Lag0018937 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018937
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 36757964 .. 36758275 (-)
RNA-Seq ExpressionLag0018937
SyntenyLag0018937
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGGAAGAAAGTTGGCTCGATGTTGGCAGTGATAGCCATGGTGATGCTTATGATATCCACCTCGCCCAAATCAGTGGCTGCTGCAATTATAGATGATCAGGTGATTCAACTTCCTTTGGAATCAAAAGAAAATGAAGTACTTGGAGAAAACTTCTTCTATGATTACTCGACAGAAATGTTCAAAGCTATTGGATCCATGGCCATGGGAAGCTGTCCTTCGGGTTCTTGCATCTCGGATGCTGATTGCGGATCCTGCAAATGCAAAATAGTTTCTTCTACACCCTTTCTCTATGCTAAATGTGTTTGA

mRNA sequence

ATGGGGAGGAAGAAAGTTGGCTCGATGTTGGCAGTGATAGCCATGGTGATGCTTATGATATCCACCTCGCCCAAATCAGTGGCTGCTGCAATTATAGATGATCAGGTGATTCAACTTCCTTTGGAATCAAAAGAAAATGAAGTACTTGGAGAAAACTTCTTCTATGATTACTCGACAGAAATGTTCAAAGCTATTGGATCCATGGCCATGGGAAGCTGTCCTTCGGGTTCTTGCATCTCGGATGCTGATTGCGGATCCTGCAAATGCAAAATAGTTTCTTCTACACCCTTTCTCTATGCTAAATGTGTTTGA

Coding sequence (CDS)

ATGGGGAGGAAGAAAGTTGGCTCGATGTTGGCAGTGATAGCCATGGTGATGCTTATGATATCCACCTCGCCCAAATCAGTGGCTGCTGCAATTATAGATGATCAGGTGATTCAACTTCCTTTGGAATCAAAAGAAAATGAAGTACTTGGAGAAAACTTCTTCTATGATTACTCGACAGAAATGTTCAAAGCTATTGGATCCATGGCCATGGGAAGCTGTCCTTCGGGTTCTTGCATCTCGGATGCTGATTGCGGATCCTGCAAATGCAAAATAGTTTCTTCTACACCCTTTCTCTATGCTAAATGTGTTTGA

Protein sequence

MGRKKVGSMLAVIAMVMLMISTSPKSVAAAIIDDQVIQLPLESKENEVLGENFFYDYSTEMFKAIGSMAMGSCPSGSCISDADCGSCKCKIVSSTPFLYAKCV
Homology
BLAST of Lag0018937 vs. NCBI nr
Match: KAG6577332.1 (hypothetical protein SDJN03_24906, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-13
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 1   MGRKKVGSMLAVIAMVMLMISTSPKSVAAAIIDDQVIQLPLESKENEVLGENFFYDYSTE 60
           MGRK+ G +LA++AM+++M+S S        I+D++IQLP E ++NE  G          
Sbjct: 1   MGRKRAGLVLAMVAMMLIMLSVSG-------IEDELIQLPSELEQNEGAG---------- 60

Query: 61  MFKAIGSMAMGSCPSGSCISDADCGSCKCKIVSSTPFLYAKCV 104
                     G CPSGSC S ADCGSC+CK+VS+TPFLYAKCV
Sbjct: 61  ----------GRCPSGSCSSHADCGSCRCKVVSTTPFLYAKCV 76

BLAST of Lag0018937 vs. NCBI nr
Match: KAG6577331.1 (hypothetical protein SDJN03_24905, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 0

Query: 1   MGRKKVGSMLAVIAMVMLMISTSPKSVAAAIIDDQVIQLPLESKENEVLGENFFYDYSTE 60
           MGRKK G +LA+IAM+++M+S S        I+D++IQLP E ++NE   E      S +
Sbjct: 1   MGRKKSGLVLAMIAMMLIMVSVSG-------IEDELIQLPSELEQNEG-AERLLDGVSRK 60

Query: 61  MFKAIGSMAMGSCPSGSCISDADCG-SCKCKIVSSTPFLYAKCV 104
           MFK +GS +MG CPSG C  D+ CG SC+C+IVS++PF+Y+ CV
Sbjct: 61  MFKGLGS-SMGKCPSGFCTRDSFCGRSCQCRIVSTSPFVYSTCV 95

BLAST of Lag0018937 vs. NCBI nr
Match: KAG6600683.1 (L-type lectin-domain containing receptor kinase IX.1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-06
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 4  KKVGSMLAVIAMVMLMISTSPKSVAAAIIDDQVIQLPLESKENEVLGENFFYDYSTEMFK 63
          KKVG ++A++ M+++ +S    SV  + +D+++IQLP +  ENEV   +F Y  S +MFK
Sbjct: 4  KKVGLVVAMLCMMLMSMS----SVVQSAVDNEIIQLPSQQNENEVAQNHFNYGCSRKMFK 63

Query: 64 AIGSMAMGSCPSGSCISDADCGSCKCK 91
          ++G     SCP+  C SD +C  C+CK
Sbjct: 64 SVG--FKNSCPTLLCSSDMECCPCRCK 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6577332.11.3e-1347.57hypothetical protein SDJN03_24906, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577331.12.2e-1349.04hypothetical protein SDJN03_24905, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6600683.12.7e-0640.23L-type lectin-domain containing receptor kinase IX.1, partial [Cucurbita argyros... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018937.1Lag0018937.1mRNA