Lag0018949 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018949
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial-like
Location	chr5: 36912194 .. 36913938 (-)
RNA-Seq Expression	Lag0018949
Synteny	Lag0018949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACTCCGCTCAGCCAAAACGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCGTAATTTTCTCTCTTTCTCTCTATCTCTTTTTCTATTTCTGATTGTGATCGTCGATGCGCTGCAATTGATTCACGTCTCTCTAAATCTTCTTTTCTTTATTGACAGAACTTCTTCTTGTTACTTTTGGCAATTTCGTTTGTCCCATTGTATGTTTAATTTCATTCATTTTCCTGCCCTATTTTCATCTGACGAAATGGGGGAAGAAGGGTTAGATTGACGATTGAATCATTTTATGAAGTTTGGACCAAAATAATTTGATTGAACCTTTTTTTGTTCCTTCTATAGATTGGAAAACCTGCAAAGGGAGGTATTGGAATTTGAATTCAGATTTAAATGATGTTATTTAGTAGTTTTGTTTAATCATCGGATGGAGGTGTATAAATGACACACATTTGACAATTAACTGTGGATGAGATTTGCAGTCGGTAAGGAGTAGATTTGATTTTAAGCTGGAGGGAAAAAAGACTAAAGGGACAGATTTTTCTTGATCCATTACTGAGTGGCAAAAGTATACTTGGTGATTTCTGTAATTACATAAAAATGCTCAATGAAGTCTTAGGTGTGGCTTGTGGTAGATTTCACTGTCTTCTGATTTTGCATAATTAAGACTTGAAGGAAAGGGAAAATATAGGCAGTAAGTTTATTAGAGGGTCTAGGGCTATATTCGACAAATTCTCCTCCGGGATAAAGGGAGTGGACGTTTTTTCATCTTTAGTCTTACCCCTGCAGCCTGCTTCTTCTTTCTTTCTCTTTCTCACACGTTTCTGGGTTTGGGGAGAGGGACAGATATTCTTCTGTTTTTGGGGTGGGTTTCTGTAAATTGTTGGAGCTAAGCCAAGGTGTCGAGGGGTGATTGTCAGATGAATATATTCGATGTTGTGAATTTATTTTCTAGTAATCCACCATAACATATACTTGATGGCTGTTTCACTTTGGTAGGGTACAAATATGTATTGTTATTTTTAAATACTATTTCATACTTTGTGTACAAGCAAGTAGCAAGGAAAATTTGTATGCAGGAGTGCAGTGAAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTATTATTTTTTTAATTTTTAAATGACCTTGATATTTGTTCTTCTGCTATGATTGTTCTGCTTCTGAATCAGTTTTATTTCTTATACGAACTTTTTTTCTTGATATTAGATGAAGCGGCAAAGTGGGAGGAGATTACTTATTTAGGCATTGCAACCTGCAGTTCTTTAGCGATCTATAATTTATCAAAGGGCCACCCCCACTATGAAGAGCCTCCTGTGAGCTATAACTTCAGTCGATTTATATTTTCCCTCCACTTCTCAATTTCTTAGTATCACTGTGCATTGTACTCTCATTTAGTTTCACTATGCATTGTACCTCATGTGTGGTTTGCTTATTTTGTTTGGGTTTTCATCGTATGCAGGCATATCCATATTTGCACATACGCAATAAAGAATTCCCATGGGGTAAGCTTCCGCTTCATTACAAGTTTTACGACATCTTTTATCCCTTAGCAAATTTGGTTGTGATGAGGAAACTAGAACTGAATACTTTAATGCTGTCATTGTGCTATTTTCTTCCAATTAAAGATGGTGCTATGTCATTTCCTTGCATTTAG

mRNA sequence

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACTCCGCTCAGCCAAAACGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCATGAAGCGGCAAAGTGGGAGGAGATTACTTATTTAGGCATTGCAACCTGCAGTTCTTTAGCGATCTATAATTTATCAAAGGGCCACCCCCACTATGAAGAGCCTCCTGCATATCCATATTTGCACATACGCAATAAAGAATTCCCATGGGGTAAGCTTCCGCTTCATTACAAGTTTTACGACATCTTTTATCCCTTAGCAAATTTGGTTGTGATGAGGAAACTAGAACTGAATACTTTAATGCTGTCATTGTGCTATTTTCTTCCAATTAAAGATGGTGCTATGTCATTTCCTTGCATTTAG

Coding sequence (CDS)

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACTCCGCTCAGCCAAAACGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCATGAAGCGGCAAAGTGGGAGGAGATTACTTATTTAGGCATTGCAACCTGCAGTTCTTTAGCGATCTATAATTTATCAAAGGGCCACCCCCACTATGAAGAGCCTCCTGCATATCCATATTTGCACATACGCAATAAAGAATTCCCATGGGGTAAGCTTCCGCTTCATTACAAGTTTTACGACATCTTTTATCCCTTAGCAAATTTGGTTGTGATGAGGAAACTAGAACTGAATACTTTAATGCTGTCATTGTGCTATTTTCTTCCAATTAAAGATGGTGCTATGTCATTTCCTTGCATTTAG

Protein sequence

MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDAHEAAKWEEITYLGIATCSSLAIYNLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPLHYKFYDIFYPLANLVVMRKLELNTLMLSLCYFLPIKDGAMSFPCI

Homology

[Close]

BLAST of Lag0018949 vs. NCBI nr
Match: KAG7015416.1 (Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-41
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDAHEAAKWEEITYLGIATCSSLAIY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA E AKWE+ITY GI +CS LA Y
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPLHY 95
          NLSKGHPHYEEPPAYPYLHIRNKEFPWGKLP HY
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY 94

[Close]

BLAST of Lag0018949 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6577328.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 4.6e-38
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDAHEAAKWEEITYLGIATCSSLAIY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA E AKWE+ITY GI +CS LA Y
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHYEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Lag0018949 vs. NCBI nr
Match: XP_022941809.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6600678.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031316.1 Cytochrome c oxidase subunit 6a, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDAHEAAKWEEITYLGIATCSSLAIY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA E AKWE+ITY GIA C++LA Y
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Lag0018949 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-37
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDAHEAAKWEEITYLGIATCSSLAIY 60
          MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDA E AKWE+ITY GI +CS LA Y
Sbjct: 1  MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHYEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Lag0018949 vs. NCBI nr
Match: XP_023001309.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 8.6e-37
Identity = 78/88 (88.64%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDAHEAAKWEEITYLGIATCSSLAIY 60
          MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDA E AKWE+ITY GIA C++LA Y
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of Lag0018949 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-28
Identity = 61/89 (68.54%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDAHEAAKWEEITYLGIATCSSLAI 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA+EAAKWE+ITYLGIA+C++LA+
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

The following BLAST results are available for this feature:

BLAST of Lag0018949 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015416.1	3.4e-41	90.43	Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma ...	[more]
XP_022929363.1	4.6e-38	90.91	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG657...	[more]
XP_022941809.1	1.7e-37	89.77	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG660...	[more]
XP_023551866.1	2.3e-37	89.77	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001309.1	8.6e-37	88.64	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of Lag0018949 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T070	3.4e-28	68.54	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	GENE3D	4.10.95.10	Cytochrome c oxidase, subunit VIa	coord: 29..99 e-value: 2.2E-12 score: 48.7
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	SUPERFAMILY	81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..88
None	No IPR available	PANTHER	PTHR11504:SF0	CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIAL	coord: 1..90
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018949.1	Lag0018949.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0030234	enzyme regulator activity