTCCAATACCAAATCCCTACAATCCAGCTACTTGGATGCTAGAGGTCACAACACCTGCTGCTGAGAAGAGAATTGGACAAGATTTTGCATACATATACAGCAACTCAGAGCAATACAGGAGTGTTGAAGCTTCCATCAAGCATCATAGTGTTCCACCTGATGGTGCAGAAGCATTGAAGTTTGATTCTACTCTCAAGATAAATTGTCCCAGTTTTTTACTTGCCTCTGGAAGCAAACACTTGTCTATTGGAGAAGTCCCCATTACAATGCCATGA

Protein sequence

MYSKRTIILVFLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHHSVPPDGAEALKFDSTLKINCPSFLLASGSKHLSIGEVPITMP

Homology

[Close]

BLAST of Lag0018961 vs. NCBI nr
Match: XP_038900514.1 (ABC transporter G family member 31 isoform X1 [Benincasa hispida])

HSP 1 Score: 117.9 bits (294), Expect = 5.6e-23
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 11   FLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHHSVPP 70
            F GINGV+PIPN YNPATWMLEVTTPAAE+RIG+DFA IY NS+Q+R+VE SIK  SVPP
Sbjct: 1078 FEGINGVSPIPNDYNPATWMLEVTTPAAEQRIGRDFADIYRNSDQFRNVEESIKQFSVPP 1137

Query: 71   DGAEALKFDST 82
             G EALKFDST
Sbjct: 1138 SGGEALKFDST 1148

[Close]

BLAST of Lag0018961 vs. NCBI nr
Match: XP_038900515.1 (ABC transporter G family member 31 isoform X2 [Benincasa hispida])

HSP 1 Score: 117.9 bits (294), Expect = 5.6e-23
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 11  FLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHHSVPP 70
           F GINGV+PIPN YNPATWMLEVTTPAAE+RIG+DFA IY NS+Q+R+VE SIK  SVPP
Sbjct: 920 FEGINGVSPIPNDYNPATWMLEVTTPAAEQRIGRDFADIYRNSDQFRNVEESIKQFSVPP 979

Query: 71  DGAEALKFDST 82
            G EALKFDST
Sbjct: 980 SGGEALKFDST 990

[Close]

BLAST of Lag0018961 vs. NCBI nr
Match: XP_022136671.1 (ABC transporter G family member 31-like [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 7   IILVFLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHH 66
           +I  F GI GVAPI N YNPATWMLEVTTPAAE+RIG+DFA +Y NSEQYR+VEA IKH+
Sbjct: 889 MINYFEGITGVAPILNSYNPATWMLEVTTPAAEQRIGKDFADLYRNSEQYRNVEAFIKHN 948

Query: 67  SVPPDGAEALKFDSTLKIN 86
           S+PPDG E LKF ST   N
Sbjct: 949 SIPPDGGEPLKFASTYSQN 967

[Close]

BLAST of Lag0018961 vs. NCBI nr
Match: XP_011657127.1 (ABC transporter G family member 31 [Cucumis sativus] >KGN47083.1 hypothetical protein Csa_020868 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-22
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 11   FLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHHSVPP 70
            F GINGV+PIP+ YNPATWMLEVTTPAAE+RIG+DFA IY NS Q+R VE SIK +SVPP
Sbjct: 1077 FEGINGVSPIPDAYNPATWMLEVTTPAAEQRIGRDFADIYRNSGQFRDVEESIKQYSVPP 1136

Query: 71   DGAEALKFDST 82
             G EALKFDST
Sbjct: 1137 SGGEALKFDST 1147

[Close]

BLAST of Lag0018961 vs. NCBI nr
Match: XP_023882211.1 (ABC transporter G family member 31-like isoform X2 [Quercus suber])

HSP 1 Score: 114.4 bits (285), Expect = 6.2e-22
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 11   FLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHHSVPP 70
            F GING+ PIPN YNPATWMLEVTTPAAE RIG+DFA IY NS+QY  VEASIKH S+PP
Sbjct: 1074 FQGINGIPPIPNGYNPATWMLEVTTPAAEDRIGEDFANIYQNSKQYSDVEASIKHFSIPP 1133

Query: 71   DGAEALKFDST 82
             G+E LKF +T
Sbjct: 1134 AGSEPLKFSTT 1144

[Close]

BLAST of Lag0018961 vs. ExPASy Swiss-Prot
Match: Q7PC88 (ABC transporter G family member 31 OS=Arabidopsis thaliana OX=3702 GN=ABCG31 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 5    RTIILVFLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIK 64
            + ++  F GINGV PI + YNPATWMLEVTTPA E++   +FA +Y  S+Q+R VEA+IK
Sbjct: 1068 QVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIK 1127

Query: 65   HHSVPPDGAEALKFDSTLKIN-CPSFLLASGSKHL 99
              SVPP+G+E + F S    N    FLL    ++L
Sbjct: 1128 QLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNL 1162

[Close]

BLAST of Lag0018961 vs. ExPASy Swiss-Prot
Match: Q8S628 (ABC transporter G family member 51 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG51 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-15
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 7    IILVFLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHH 66
            +I  F GI  V PI   YNPATWMLEVTT A+E+R+G DFA +Y NS Q+R+VE  I   
Sbjct: 1082 MINYFQGIPRVVPITEGYNPATWMLEVTTQASEERLGIDFATVYKNSYQFRNVENLIVEL 1141

Query: 67   SVPPDGAEALKFDSTLKIN 86
            S+P  G E LKF S    N
Sbjct: 1142 SIPASGTEPLKFSSEFSQN 1160

[Close]

BLAST of Lag0018961 vs. ExPASy Swiss-Prot
Match: Q8GU84 (ABC transporter G family member 48 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG48 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 7    IILVFLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHH 66
            ++  F  + GV  I   YNPATWMLEVT+P AE R+  +FA IY+NSE YR  +  IK  
Sbjct: 1113 LVEYFEAVPGVPKITEGYNPATWMLEVTSPIAEARLNVNFAEIYANSELYRKNQELIKEL 1172

Query: 67   SVPPDGAEALKFDSTLKINCPSFLLAS 94
            S PP G + L F +    N  S  +A+
Sbjct: 1173 STPPPGYQDLSFPTKYSQNFYSQCIAN 1199

[Close]

BLAST of Lag0018961 vs. ExPASy Swiss-Prot
Match: B9G300 (ABC transporter G family member 52 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG52 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 7    IILVFLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEASIKHH 66
            +I  F  I GV+ I + YNP+TWMLEVT+   E+R   DF+ IY NSE YR  +  IK  
Sbjct: 1035 LIKYFEAIQGVSKIKDGYNPSTWMLEVTSTTQEQRTCVDFSQIYKNSELYRRNKNLIKEL 1094

Query: 67   SVPPDGAEALKFDSTL-KINCPSFLLASGSKHLSIGEVP 105
            S PP+G+  L F +   ++    +L     +HLS    P
Sbjct: 1095 SAPPEGSSDLSFPTQYSQLFLTQWLACLWKQHLSYWRNP 1133

[Close]

BLAST of Lag0018961 vs. ExPASy Swiss-Prot
Match: Q7PC84 (ABC transporter G family member 39 OS=Arabidopsis thaliana OX=3702 GN=ABCG39 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 2    YSKRTIILVFLGINGVAPIPNPYNPATWMLEVTTPAAEKRIGQDFAYIYSNSEQYRSVEA 61
            +  + ++  F  + GV  I + YNPATWML+VTTP+ E ++  DFA I+SNS  YR  + 
Sbjct: 1092 HHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQE 1151

Query: 62   SIKHHSVPPDGAEALKF 79
             IK  S PP G++ + F
Sbjct: 1152 LIKDLSTPPPGSKDVYF 1168

The following BLAST results are available for this feature:

BLAST of Lag0018961 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900514.1	5.6e-23	78.87	ABC transporter G family member 31 isoform X1 [Benincasa hispida]	[more]
XP_038900515.1	5.6e-23	78.87	ABC transporter G family member 31 isoform X2 [Benincasa hispida]	[more]
XP_022136671.1	1.6e-22	72.15	ABC transporter G family member 31-like [Momordica charantia]	[more]
XP_011657127.1	3.6e-22	77.46	ABC transporter G family member 31 [Cucumis sativus] >KGN47083.1 hypothetical pr...	[more]
XP_023882211.1	6.2e-22	74.65	ABC transporter G family member 31-like isoform X2 [Quercus suber]	[more]

BLAST of Lag0018961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7PC88	1.1e-18	49.47	ABC transporter G family member 31 OS=Arabidopsis thaliana OX=3702 GN=ABCG31 PE=...	[more]
Q8S628	1.5e-15	54.43	ABC transporter G family member 51 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]
Q8GU84	1.6e-12	44.83	ABC transporter G family member 48 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]
B9G300	1.3e-11	40.40	ABC transporter G family member 52 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]
Q7PC84	1.7e-11	42.86	ABC transporter G family member 39 OS=Arabidopsis thaliana OX=3702 GN=ABCG39 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19241	ATP-BINDING CASSETTE TRANSPORTER	coord: 5..86
None	No IPR available	PANTHER	PTHR19241:SF627	TYROSINE KINASE FAMILY PROTEIN	coord: 5..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018961.1	Lag0018961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding