Lag0018933 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018933
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr5: 36716885 .. 36717997 (-)
RNA-Seq ExpressionLag0018933
SyntenyLag0018933
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATTATTCGAGGAACCCAAAGGCGGCATCTGCAGCGAAGACATGGAGTTCAGGTACGTTTCTATATGGACTCACTTTCATAAATTACCTTATGCTTGTTTTACTACGGCATCTACAGAAGCGATTGGTAGTCTCCTTGGGAAGGTTGAAAAAGTGGATATAGGGGCTGAATCAGATTCGGAATGGGGTCGGTCATTGAGAGTTAAAATTCATATTGATGTCCAGCGACCTCTAAAACGCGGGATATTTTTAAAATCAGGGAGTAATGGAGAAGATAAATGGATCCCTGTTACGTATGAGAAGCTTTCGGATTTTTGTTATGGGTGTGGACGATTGGGGCACACTATTAAAGAATGTGAGGAACAAATCAGCTCTGCCGAAGAGGAACTTCTATACGGTGCTTTTCTTCGTGAACCAGTCCGTCTAAGGCACGAGGAAAGAGGACCTCCAACAGAAAATCTTCAAGGTAGAGGTAGGGGACGGGGAGCTTTTGGAGGACGAGGAAGATGGCGATATGAACACTTTGATGATGAAGAGGATGGAGAAACAAAATCCCATGAACAATTTGTGGAACAACCAAAACGGGTGGCGCCCCACCATACGCCGCCGTCTAGCGGTGGATCTCAGTCGGAGAGGACTAAGTCAAGCAAGGAAACGGTAGGATTCACAATTAAGGAAGGAGATCCTAGTAACGGAAAAATAATTCAAGAGGGTGGCGTTAGTTCAGGGAATAATGGGGGGTCAGAAGGAAAAAACGGAAATCAAGGAATCATAGGTGATAAATGCTTAAGCGGTGATAATTCTCAAATTTGTTCCAACGGTTCTACAAGTCAAAGTTCACAAATGGAAATAGATGCAAAACCTCACGTGGTAATAGATGACAGCTTGGAACAAAAGAACCAAGTGATAAATGTTAATGGGATCCAAAATGATGGGCCATCTATTGGGCTTACTCCTAAAGAGCCAGTAAAGGCCAAAGTATGGAAAAGGCATATACGAGAAAACAAGGCTGCAAGCAATAACTTAAAAAACCCATCGGATACTCAGCAGATGAGTGGGTTGAAACATAAGGCTGAGTGTGATATTGAAGGTGTTAAGGAAGCTCATTAG

mRNA sequence

ATGCTATTATTCGAGGAACCCAAAGGCGGCATCTGCAGCGAAGACATGGAGTTCAGGTACGTTTCTATATGGACTCACTTTCATAAATTACCTTATGCTTGTTTTACTACGGCATCTACAGAAGCGATTGGTAGTCTCCTTGGGAAGGTTGAAAAAGTGGATATAGGGGCTGAATCAGATTCGGAATGGGGTCGGTCATTGAGAGTTAAAATTCATATTGATGTCCAGCGACCTCTAAAACGCGGGATATTTTTAAAATCAGGGAGTAATGGAGAAGATAAATGGATCCCTGTTACGTATGAGAAGCTTTCGGATTTTTGTTATGGGTGTGGACGATTGGGGCACACTATTAAAGAATGTGAGGAACAAATCAGCTCTGCCGAAGAGGAACTTCTATACGGTGCTTTTCTTCGTGAACCAGTCCGTCTAAGGCACGAGGAAAGAGGACCTCCAACAGAAAATCTTCAAGGTAGAGGTAGGGGACGGGGAGCTTTTGGAGGACGAGGAAGATGGCGATATGAACACTTTGATGATGAAGAGGATGGAGAAACAAAATCCCATGAACAATTTGTGGAACAACCAAAACGGGTGGCGCCCCACCATACGCCGCCGTCTAGCGGTGGATCTCAGTCGGAGAGGACTAAGTCAAGCAAGGAAACGGTAGGATTCACAATTAAGGAAGGAGATCCTAGTAACGGAAAAATAATTCAAGAGGGTGGCGTTAGTTCAGGGAATAATGGGGGGTCAGAAGGAAAAAACGGAAATCAAGGAATCATAGGTGATAAATGCTTAAGCGGTGATAATTCTCAAATTTGTTCCAACGGTTCTACAAGTCAAAGTTCACAAATGGAAATAGATGCAAAACCTCACGTGGTAATAGATGACAGCTTGGAACAAAAGAACCAAGTGATAAATGTTAATGGGATCCAAAATGATGGGCCATCTATTGGGCTTACTCCTAAAGAGCCAGTAAAGGCCAAAGTATGGAAAAGGCATATACGAGAAAACAAGGCTGCAAGCAATAACTTAAAAAACCCATCGGATACTCAGCAGATGAGTGGGTTGAAACATAAGGCTGAGTGTGATATTGAAGGTGTTAAGGAAGCTCATTAG

Coding sequence (CDS)

ATGCTATTATTCGAGGAACCCAAAGGCGGCATCTGCAGCGAAGACATGGAGTTCAGGTACGTTTCTATATGGACTCACTTTCATAAATTACCTTATGCTTGTTTTACTACGGCATCTACAGAAGCGATTGGTAGTCTCCTTGGGAAGGTTGAAAAAGTGGATATAGGGGCTGAATCAGATTCGGAATGGGGTCGGTCATTGAGAGTTAAAATTCATATTGATGTCCAGCGACCTCTAAAACGCGGGATATTTTTAAAATCAGGGAGTAATGGAGAAGATAAATGGATCCCTGTTACGTATGAGAAGCTTTCGGATTTTTGTTATGGGTGTGGACGATTGGGGCACACTATTAAAGAATGTGAGGAACAAATCAGCTCTGCCGAAGAGGAACTTCTATACGGTGCTTTTCTTCGTGAACCAGTCCGTCTAAGGCACGAGGAAAGAGGACCTCCAACAGAAAATCTTCAAGGTAGAGGTAGGGGACGGGGAGCTTTTGGAGGACGAGGAAGATGGCGATATGAACACTTTGATGATGAAGAGGATGGAGAAACAAAATCCCATGAACAATTTGTGGAACAACCAAAACGGGTGGCGCCCCACCATACGCCGCCGTCTAGCGGTGGATCTCAGTCGGAGAGGACTAAGTCAAGCAAGGAAACGGTAGGATTCACAATTAAGGAAGGAGATCCTAGTAACGGAAAAATAATTCAAGAGGGTGGCGTTAGTTCAGGGAATAATGGGGGGTCAGAAGGAAAAAACGGAAATCAAGGAATCATAGGTGATAAATGCTTAAGCGGTGATAATTCTCAAATTTGTTCCAACGGTTCTACAAGTCAAAGTTCACAAATGGAAATAGATGCAAAACCTCACGTGGTAATAGATGACAGCTTGGAACAAAAGAACCAAGTGATAAATGTTAATGGGATCCAAAATGATGGGCCATCTATTGGGCTTACTCCTAAAGAGCCAGTAAAGGCCAAAGTATGGAAAAGGCATATACGAGAAAACAAGGCTGCAAGCAATAACTTAAAAAACCCATCGGATACTCAGCAGATGAGTGGGTTGAAACATAAGGCTGAGTGTGATATTGAAGGTGTTAAGGAAGCTCATTAG

Protein sequence

MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKECEEQISSAEEELLYGAFLREPVRLRHEERGPPTENLQGRGRGRGAFGGRGRWRYEHFDDEEDGETKSHEQFVEQPKRVAPHHTPPSSGGSQSERTKSSKETVGFTIKEGDPSNGKIIQEGGVSSGNNGGSEGKNGNQGIIGDKCLSGDNSQICSNGSTSQSSQMEIDAKPHVVIDDSLEQKNQVINVNGIQNDGPSIGLTPKEPVKAKVWKRHIRENKAASNNLKNPSDTQQMSGLKHKAECDIEGVKEAH
Homology
BLAST of Lag0018933 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-24
Identity = 74/190 (38.95%), Postives = 109/190 (57.37%), Query Frame = 0

Query: 15  DMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHID 74
           DM F + + W   H +P+ C +T     +G+ LG VE+++ G  +D   G  +RV++ ID
Sbjct: 117 DMNFNFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIE-GDGADGWAGPFIRVRVKID 176

Query: 75  VQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKECEE--QISSAEEELL 134
           V +PL+RGI LK+ S+G+D W P+ YEKL DFCY CG++GH+ +ECE+  ++ +      
Sbjct: 177 VSKPLRRGIKLKN-SDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQ 236

Query: 135 YGAFLREPVRLRHEERGPPTENLQGR----GRG---RGAFGGRGRWRY--EHFDDEEDGE 194
           YG +LR    L  +    P E +  R    GRG    G  GGRG WR   E++ D  DG 
Sbjct: 237 YGDWLR--ATLLKKSVSHPEEEVFWRGGRFGRGHQVNGGRGGRGDWRRRDENWRD-IDGP 296

BLAST of Lag0018933 vs. NCBI nr
Match: KAG5542538.1 (hypothetical protein RHGRI_022172 [Rhododendron griersonianum])

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-20
Identity = 51/130 (39.23%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 14  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHI 73
           ED++F +   W   H LP       + EAI SL+GK++   + A   S +   LR++I I
Sbjct: 102 EDLDFSHSPFWVQIHGLPLGQMNRKNGEAIASLIGKLDSSGMKAFDTSTFKDYLRLRIII 161

Query: 74  DVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKECEEQISSAEEELLY 133
           D+ +PLK+G FLK     ED W+   YE+LSDFCY CG +GH + +C ++ +    EL Y
Sbjct: 162 DITKPLKKGFFLKRREK-EDLWVRFKYERLSDFCYVCGLIGHGLNDCTKKFTGNRSELEY 221

Query: 134 GAFLREPVRL 144
           G+FLR  + +
Sbjct: 222 GSFLRAEISI 230

BLAST of Lag0018933 vs. NCBI nr
Match: KAG5556475.1 (hypothetical protein RHGRI_006921 [Rhododendron griersonianum])

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-20
Identity = 51/130 (39.23%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 14  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHI 73
           ED++F +   W   H LP       + EAI SL+GK++   + A   S +   LR++I I
Sbjct: 102 EDLDFSHSPFWVQIHGLPLGQMNRKNGEAIASLIGKLDSSGMKAFDTSTFKDYLRLRIII 161

Query: 74  DVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKECEEQISSAEEELLY 133
           D+ +PLK+G FLK     ED W+   YE+LSDFCY CG +GH + +C ++ +    EL Y
Sbjct: 162 DITKPLKKGFFLKRREK-EDLWVRFKYERLSDFCYVCGLIGHGLNDCTKKFTGNRSELEY 221

Query: 134 GAFLREPVRL 144
           G+FLR  + +
Sbjct: 222 GSFLRAEISI 230

BLAST of Lag0018933 vs. NCBI nr
Match: KAG5515315.1 (hypothetical protein RHGRI_036380 [Rhododendron griersonianum])

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-20
Identity = 51/130 (39.23%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 14  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHI 73
           ED++F +   W   H LP       + EAI SL+GK++   + A   S +   LR++I I
Sbjct: 17  EDLDFSHSPFWVQIHGLPLGQMNRKNGEAIASLIGKLDSSGMKAFDTSTFKDYLRLRIII 76

Query: 74  DVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKECEEQISSAEEELLY 133
           D+ +PLK+G FLK     ED W+   YE+LSDFCY CG +GH + +C ++ +    EL Y
Sbjct: 77  DITKPLKKGFFLKRREK-EDLWVRFKYERLSDFCYVCGLIGHGLNDCTKKFTGNRSELEY 136

Query: 134 GAFLREPVRL 144
           G+FLR  + +
Sbjct: 137 GSFLRAEISI 145

BLAST of Lag0018933 vs. NCBI nr
Match: XP_042979975.1 (uncharacterized protein LOC122310162 [Carya illinoinensis])

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-20
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 0

Query: 1   MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESD 60
           +++ +E  G    + + F   S W  FH LP +C T    E IGS +G+VE+VD+  +  
Sbjct: 206 LVVLKEFDGFTPLKQVNFTSESFWVRFHNLPLSCMTEVRGEQIGSTVGRVERVDVQGDG- 265

Query: 61  SEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKEC 120
           S WG+ LRV+IH+D+ +PL RG  L     G + WIP +YEK+   C+ CG + H + EC
Sbjct: 266 SGWGKFLRVQIHMDLNQPLARGRTLM--VKGNEIWIPFSYEKMPRICFSCGCIEHGLNEC 325

Query: 121 EEQISSAEEELLYGAFLR 139
           +E      +E  YG +LR
Sbjct: 326 KEGGRIVGDENQYGQWLR 340

BLAST of Lag0018933 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-24
Identity = 74/190 (38.95%), Postives = 109/190 (57.37%), Query Frame = 0

Query: 15  DMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHID 74
           DM F + + W   H +P+ C +T     +G+ LG VE+++ G  +D   G  +RV++ ID
Sbjct: 117 DMNFNFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIE-GDGADGWAGPFIRVRVKID 176

Query: 75  VQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKECEE--QISSAEEELL 134
           V +PL+RGI LK+ S+G+D W P+ YEKL DFCY CG++GH+ +ECE+  ++ +      
Sbjct: 177 VSKPLRRGIKLKN-SDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQ 236

Query: 135 YGAFLREPVRLRHEERGPPTENLQGR----GRG---RGAFGGRGRWRY--EHFDDEEDGE 194
           YG +LR    L  +    P E +  R    GRG    G  GGRG WR   E++ D  DG 
Sbjct: 237 YGDWLR--ATLLKKSVSHPEEEVFWRGGRFGRGHQVNGGRGGRGDWRRRDENWRD-IDGP 296

BLAST of Lag0018933 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-20
Identity = 53/139 (38.13%), Postives = 75/139 (53.96%), Query Frame = 0

Query: 1   MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESD 60
           +++ + P       DM+FR VS+W HF  L  AC        +G+ +G  E V+  A + 
Sbjct: 107 LIIIDNPVSLTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNF 166

Query: 61  SEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKEC 120
             WG  LRV++  DV +PL RGI L         WIP+ YE+L DF Y CGRL H +K+C
Sbjct: 167 C-WGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC 226

Query: 121 EE-QISSAEEELLYGAFLR 139
            +  + S  + L YG +LR
Sbjct: 227 SDCCVDSVSKNLQYGPWLR 244

BLAST of Lag0018933 vs. ExPASy TrEMBL
Match: A0A5C7GZQ4 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_025894 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.5e-20
Identity = 50/141 (35.46%), Postives = 87/141 (61.70%), Query Frame = 0

Query: 1   MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESD 60
           +L+ EEP G     +M+F  V+ W   HK+P  C T+     +GS++G+V+++D G   D
Sbjct: 105 LLVLEEPTGKGDIREMKFDKVAFWIQIHKVPLLCMTSEIGRFLGSMIGEVKEIDDGGSGD 164

Query: 61  SEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKEC 120
              G+ +RV++ +DV +PL+R + +    +G++  + + YE+L D CY CGR+GH +++C
Sbjct: 165 CV-GKYIRVRVVVDVTKPLRRMLRVDVLGDGKETNMLLRYERLPDHCYRCGRIGHVVRDC 224

Query: 121 EEQISSAEEE---LLYGAFLR 139
               SS E E   L++G++LR
Sbjct: 225 SIVPSSVEPEDYNLMFGSWLR 244

BLAST of Lag0018933 vs. ExPASy TrEMBL
Match: A0A5C7HBH6 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019455 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.6e-20
Identity = 53/166 (31.93%), Postives = 90/166 (54.22%), Query Frame = 0

Query: 1   MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESD 60
           +++ E P+G      ++F     W   H++P  C      + +   +G+V  V+I +ES 
Sbjct: 71  LIVLEIPEGPGNISHLKFNKADFWIQIHEIPIMCMNRRIAKWLAEQIGEV--VEIPSESR 130

Query: 61  SEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKEC 120
             WGR LRVK+ ID+ +PLKR + LK G + E   + + YE++ +FC+ CGRLGH IKEC
Sbjct: 131 ECWGRFLRVKVRIDISKPLKRWLRLKLGKDDEVTVVSLKYERVPEFCFACGRLGHGIKEC 190

Query: 121 EEQISSAE----EELLYGAFLREPVRLRHEERGPPTENLQGRGRGR 163
            ++ +  +      + YG++L+ P+  + + RG    N     R +
Sbjct: 191 LDEKAMKDALDGSIIKYGSWLKAPISDKPKNRGGMFGNASSSKRSK 234

BLAST of Lag0018933 vs. ExPASy TrEMBL
Match: A0A5C7H9Y2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019269 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.6e-20
Identity = 53/164 (32.32%), Postives = 91/164 (55.49%), Query Frame = 0

Query: 1   MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESD 60
           +L+  E  G     D++FRYV  W   H LP AC        +G L+G+V+++D G ES 
Sbjct: 105 LLVLREASGSEKVTDLQFRYVPFWIQLHNLPLACLNREIGLHLGGLVGQVKEIDAG-ESG 164

Query: 61  SEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLGHTIKEC 120
              G+ +R+++ IDV  PLKRG+ +  G + +   + + YE+L +FCY CG++GH +++C
Sbjct: 165 ECVGQFIRIRVLIDVMNPLKRGLRVALGDDEKVNEVMICYERLPNFCYYCGKIGHLVRDC 224

Query: 121 ---EEQISSAEEELLYGAFLREPVRLRHEERGPPTENLQGRGRG 162
               ++I+S+     +G ++R   R R +  G    + +G   G
Sbjct: 225 PLNTKEITSS-SSFKFGPWMRAVSRTRSKGTGEKKNSPEGSREG 266

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149484.12.7e-2438.95uncharacterized protein LOC111017902 [Momordica charantia][more]
KAG5542538.11.0e-2039.23hypothetical protein RHGRI_022172 [Rhododendron griersonianum][more]
KAG5556475.11.0e-2039.23hypothetical protein RHGRI_006921 [Rhododendron griersonianum][more]
KAG5515315.11.0e-2039.23hypothetical protein RHGRI_036380 [Rhododendron griersonianum][more]
XP_042979975.12.3e-2038.41uncharacterized protein LOC122310162 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D7651.3e-2438.95uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1BSZ11.9e-2038.13uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A5C7GZQ42.5e-2035.46CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02589... [more]
A0A5C7HBH69.6e-2031.93CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01945... [more]
A0A5C7H9Y29.6e-2032.32CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01926... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 110..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 339..354
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 355..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..370
NoneNo IPR availablePANTHERPTHR31286:SF62SUBFAMILY NOT NAMEDcoord: 20..261
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 73..121
e-value: 6.9E-13
score: 48.1
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 20..261
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 107..122
score: 9.652719

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018933.1Lag0018933.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding