Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCCTCAAATATCTCCTTCTCTCTCCCTTTCTTTTCCTCTGCTTAAGCTCCACCTTCGCCAACAAACTTCTCAACTCCAACTATGGACACGGTTCTGGTCCCGATATCGGGTTTGGACCGAGAGCTGGGCCGGGTGTTGAGGGAGACGCAATCAATATCGGAGCTGGTCCAAAAGCCGGGCCAAGGGCTGGCCCAGGAGGTAAGGGAGTAAGCAATTTTGGGGCCGGTCCGAAAGCTGGGCCAGGAGGAGTAAACCATGTCGGGGGTGGCCCGAGAGCTGGGCCGGGAATTGAGGGAGGAGTGAATGTTGGGGCTGGGCCGAGAGCGGGGCCGGGAGCTAGGAGAGGTGTTGATCCAATTGTTAATGGAGTCGGAGTTGGATATAGGTCAGGATTTGGGCCGGGCTGGAATGGGCCAGGAGTTGGGCTGTACGATGATTGCATATTGGGCTACGTTTGTCCAGCGAATGAACGTAGAGAATGCAACAAATTTGCTTATGAAAGTTGCGAATCTTTTAACTTTCATCCATTGACTGCTTCGATGGATCTGCACGAAGTTGAAATCAATTGGGCCAAAAGCAAGCCTGTTGAAATGGCCCAACATCGCAAATCTGAATTCCACGTATCACCGCCCACTAAGAAGGCCCAAAATGGTGTCTAA
mRNA sequence
ATGTCTTCCCTCAAATATCTCCTTCTCTCTCCCTTTCTTTTCCTCTGCTTAAGCTCCACCTTCGCCAACAAACTTCTCAACTCCAACTATGGACACGGTTCTGGTCCCGATATCGGGTTTGGACCGAGAGCTGGGCCGGGTGTTGAGGGAGACGCAATCAATATCGGAGCTGGTCCAAAAGCCGGGCCAAGGGCTGGCCCAGGAGGTAAGGGAGTAAGCAATTTTGGGGCCGGTCCGAAAGCTGGGCCAGGAGGAGTAAACCATGTCGGGGGTGGCCCGAGAGCTGGGCCGGGAATTGAGGGAGGAGTGAATGTTGGGGCTGGGCCGAGAGCGGGGCCGGGAGCTAGGAGAGGTGTTGATCCAATTGTTAATGGAGTCGGAGTTGGATATAGGTCAGGATTTGGGCCGGGCTGGAATGGGCCAGGAGTTGGGCTGTACGATGATTGCATATTGGGCTACGTTTGTCCAGCGAATGAACGTAGAGAATGCAACAAATTTGCTTATGAAAGTTGCGAATCTTTTAACTTTCATCCATTGACTGCTTCGATGGATCTGCACGAAGTTGAAATCAATTGGGCCAAAAGCAAGCCTGTTGAAATGGCCCAACATCGCAAATCTGAATTCCACGTATCACCGCCCACTAAGAAGGCCCAAAATGGTGTCTAA
Coding sequence (CDS)
ATGTCTTCCCTCAAATATCTCCTTCTCTCTCCCTTTCTTTTCCTCTGCTTAAGCTCCACCTTCGCCAACAAACTTCTCAACTCCAACTATGGACACGGTTCTGGTCCCGATATCGGGTTTGGACCGAGAGCTGGGCCGGGTGTTGAGGGAGACGCAATCAATATCGGAGCTGGTCCAAAAGCCGGGCCAAGGGCTGGCCCAGGAGGTAAGGGAGTAAGCAATTTTGGGGCCGGTCCGAAAGCTGGGCCAGGAGGAGTAAACCATGTCGGGGGTGGCCCGAGAGCTGGGCCGGGAATTGAGGGAGGAGTGAATGTTGGGGCTGGGCCGAGAGCGGGGCCGGGAGCTAGGAGAGGTGTTGATCCAATTGTTAATGGAGTCGGAGTTGGATATAGGTCAGGATTTGGGCCGGGCTGGAATGGGCCAGGAGTTGGGCTGTACGATGATTGCATATTGGGCTACGTTTGTCCAGCGAATGAACGTAGAGAATGCAACAAATTTGCTTATGAAAGTTGCGAATCTTTTAACTTTCATCCATTGACTGCTTCGATGGATCTGCACGAAGTTGAAATCAATTGGGCCAAAAGCAAGCCTGTTGAAATGGCCCAACATCGCAAATCTGAATTCCACGTATCACCGCCCACTAAGAAGGCCCAAAATGGTGTCTAA
Protein sequence
MSSLKYLLLSPFLFLCLSSTFANKLLNSNYGHGSGPDIGFGPRAGPGVEGDAINIGAGPKAGPRAGPGGKGVSNFGAGPKAGPGGVNHVGGGPRAGPGIEGGVNVGAGPRAGPGARRGVDPIVNGVGVGYRSGFGPGWNGPGVGLYDDCILGYVCPANERRECNKFAYESCESFNFHPLTASMDLHEVEINWAKSKPVEMAQHRKSEFHVSPPTKKAQNGV
Homology
BLAST of Lag0018806 vs. NCBI nr
Match:
XP_022929340.1 (fibroin heavy chain-like [Cucurbita moschata])
HSP 1 Score: 175.6 bits (444), Expect = 4.6e-40
Identity = 121/250 (48.40%), Postives = 147/250 (58.80%), Query Frame = 0
Query: 1 MSSLKYLLLSPFLFLCLSSTFANKLLNSNYGHGSGPDIGFG----PRAGPGVEGDAINIG 60
M SLKY LLSPF+FLCLS TFAN++ NS+ GSG D+G G P AGPGVE N+
Sbjct: 1 MGSLKYFLLSPFVFLCLSCTFANRVPNSD--DGSGFDVGAGPGAIPTAGPGVEKGVSNVR 60
Query: 61 AGP-------------KAGPRAGPGGKG-----VSNFGAGPKAGPGGVNHVGG------- 120
AGP KAGP+AGPG +G + AGPKAGPG V
Sbjct: 61 AGPAAEGWVNDVWAGLKAGPKAGPGAEGWVSDVKAGLRAGPKAGPGAEGWVSNVKAGPTV 120
Query: 121 GPRAGPGIEGGVNVGAGPRAGPGARRGVDPIVNGVG------VGYRSGF------GPGWN 180
GPRA PG EGGV+ G G RR VDP++NG+G +GYRSGF G W
Sbjct: 121 GPRAWPGTEGGVSSSEG-----GVRRDVDPMINGLGLGLGVDIGYRSGFRAGLGGGEHWF 180
Query: 181 GPGVGL-----YDDCILGYVCPANERRECNKFAYESCESFNFHPLTASMDLHEVEINWAK 204
GPG+G+ ++C LGYVCP RR C+KF+Y +C+++ FHPL ASM LHEVE+ WAK
Sbjct: 181 GPGIGIGGGGVSNECTLGYVCPTYGRRGCDKFSYGNCDTYGFHPLMASMHLHEVEMKWAK 240
BLAST of Lag0018806 vs. NCBI nr
Match:
KGN56231.1 (hypothetical protein Csa_011503 [Cucumis sativus])
HSP 1 Score: 169.5 bits (428), Expect = 3.3e-38
Identity = 121/236 (51.27%), Postives = 145/236 (61.44%), Query Frame = 0
Query: 1 MSSLKYLLLSPFLFLCLSSTFANKLLNSNYGHGSG------PDIGFGPRAGPGVEGDAIN 60
M+SLKY LLSPFLFLCLS TFAN + N + G G G PD P AGP V+ N
Sbjct: 1 MASLKYFLLSPFLFLCLSYTFANGVFNYDDGLGFGSMSSPTPD----PSAGP-VDRGVSN 60
Query: 61 IGAGPKAGPRAGPGGKGVSNF----GAGPKAGPG---GVNHVGGGPRAGPGIEGGVNVGA 120
G GPKAGPRAG G G+SN GPKAGPG +++VG GPR P + G ++ A
Sbjct: 61 FGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSNVGAGPRV-PKL-GVSSIEA 120
Query: 121 GPRAGPGARRGVDPIVNGVGVGY-----------RSGFGP---GWNGPGVGL---YDDCI 180
GPRAGP +GVDPIV G+GVG + G P GW GPG + Y++C+
Sbjct: 121 GPRAGP---KGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWYGPGPIIQEPYNNCM 180
Query: 181 LGYVCPANERRECNKFAYESCESFNFHPLTASMDLHEVEINWAKSKPVEMAQHRKS 207
LGYVCP N C K Y CES+NF PL+AS +LH+V+INWAKSK VE AQH +S
Sbjct: 181 LGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSKSVETAQHGES 226
BLAST of Lag0018806 vs. NCBI nr
Match:
KAG6577377.1 (hypothetical protein SDJN03_24951, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 168.3 bits (425), Expect = 7.4e-38
Identity = 128/291 (43.99%), Postives = 157/291 (53.95%), Query Frame = 0
Query: 1 MSSLKYLLLSPFLFLCLSSTFANKLLNSNYGHGSGPDIGFG----PRAGPGVEGDAINIG 60
M SLKY LLSPF+FLCLS TFAN++ NS+ GSG D+G G P AGPGVE N+
Sbjct: 1 MGSLKYFLLSPFVFLCLSCTFANRVPNSD--DGSGFDVGAGPGAIPTAGPGVEKGVSNVR 60
Query: 61 AGP-------------KAGPRAGPGGKG-VSNF--------GAGPKAGPGGVNHVG---- 120
AGP KAGP+AGPG +G VS+ AGPKAGPG V
Sbjct: 61 AGPAAEGWVNDVRAGLKAGPKAGPGAEGWVSDVKAGLRAGPKAGPKAGPGAEEWVSDVKA 120
Query: 121 ---GGPRAGPGIEGGVN-----VGAGPRAGPGA--------------------------- 180
GP+AGPG EG V+ + AGP+AGPGA
Sbjct: 121 GPRAGPKAGPGAEGWVSDVKAGLRAGPKAGPGAEGWVSNVKAGPTVGPRAWPGTEGGVSS 180
Query: 181 -----RRGVDPIVNGVG------VGYRSGF------GPGWNGPGVGL-----YDDCILGY 204
RR VDP++NG+G +GYRSGF G W GPG+G+ ++C LGY
Sbjct: 181 SEGGVRRDVDPMINGLGLGLGVDIGYRSGFRAGLGGGEHWFGPGIGIGGGGVSNECTLGY 240
BLAST of Lag0018806 vs. NCBI nr
Match:
KAA0060661.1 (hypothetical protein E6C27_scaffold22G005540 [Cucumis melo var. makuwa] >TYK02214.1 hypothetical protein E5676_scaffold18G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 157.5 bits (397), Expect = 1.3e-34
Identity = 112/221 (50.68%), Postives = 135/221 (61.09%), Query Frame = 0
Query: 1 MSSLKYLLLSPFLFLCLSSTFANKLLNSNYG--HGSGPDIGFGPRAGPGVEGDAINIGAG 60
M+SLKY LLSPFLFLCLS TFA+ + N ++G GS P AGPGV+ NIG G
Sbjct: 1 MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
Query: 61 PKAGPRAGPG-GKGVSNFG--AGPKAGPG-------GVNHVGGGPRAGPGIEGGVNVGAG 120
PKAGPRAG G G G+S+ GPKAGP GV+ + GPRAGP G VG G
Sbjct: 61 PKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVG 120
Query: 121 PRAGPGARRGVDPIVNGVGVGYRSGFGPGWNGPGVGL---YDDCILGYVCPANERRECNK 180
+ P+ G +G + G G GW PG + Y +C+LGYVCP N C+K
Sbjct: 121 V--------DLPPVFGGPKIGLKPGPG-GWYRPGPIIQEPYGNCMLGYVCP-NRPWACSK 180
Query: 181 FAYESCESFNFHPLTASMDLHEVEINWAKSKPVEMAQHRKS 207
FAY C+S+NFHPL+AS DLHEV+INWAKSKP AQH +S
Sbjct: 181 FAYGLCDSYNFHPLSASTDLHEVKINWAKSKPDATAQHGES 211
BLAST of Lag0018806 vs. NCBI nr
Match:
XP_023551824.1 (fibroin heavy chain-like isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 148.3 bits (373), Expect = 7.9e-32
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 0
Query: 37 DIGFGPRAGPGVEGDAINIGAGPKAGPRAGPGGKG-VSNFGAGPKAGPGGVNHVGGGPRA 96
D+ GP+AGPG EG ++ AGP+AGP+AGPG +G V+N AGP GPRA
Sbjct: 38 DVWAGPKAGPGAEGWVSDVKAGPRAGPKAGPGAEGWVNNVKAGPTV----------GPRA 97
Query: 97 GPGIEGGVNVGAGPRAGPGARRGVDPIVNGVG------VGYRSGF------GPGWNGPGV 156
PG EGGV+ G G RR VDP++NG+G +GYRSGF G W GPG+
Sbjct: 98 WPGTEGGVSSSEG-----GVRRDVDPMINGLGLGLGVDIGYRSGFRAGVGGGEHWFGPGI 157
Query: 157 ---GLYDDCILGYVCPANERRECNKFAYESCESFNFHPLTASMDLHEVEINWAK-SKPVE 204
G+ ++C LGYVCP RR C+KF+Y +C+S+ FHPL ASM LHEVE+ WAK SKP
Sbjct: 158 GGRGVSNECTLGYVCPTYGRRGCDKFSYGNCDSYGFHPLMASMQLHEVEMKWAKGSKPAA 206
BLAST of Lag0018806 vs. ExPASy TrEMBL
Match:
A0A6J1EU53 (fibroin heavy chain-like OS=Cucurbita moschata OX=3662 GN=LOC111435943 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 2.2e-40
Identity = 121/250 (48.40%), Postives = 147/250 (58.80%), Query Frame = 0
Query: 1 MSSLKYLLLSPFLFLCLSSTFANKLLNSNYGHGSGPDIGFG----PRAGPGVEGDAINIG 60
M SLKY LLSPF+FLCLS TFAN++ NS+ GSG D+G G P AGPGVE N+
Sbjct: 1 MGSLKYFLLSPFVFLCLSCTFANRVPNSD--DGSGFDVGAGPGAIPTAGPGVEKGVSNVR 60
Query: 61 AGP-------------KAGPRAGPGGKG-----VSNFGAGPKAGPGGVNHVGG------- 120
AGP KAGP+AGPG +G + AGPKAGPG V
Sbjct: 61 AGPAAEGWVNDVWAGLKAGPKAGPGAEGWVSDVKAGLRAGPKAGPGAEGWVSNVKAGPTV 120
Query: 121 GPRAGPGIEGGVNVGAGPRAGPGARRGVDPIVNGVG------VGYRSGF------GPGWN 180
GPRA PG EGGV+ G G RR VDP++NG+G +GYRSGF G W
Sbjct: 121 GPRAWPGTEGGVSSSEG-----GVRRDVDPMINGLGLGLGVDIGYRSGFRAGLGGGEHWF 180
Query: 181 GPGVGL-----YDDCILGYVCPANERRECNKFAYESCESFNFHPLTASMDLHEVEINWAK 204
GPG+G+ ++C LGYVCP RR C+KF+Y +C+++ FHPL ASM LHEVE+ WAK
Sbjct: 181 GPGIGIGGGGVSNECTLGYVCPTYGRRGCDKFSYGNCDTYGFHPLMASMHLHEVEMKWAK 240
BLAST of Lag0018806 vs. ExPASy TrEMBL
Match:
A0A0A0L7X7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104850 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.6e-38
Identity = 121/236 (51.27%), Postives = 145/236 (61.44%), Query Frame = 0
Query: 1 MSSLKYLLLSPFLFLCLSSTFANKLLNSNYGHGSG------PDIGFGPRAGPGVEGDAIN 60
M+SLKY LLSPFLFLCLS TFAN + N + G G G PD P AGP V+ N
Sbjct: 1 MASLKYFLLSPFLFLCLSYTFANGVFNYDDGLGFGSMSSPTPD----PSAGP-VDRGVSN 60
Query: 61 IGAGPKAGPRAGPGGKGVSNF----GAGPKAGPG---GVNHVGGGPRAGPGIEGGVNVGA 120
G GPKAGPRAG G G+SN GPKAGPG +++VG GPR P + G ++ A
Sbjct: 61 FGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSNVGAGPRV-PKL-GVSSIEA 120
Query: 121 GPRAGPGARRGVDPIVNGVGVGY-----------RSGFGP---GWNGPGVGL---YDDCI 180
GPRAGP +GVDPIV G+GVG + G P GW GPG + Y++C+
Sbjct: 121 GPRAGP---KGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWYGPGPIIQEPYNNCM 180
Query: 181 LGYVCPANERRECNKFAYESCESFNFHPLTASMDLHEVEINWAKSKPVEMAQHRKS 207
LGYVCP N C K Y CES+NF PL+AS +LH+V+INWAKSK VE AQH +S
Sbjct: 181 LGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSKSVETAQHGES 226
BLAST of Lag0018806 vs. ExPASy TrEMBL
Match:
A0A5A7V4J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00010 PE=4 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 6.3e-35
Identity = 112/221 (50.68%), Postives = 135/221 (61.09%), Query Frame = 0
Query: 1 MSSLKYLLLSPFLFLCLSSTFANKLLNSNYG--HGSGPDIGFGPRAGPGVEGDAINIGAG 60
M+SLKY LLSPFLFLCLS TFA+ + N ++G GS P AGPGV+ NIG G
Sbjct: 1 MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
Query: 61 PKAGPRAGPG-GKGVSNFG--AGPKAGPG-------GVNHVGGGPRAGPGIEGGVNVGAG 120
PKAGPRAG G G G+S+ GPKAGP GV+ + GPRAGP G VG G
Sbjct: 61 PKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVG 120
Query: 121 PRAGPGARRGVDPIVNGVGVGYRSGFGPGWNGPGVGL---YDDCILGYVCPANERRECNK 180
+ P+ G +G + G G GW PG + Y +C+LGYVCP N C+K
Sbjct: 121 V--------DLPPVFGGPKIGLKPGPG-GWYRPGPIIQEPYGNCMLGYVCP-NRPWACSK 180
Query: 181 FAYESCESFNFHPLTASMDLHEVEINWAKSKPVEMAQHRKS 207
FAY C+S+NFHPL+AS DLHEV+INWAKSKP AQH +S
Sbjct: 181 FAYGLCDSYNFHPLSASTDLHEVKINWAKSKPDATAQHGES 211
BLAST of Lag0018806 vs. ExPASy TrEMBL
Match:
A0A6I8PB04 (Bassoon presynaptic cytomatrix protein OS=Ornithorhynchus anatinus OX=9258 GN=BSN PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 6.6e-08
Identity = 62/123 (50.41%), Postives = 65/123 (52.85%), Query Frame = 0
Query: 33 GSGPDIGFGPRAGPGVEGDAINIGAGPKAGPRAGPG-GKGVS-------NFGAGPKAGPG 92
G+GP G GPRAGPG G G GP AGPRAGPG G G GAGP+AGPG
Sbjct: 358 GAGPGAGVGPRAGPGA-GPRARPGPGPGAGPRAGPGTGPGAGPRAGPGPGPGAGPRAGPG 417
Query: 93 GVNHVGGGPRAGPGIEGGVNVGAGPRAGPGARRGVDPIVNGVGVGYRSGFGPGWN---GP 145
G GPR GPG G G GPRAGPG P G G G R+G GPG GP
Sbjct: 418 ----PGPGPRPGPGPGPGPGTGPGPRAGPGPGPRAGP---GPGPGPRAGPGPGPGPRAGP 472
BLAST of Lag0018806 vs. ExPASy TrEMBL
Match:
U3KJI4 (Uncharacterized protein OS=Ficedula albicollis OX=59894 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 8.6e-08
Identity = 60/112 (53.57%), Postives = 62/112 (55.36%), Query Frame = 0
Query: 33 GSGPDIGFGPRAGPGVEGDAINIGAGPKAGPRAGPGGKGVSNFGAGPKAGPGGVNHVGGG 92
G+GP G GP AGPG G GAGP AGP AGPG + GAGP AGPG G G
Sbjct: 1 GAGP--GAGPGAGPGA-GPGAGPGAGPGAGPGAGPGAGPGAGPGAGPGAGPGA--GPGAG 60
Query: 93 PRAGPGIEGGVNVGAGPRAGPGARRGVDPIVNGVGVGYRSGFGPGWNGPGVG 145
P AGPG G GAGP AGPGA G P G G G G GPG GPG G
Sbjct: 61 PGAGPGAGPGAGPGAGPGAGPGAGPGAGP---GAGPGAGPGAGPG-AGPGAG 103
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022929340.1 | 4.6e-40 | 48.40 | fibroin heavy chain-like [Cucurbita moschata] | [more] |
KGN56231.1 | 3.3e-38 | 51.27 | hypothetical protein Csa_011503 [Cucumis sativus] | [more] |
KAG6577377.1 | 7.4e-38 | 43.99 | hypothetical protein SDJN03_24951, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0060661.1 | 1.3e-34 | 50.68 | hypothetical protein E6C27_scaffold22G005540 [Cucumis melo var. makuwa] >TYK0221... | [more] |
XP_023551824.1 | 7.9e-32 | 49.46 | fibroin heavy chain-like isoform X2 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1EU53 | 2.2e-40 | 48.40 | fibroin heavy chain-like OS=Cucurbita moschata OX=3662 GN=LOC111435943 PE=4 SV=1 | [more] |
A0A0A0L7X7 | 1.6e-38 | 51.27 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104850 PE=4 SV=1 | [more] |
A0A5A7V4J6 | 6.3e-35 | 50.68 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6I8PB04 | 6.6e-08 | 50.41 | Bassoon presynaptic cytomatrix protein OS=Ornithorhynchus anatinus OX=9258 GN=BS... | [more] |
U3KJI4 | 8.6e-08 | 53.57 | Uncharacterized protein OS=Ficedula albicollis OX=59894 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |