Lag0018948 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018948
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 36908872 .. 36909225 (+)
RNA-Seq Expression	Lag0018948
Synteny	Lag0018948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTTCTCTTCTTCTCTTCACTCTCTCCACCTTCGACCCTGCCATTAAAATGAACTTCACTCCTCCACGAAGGCTCATTTCCCAGAAATTGACGTCGATTGAAGTCTGTACGCCGTCGGACAGACTCCGCGGCCATGCTTCGCCAGAGCTCGCACTCATTTCTGCCCGCAGAGATTGGTATCGGTGGCTGAGGTGGAGCGTGGCGGCGCTGAGATCGAAAGAGTGCTTTTTTTAAATCGGGTCGCGGCTGGTAGAAAACAGGGCGGTGCCGCAACCATCTTCGAGTTACGGCAGCGACGACGAGAGAGTGAGGGAGGCGGGCGGTGATCAACGCGAAGAGGAGCGATAG

mRNA sequence

ATGTTTGTTTCTCTTCTTCTCTTCACTCTCTCCACCTTCGACCCTGCCATTAAAATGAACTTCACTCCTCCACGAAGGCTCATTTCCCAGAAATTGACGTCGATTGAAGTCTGTACGCCGTCGGACAGACTCCGCGGCCATGCTTCGCCAGAGCTCGCACTCATTTCTGCCCGCAGAGATTGGGCGGTGCCGCAACCATCTTCGAGTTACGGCAGCGACGACGAGAGAGTGAGGGAGGCGGGCGGTGATCAACGCGAAGAGGAGCGATAG

Coding sequence (CDS)

ATGTTTGTTTCTCTTCTTCTCTTCACTCTCTCCACCTTCGACCCTGCCATTAAAATGAACTTCACTCCTCCACGAAGGCTCATTTCCCAGAAATTGACGTCGATTGAAGTCTGTACGCCGTCGGACAGACTCCGCGGCCATGCTTCGCCAGAGCTCGCACTCATTTCTGCCCGCAGAGATTGGGCGGTGCCGCAACCATCTTCGAGTTACGGCAGCGACGACGAGAGAGTGAGGGAGGCGGGCGGTGATCAACGCGAAGAGGAGCGATAG

Protein sequence

MFVSLLLFTLSTFDPAIKMNFTPPRRLISQKLTSIEVCTPSDRLRGHASPELALISARRDWAVPQPSSSYGSDDERVREAGGDQREEER

Homology

[Close]

BLAST of Lag0018948 vs. NCBI nr
Match: XP_038883664.1 (uncharacterized protein LOC120074578 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-08
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1   MFVSLLLFTLSTFDPAIKMNFTPPRRLISQKLTSIEVCTPSD 43
           +FVSLLLFTLSTF+PAIKMN TPPRRL+SQK   IEV TPSD
Sbjct: 76  VFVSLLLFTLSTFEPAIKMNLTPPRRLLSQKSMPIEVRTPSD 117

[Close]

BLAST of Lag0018948 vs. NCBI nr
Match: XP_023517235.1 (uncharacterized protein LOC111781061 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MFVSLLLFTLSTFDPAIKMNFTPPRRLISQKLTSIEVCTPS 42
           +FVSLLLFTLSTF+PAIKMN TPPRRL+S+K T IE+ TPS
Sbjct: 74  VFVSLLLFTLSTFEPAIKMNLTPPRRLLSRKSTPIEIRTPS 114

[Close]

BLAST of Lag0018948 vs. NCBI nr
Match: XP_022924904.1 (uncharacterized protein LOC111432312 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MFVSLLLFTLSTFDPAIKMNFTPPRRLISQKLTSIEVCTPS 42
           +FVSLLLFTLSTF+PAIKMN TPPRRL+S+K T IE+ TPS
Sbjct: 72  VFVSLLLFTLSTFEPAIKMNLTPPRRLLSRKSTPIEIRTPS 112

[Close]

BLAST of Lag0018948 vs. NCBI nr
Match: KAG6595670.1 (hypothetical protein SDJN03_12223, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027629.1 hypothetical protein SDJN02_11644, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MFVSLLLFTLSTFDPAIKMNFTPPRRLISQKLTSIEVCTPS 42
           +FVSLLLFTLSTF+PAIKMN TPPRRL+S+K T IE+ TPS
Sbjct: 72  VFVSLLLFTLSTFEPAIKMNLTPPRRLLSRKSTPIEIRTPS 112

[Close]

BLAST of Lag0018948 vs. NCBI nr
Match: XP_022966290.1 (uncharacterized protein LOC111465995 [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MFVSLLLFTLSTFDPAIKMNFTPPRRLISQKLTSIEVCTPS 42
           +FVSLLLFTLSTF+PAIKMN TPPRRL+S+K T IE+ TPS
Sbjct: 74  VFVSLLLFTLSTFEPAIKMNLTPPRRLLSRKSTPIEIRTPS 114

The following BLAST results are available for this feature:

BLAST of Lag0018948 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883664.1	7.1e-08	80.95	uncharacterized protein LOC120074578 [Benincasa hispida]	[more]
XP_023517235.1	3.5e-07	78.05	uncharacterized protein LOC111781061 [Cucurbita pepo subsp. pepo]	[more]
XP_022924904.1	3.5e-07	78.05	uncharacterized protein LOC111432312 [Cucurbita moschata]	[more]
KAG6595670.1	3.5e-07	78.05	hypothetical protein SDJN03_12223, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022966290.1	3.5e-07	78.05	uncharacterized protein LOC111465995 [Cucurbita maxima]	[more]

BLAST of Lag0018948 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018948.1	Lag0018948.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane