Lag0018943 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018943
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr5: 36829200 .. 36830670 (+)
RNA-Seq ExpressionLag0018943
SyntenyLag0018943
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACCGCCACCAGCGGAGGTCACGAGACGATGATAACATCCGGGGGTCACCGAGACGAACAGGCTGAGGAGCCGAGGCCGAGGAGCATAGGCCGAGGAGCCGAGGCCGAGCAAAGGATGCTGACGCCAAAATTGTCGCCCTTGAGGATGAGGTGAAGGGAATGAACCGGAGTTTATCCAGAATACTCTAGATCCTGGATAAACCCGGCCCTAGCACCAAACTCCATGTGGGGGACTTGATTAGAGACCCGAGGAAGGGGAAGGATCTAGTCGAATACGTGGATGAGTCAGAGACAGACTCCAAAGGAAAGAAGACCAACAACGCAACCAGCAAGGTCAGGGGGCTGAAGCACACAGAACGCACAGCACTGAGGAACCCTGAGTCAAGAACCAGCCGTAGAACAAACCTGAGAAATCTGATCGAGGAAAAGCGTAGGGTGGCCAAAACTGCCGAAGCCAAGGCTAAAGCTGCCGAGGCCGAGGCTAAGAAAGATCATCTCCCTTGGAAGACTGAACTTCTAAATATACTAAAGGAACTTGGAAATCCTCAGGGAGACTTGCAGAAGTTGAAGGATTCGGGAGGGCAAGACATGGATGAACTAATCTACCAAGTCGATCCGCCCTTCACAGAAGAAGCCATGAAAGCCGAGGTGCCCCAAAAGTTTAAGGTACCCACGTTCAAACAGTACGATGGCAAGAAAGACCCCGTGCAACATCTAAACGCATACAGAAGCTCGATGGACTTCCACGGTGTCTCAGATGCAATCAGGTGTCGCGCATTCTTTTCCTTGCACAGATCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTGACAGTCAAACAGCAGCCAGGTGAGAGCTTGCATGATTACATAACGCGTTTTAATGACGAAGCACTACAGGTTGAGGGGTACAGCGAGGGAGCAACCCTGGTAGCCATAACAGCCGGACTGGAAGACGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCAAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAGGAGTTACTGAAATCAAAGAGGTCAGAACGAGAGTACAATAGGTTTTCTTCATCTAACTACGAGAGTAAAAAGGACAAAAGGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACAATGGTCGAGGCCGACCAGACGAAGGAGACTACTTGAAGAAGTTTGAAAAGTACACCCATACTTCAGTCCCACAGGAGCAGATCTTGATGGAGATAAGGGATACAAACCTTCTCAGCACACCCCGGAAGCTGAAGTCAAATCCTGACAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTACATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCGAAATGGATACCTGAAGGAATTCACCGCAAAGGCCGAGGCCGACCAGAGATGA

mRNA sequence

ATGGTGACCGCCACCAGCGGAGGTCACGAGACGATGATAACATCCGGGGGTCACCGAGACGAACAGGCTGAGGAGCCGAGGCCGAGGAGCATAGGCCGAGGAGCCGAGGCCGAGCAAAGGATGCTGACGCCAAAATTGTCGCCCTTGAGGATGAGAGACCCGAGGAAGGGGAAGGATCTAGTCGAATACGTGGATGAGTCAGAGACAGACTCCAAAGGAAAGAAGACCAACAACGCAACCAGCAAGGTCAGGGGGCTGAAGCACACAGAACGCACAGCACTGAGGAACCCTGAGTCAAGAACCAGCCGTAGAACAAACCTGAGAAATCTGATCGAGGAAAAGCGTAGGGTGGCCAAAACTGCCGAAGCCAAGGCTAAAGCTGCCGAGGCCGAGGCTAAGAAAGATCATCTCCCTTGGAAGACTGAACTTCTAAATATACTAAAGGAACTTGGAAATCCTCAGGGAGACTTGCAGAAGTTGAAGGATTCGGGAGGGCAAGACATGGATGAACTAATCTACCAAGTCGATCCGCCCTTCACAGAAGAAGCCATGAAAGCCGAGGTGCCCCAAAAGTTTAAGATCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTGACAGTCAAACAGCAGCCAGGTGAGAGCTTGCATGATTACATAACGCGTTTTAATGACGAAGCACTACAGGTTGAGGGGTACAGCGAGGGAGCAACCCTGGTAGCCATAACAGCCGGACTGGAAGACGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCAAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAGGAGTTACTGAAATCAAAGAGGTCAGAACGAGAGTACAATAGGTTTTCTTCATCTAACTACGAGAGTAAAAAGGACAAAAGGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACAATGGTCGAGGCCGACCAGACGAAGGAGACTACTTGAAGAAGTTTGAAAAGTACACCCATACTTCAGTCCCACAGGAGCAGATCTTGATGGAGATAAGGGATACAAACCTTCTCAGCACACCCCGGAAGCTGAAGTCAAATCCTGACAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTACATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCGAAATGGATACCTGAAGGAATTCACCGCAAAGGCCGAGGCCGACCAGAGATGA

Coding sequence (CDS)

ATGGTGACCGCCACCAGCGGAGGTCACGAGACGATGATAACATCCGGGGGTCACCGAGACGAACAGGCTGAGGAGCCGAGGCCGAGGAGCATAGGCCGAGGAGCCGAGGCCGAGCAAAGGATGCTGACGCCAAAATTGTCGCCCTTGAGGATGAGAGACCCGAGGAAGGGGAAGGATCTAGTCGAATACGTGGATGAGTCAGAGACAGACTCCAAAGGAAAGAAGACCAACAACGCAACCAGCAAGGTCAGGGGGCTGAAGCACACAGAACGCACAGCACTGAGGAACCCTGAGTCAAGAACCAGCCGTAGAACAAACCTGAGAAATCTGATCGAGGAAAAGCGTAGGGTGGCCAAAACTGCCGAAGCCAAGGCTAAAGCTGCCGAGGCCGAGGCTAAGAAAGATCATCTCCCTTGGAAGACTGAACTTCTAAATATACTAAAGGAACTTGGAAATCCTCAGGGAGACTTGCAGAAGTTGAAGGATTCGGGAGGGCAAGACATGGATGAACTAATCTACCAAGTCGATCCGCCCTTCACAGAAGAAGCCATGAAAGCCGAGGTGCCCCAAAAGTTTAAGATCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTGACAGTCAAACAGCAGCCAGGTGAGAGCTTGCATGATTACATAACGCGTTTTAATGACGAAGCACTACAGGTTGAGGGGTACAGCGAGGGAGCAACCCTGGTAGCCATAACAGCCGGACTGGAAGACGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCAAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAGGAGTTACTGAAATCAAAGAGGTCAGAACGAGAGTACAATAGGTTTTCTTCATCTAACTACGAGAGTAAAAAGGACAAAAGGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACAATGGTCGAGGCCGACCAGACGAAGGAGACTACTTGAAGAAGTTTGAAAAGTACACCCATACTTCAGTCCCACAGGAGCAGATCTTGATGGAGATAAGGGATACAAACCTTCTCAGCACACCCCGGAAGCTGAAGTCAAATCCTGACAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTACATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCGAAATGGATACCTGAAGGAATTCACCGCAAAGGCCGAGGCCGACCAGAGATGA

Protein sequence

MVTATSGGHETMITSGGHRDEQAEEPRPRSIGRGAEAEQRMLTPKLSPLRMRDPRKGKDLVEYVDESETDSKGKKTNNATSKVRGLKHTERTALRNPESRTSRRTNLRNLIEEKRRVAKTAEAKAKAAEAEAKKDHLPWKTELLNILKELGNPQGDLQKLKDSGGQDMDELIYQVDPPFTEEAMKAEVPQKFKIMGAREQRKPHINLLTVKQQPGESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKRSEREYNRFSSSNYESKKDKRQRTDEGGRGRPDNGRGRPDEGDYLKKFEKYTHTSVPQEQILMEIRDTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAKAEADQR
Homology
BLAST of Lag0018943 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 184.1 bits (466), Expect = 2.4e-42
Identity = 144/441 (32.65%), Postives = 202/441 (45.80%), Query Frame = 0

Query: 51  MRDPRKGKDLVEYVDESETDSKGKKTNNATSKVRGLKHTERTALRNPESRTSRRTNLRNL 110
           +RDP+KGK   E   E  T+S G K                        R    T  R  
Sbjct: 75  VRDPKKGKGPTESDTEESTNSVGSKL-----------------------RIGGNTRQRTR 134

Query: 111 IEEKRRVAKTAEAKAKAAEAEAKKDHLPWKTELLNILKELGNP-----QGDLQKLKDSGG 170
           I + R   KT +     A    K DH    +E +++ K  G P       + +      G
Sbjct: 135 IFDPR---KTKKQHKSPAPNGGKSDHDDRNSEPISLDK--GKPADRPESSEKRHSHKEKG 194

Query: 171 QDMDELIYQVDPPFTEEAMKAEVPQKFKI------------------------------- 230
            D++EL+ Q D PFTEE M+ +VP KFK+                               
Sbjct: 195 FDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEA 254

Query: 231 ----------------------------------------MGAREQRKPHINLLTVKQQP 290
                                                   +G R + +P   LLT+KQ+ 
Sbjct: 255 VRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRT 314

Query: 291 GESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPQTYAEFVSRAQK 350
            ESL DY+ RFN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+
Sbjct: 315 TESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQR 374

Query: 351 YMSAEELLKSKRSEREYNRFSSSNYESKKDKRQRTDEGGRGRPDNGRGRPDEGDYLKKFE 410
           YMSA E   SKR           + +    KR+R+ +  +G     R R  + D  +KFE
Sbjct: 375 YMSAGEFFYSKR---------EPDGKRTDPKRERSGDKPQGSRWEKRDRSSQKDPPRKFE 434

Query: 411 KYTHTSVPQEQILMEIRDTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDE 416
           KYT T+VP EQ+LMEI+D  LL  P ++K++   R K +YCLFHRDHGH+T++   LK+E
Sbjct: 435 KYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEE 478

BLAST of Lag0018943 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-40
Identity = 98/223 (43.95%), Postives = 139/223 (62.33%), Query Frame = 0

Query: 193 KIMGAREQRKPHINLLTVKQQPGESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDER 252
           + +G R + +P   LLT+KQ+  ESLHDY+ RFN E LQ+E  ++  +L+A  +G+ DE 
Sbjct: 49  QFVGGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEH 108

Query: 253 LLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKRSEREYNRFSSSNYESKKDKRQRTDEG 312
           L  S GK  P T++E +SRAQ+YMSA E   SKR           + +    KR+R+ + 
Sbjct: 109 LSFSFGKKTPSTFSETLSRAQRYMSAGEFFYSKR---------EPDGKRTDQKRERSGDK 168

Query: 313 GRGRPDNGRGRPDEGDYLKKFEKYTHTSVPQEQILMEIRDTNLLSTPRKLKSNPDNRDKS 372
            +G     R R  + D  +KFEKYT T+VP EQ+LMEI+D  LL  P ++K     R K 
Sbjct: 169 PQGSRWEKRDRSSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKG 228

Query: 373 QYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAKAEADQ 416
           +YCLFHRDH H+T++Y  LK+E+E LIR GYL+E+  + +A Q
Sbjct: 229 RYCLFHRDHNHATQDYFDLKEEVEGLIRRGYLQEYVEEPKATQ 262

BLAST of Lag0018943 vs. NCBI nr
Match: XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 7.4e-39
Identity = 116/300 (38.67%), Postives = 162/300 (54.00%), Query Frame = 0

Query: 121 AEAKAKAAEAEAKKDHLPWKTELLNILKELGNP-----QGDLQKLKDSGGQDMDELIYQV 180
           A+     A    K DH    +E +++ K  G P       + +  +   G D++EL+ Q 
Sbjct: 40  AQQHKSPAPNGGKSDHEDRSSEPISLDK--GKPADRPESSEKRHNQKKKGFDLEELLDQA 99

Query: 181 DPPFTEEAMKAEVPQKFKIMGAREQRKPHINLLTVKQQPGESLHDYITRFNDEALQVEGY 240
           D PFTEE M             RE+R              ESLHDY+TRFN E LQVEG 
Sbjct: 100 DSPFTEEIM-------------REKRTT------------ESLHDYVTRFNKEKLQVEGL 159

Query: 241 SEGATLVAITAGLEDERLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKRSEREYNRFS 300
           ++  +L+A   G+ DE L  S GK  P T++E +SRAQ+YMSA E   SKR         
Sbjct: 160 TDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSRAQRYMSAGEFFYSKR--------- 219

Query: 301 SSNYESKKDKRQRTDEGGRGRPDNGRGRPDEGDYLKKFEKYTHTSVPQEQILMEIRDTNL 360
            SN +    KR+R+ +  +G     R R  + D  +KFEKYT T+VP EQ+LMEI++  L
Sbjct: 220 ESNGKRTDQKRERSGDKPQGSRWEKRDRSCQKDPPQKFEKYTSTTVPLEQVLMEIKNQRL 279

Query: 361 LSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAKAEADQ 416
           L  P ++ ++   R K +YCLFH DHGH+T++   LK+E+E LI  GYLKE+  + +A Q
Sbjct: 280 LKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEVEGLILRGYLKEYVEEPKATQ 303

BLAST of Lag0018943 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-33
Identity = 91/230 (39.57%), Postives = 136/230 (59.13%), Query Frame = 0

Query: 197 AREQRKPHINLLTVKQQPGESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNS 256
           AR++ KP   LLTVKQQ GE+L DYI R+N+E  QV+GY +G  L  I  GL   +L  S
Sbjct: 266 ARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMGKLWWS 325

Query: 257 IGKSQPQTYAEFVSRAQKYMSAEELLKSKRSEREYNRFSSSNYESKKDKRQRTDEGGRG- 316
           + K  P +Y+E ++RA+KY +AEE  K++  E+          ES K K+++ D+  R  
Sbjct: 326 VSKRPPTSYSEMLARAEKYANAEERFKNRNQEKG---------ESTKGKKKKDDQRERRV 385

Query: 317 -RPD----NGRGRPDEGDYLK--------KFEKYTHTSVPQEQILMEIRDTNLLSTPRKL 376
            RPD      + RP E   ++        +F  +T  + P+EQILM++R+  L  TP  +
Sbjct: 386 VRPDQSLRRNQFRPGERSEVRDTRPRLASQFTNFTELNTPREQILMQVRNPTLFRTPPPM 445

Query: 377 KSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAKAE 413
           K+NP  R+ ++YC FH+DHGH T    +LK++IE+L+R G L+E+    E
Sbjct: 446 KTNPSRRNPNKYCHFHKDHGHDTSECFELKEQIESLVRQGQLQEYVRNPE 486

BLAST of Lag0018943 vs. NCBI nr
Match: XP_024042801.1 (uncharacterized protein LOC112099618 [Citrus clementina])

HSP 1 Score: 146.4 bits (368), Expect = 5.6e-31
Identity = 85/219 (38.81%), Postives = 132/219 (60.27%), Query Frame = 0

Query: 193 KIMGAREQRKPHINLLTVKQQPGESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDER 252
           + +GAR+Q+ P    L VKQ   ESL D ITRFN E ++VE YS+   L  I  GL+  +
Sbjct: 71  QFVGARDQQFPPTYFLLVKQGKDESLKDCITRFNKEVVRVENYSDAVALTTIMVGLQPGK 130

Query: 253 LLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKRSEREYNRFSSSNYESKKDKRQRTDEG 312
              S+ K+  +T+ E +SRAQKY + +EL  +KR        ++S+     +KR+  +E 
Sbjct: 131 FHYSLAKNPARTFTELLSRAQKYSNVDELTNAKRG-------ANSDSPRVAEKRKIKEEQ 190

Query: 313 GRGRPDNGRGRPDEGDYLK-KFEKYTHTSVPQEQILMEIRDTNLLSTPRKLKSNPDNRDK 372
            + +    R        L+ +F +YT  ++P+EQ+LM+IR+ +LL  P+ +K  P+ RD+
Sbjct: 191 IKNKEKTSRLEKKGPKILQSRFPRYTPLNLPEEQVLMQIRNLDLLRKPKDIKIAPNRRDR 250

Query: 373 SQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAK 411
           S+YC +HRDH H+  +   LK+EI++LI+ GYLKEF  K
Sbjct: 251 SKYCRYHRDHRHNIEDCFDLKEEIKSLIQRGYLKEFVRK 282

BLAST of Lag0018943 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-42
Identity = 144/441 (32.65%), Postives = 202/441 (45.80%), Query Frame = 0

Query: 51  MRDPRKGKDLVEYVDESETDSKGKKTNNATSKVRGLKHTERTALRNPESRTSRRTNLRNL 110
           +RDP+KGK   E   E  T+S G K                        R    T  R  
Sbjct: 75  VRDPKKGKGPTESDTEESTNSVGSKL-----------------------RIGGNTRQRTR 134

Query: 111 IEEKRRVAKTAEAKAKAAEAEAKKDHLPWKTELLNILKELGNP-----QGDLQKLKDSGG 170
           I + R   KT +     A    K DH    +E +++ K  G P       + +      G
Sbjct: 135 IFDPR---KTKKQHKSPAPNGGKSDHDDRNSEPISLDK--GKPADRPESSEKRHSHKEKG 194

Query: 171 QDMDELIYQVDPPFTEEAMKAEVPQKFKI------------------------------- 230
            D++EL+ Q D PFTEE M+ +VP KFK+                               
Sbjct: 195 FDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEA 254

Query: 231 ----------------------------------------MGAREQRKPHINLLTVKQQP 290
                                                   +G R + +P   LLT+KQ+ 
Sbjct: 255 VRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRT 314

Query: 291 GESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPQTYAEFVSRAQK 350
            ESL DY+ RFN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+
Sbjct: 315 TESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQR 374

Query: 351 YMSAEELLKSKRSEREYNRFSSSNYESKKDKRQRTDEGGRGRPDNGRGRPDEGDYLKKFE 410
           YMSA E   SKR           + +    KR+R+ +  +G     R R  + D  +KFE
Sbjct: 375 YMSAGEFFYSKR---------EPDGKRTDPKRERSGDKPQGSRWEKRDRSSQKDPPRKFE 434

Query: 411 KYTHTSVPQEQILMEIRDTNLLSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDE 416
           KYT T+VP EQ+LMEI+D  LL  P ++K++   R K +YCLFHRDHGH+T++   LK+E
Sbjct: 435 KYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEE 478

BLAST of Lag0018943 vs. ExPASy TrEMBL
Match: A0A6J1DYL6 (uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025785 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-41
Identity = 98/223 (43.95%), Postives = 139/223 (62.33%), Query Frame = 0

Query: 193 KIMGAREQRKPHINLLTVKQQPGESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDER 252
           + +G R + +P   LLT+KQ+  ESLHDY+ RFN E LQ+E  ++  +L+A  +G+ DE 
Sbjct: 49  QFVGGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEH 108

Query: 253 LLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKRSEREYNRFSSSNYESKKDKRQRTDEG 312
           L  S GK  P T++E +SRAQ+YMSA E   SKR           + +    KR+R+ + 
Sbjct: 109 LSFSFGKKTPSTFSETLSRAQRYMSAGEFFYSKR---------EPDGKRTDQKRERSGDK 168

Query: 313 GRGRPDNGRGRPDEGDYLKKFEKYTHTSVPQEQILMEIRDTNLLSTPRKLKSNPDNRDKS 372
            +G     R R  + D  +KFEKYT T+VP EQ+LMEI+D  LL  P ++K     R K 
Sbjct: 169 PQGSRWEKRDRSSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKG 228

Query: 373 QYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAKAEADQ 416
           +YCLFHRDH H+T++Y  LK+E+E LIR GYL+E+  + +A Q
Sbjct: 229 RYCLFHRDHNHATQDYFDLKEEVEGLIRRGYLQEYVEEPKATQ 262

BLAST of Lag0018943 vs. ExPASy TrEMBL
Match: A0A6J1CNT2 (uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012805 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-39
Identity = 116/300 (38.67%), Postives = 162/300 (54.00%), Query Frame = 0

Query: 121 AEAKAKAAEAEAKKDHLPWKTELLNILKELGNP-----QGDLQKLKDSGGQDMDELIYQV 180
           A+     A    K DH    +E +++ K  G P       + +  +   G D++EL+ Q 
Sbjct: 40  AQQHKSPAPNGGKSDHEDRSSEPISLDK--GKPADRPESSEKRHNQKKKGFDLEELLDQA 99

Query: 181 DPPFTEEAMKAEVPQKFKIMGAREQRKPHINLLTVKQQPGESLHDYITRFNDEALQVEGY 240
           D PFTEE M             RE+R              ESLHDY+TRFN E LQVEG 
Sbjct: 100 DSPFTEEIM-------------REKRTT------------ESLHDYVTRFNKEKLQVEGL 159

Query: 241 SEGATLVAITAGLEDERLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKRSEREYNRFS 300
           ++  +L+A   G+ DE L  S GK  P T++E +SRAQ+YMSA E   SKR         
Sbjct: 160 TDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSRAQRYMSAGEFFYSKR--------- 219

Query: 301 SSNYESKKDKRQRTDEGGRGRPDNGRGRPDEGDYLKKFEKYTHTSVPQEQILMEIRDTNL 360
            SN +    KR+R+ +  +G     R R  + D  +KFEKYT T+VP EQ+LMEI++  L
Sbjct: 220 ESNGKRTDQKRERSGDKPQGSRWEKRDRSCQKDPPQKFEKYTSTTVPLEQVLMEIKNQRL 279

Query: 361 LSTPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAKAEADQ 416
           L  P ++ ++   R K +YCLFH DHGH+T++   LK+E+E LI  GYLKE+  + +A Q
Sbjct: 280 LKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEVEGLILRGYLKEYVEEPKATQ 303

BLAST of Lag0018943 vs. ExPASy TrEMBL
Match: A0A7N2N9G0 (Reverse transcriptase OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-29
Identity = 83/220 (37.73%), Postives = 127/220 (57.73%), Query Frame = 0

Query: 195 MGAREQRKPHINLLTVKQQPGESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDERLL 254
           +G    +K    L+++KQ+  E+L  YI+RFN EAL V+   +   + A T GL+  + L
Sbjct: 584 IGGHRYKKSTACLMSMKQREDETLRAYISRFNKEALSVDEADDKILVAAFTNGLKKGKFL 643

Query: 255 NSIGKSQPQTYAEFVSRAQKYMSAEELLKSKRSEREYNRFSSSNYESKKDKRQRTDEGGR 314
            S+ K+ P+T +E + RA KYM+AE+ L ++  +         N + +  K+ RT +   
Sbjct: 644 FSLYKNDPKTMSEVLYRATKYMNAEDALLAREEKPRKRERQEDNRQDQGRKKTRTGD--- 703

Query: 315 GRPDNGRGRPDEGDYLKKFEKYTHTSVPQEQILMEIRDTNLLSTPRKLKSNPDNRDKSQY 374
            R +  R RP  G    +F  +T  + P +Q+LM+I+D   L+ P KLKS+P+ R + +Y
Sbjct: 704 -RREERRPRPMGG----RFTSFTPLTAPVDQVLMQIKDEEALTFPGKLKSDPNKRSRDKY 763

Query: 375 CLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAKAEAD 415
           C FHRDHGH T +   LK +IEALIR G L+ F +K  AD
Sbjct: 764 CRFHRDHGHDTADCYDLKQQIEALIRQGKLQRFVSKERAD 795

BLAST of Lag0018943 vs. ExPASy TrEMBL
Match: A0A6J1E1B3 (uncharacterized protein LOC111025521 OS=Momordica charantia OX=3673 GN=LOC111025521 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-28
Identity = 81/226 (35.84%), Postives = 133/226 (58.85%), Query Frame = 0

Query: 201 RKPHINLLTVKQQPGESLHDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKS 260
           RK   +L T++Q+ GE+L +Y+TRF +E L+V   S+ + +     GL DE L   +G+ 
Sbjct: 53  RKTATHLATIRQKEGETLKEYVTRFQEEQLKVAHCSDDSAMCYFLTGLADETLTVKLGEE 112

Query: 261 QPQTYAEFVSRAQKYMSAEELLKSK--RSEREYNRFSSSNYESKKDKRQRTDEGGRG--- 320
            P T+AE + +A+K +  +ELL++K  R E++ ++  +   + K D + + D+G      
Sbjct: 113 APATFAEVLQKAKKVIDGQELLRTKTGRPEKKIDQGRAGKDKGKADSKSK-DKGSSSSSS 172

Query: 321 -----RPDNGRGRPDEGDYLKKFEKYTHTSVPQEQILMEIRDT---NLLSTPRKLKSNPD 380
                R D+ R R       + +E+YT T++P  +IL  I +T    LL  P+KL+ +P+
Sbjct: 173 QADYRRSDSSRNRS------RPYERYTPTTIPSSEILTNIEETGMEKLLKRPKKLRGDPE 232

Query: 381 NRDKSQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTAKAEA 414
            R+K +YC FHRDHGH+T N  +LK +IE LI+ GY K+F  K+ +
Sbjct: 233 KRNKDKYCRFHRDHGHNTSNCWELKRQIEDLIQYGYFKKFVGKSRS 271

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158830.12.4e-4232.65uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022159368.11.3e-4043.95uncharacterized protein LOC111025785 [Momordica charantia][more]
XP_022142767.17.4e-3938.67uncharacterized protein LOC111012805 [Momordica charantia][more]
XP_024041095.12.7e-3339.57uncharacterized protein LOC112098853 [Citrus clementina][more]
XP_024042801.15.6e-3138.81uncharacterized protein LOC112099618 [Citrus clementina][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWY01.2e-4232.65uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DYL66.5e-4143.95uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CNT23.6e-3938.67uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A7N2N9G04.4e-2937.73Reverse transcriptase OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6J1E1B32.8e-2835.84uncharacterized protein LOC111025521 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 104..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018943.1Lag0018943.1mRNA