Lag0018800 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018800
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function (DUF1218)
Location	chr5: 34699483 .. 34701429 (+)
RNA-Seq Expression	Lag0018800
Synteny	Lag0018800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACAAAGCTACTACTTTTCACAGTCTTTCTCTTTGATGTCATTGCTTTTGGCTTGGCCATTGCAGCCGAGCAAAGGAGAAGCATTGTAAGCTCATGCCCTTTTCCTCTTTCTGTTTCTCTCTTTTCTATTTCTTTTCATTGTTGCATGTTTTAGTGAAAAGCTGTGCCTTTACTTCAGAATCTTGGTGATTTGTGAGCTTTCTCCTCTGGGTTTGCTTAGTTCTTTTGGTTCTGAATATGGGTTCTTTCAGCTTTAGAGTGAGAATAAAAGGCTTGAATCTTTCCCTTCAAAACAATGGTTTTTTAGGTTAAAGAGATTTAGAAAGAACTTCCCCTCTAGTTTTCTCAGTGACCAAACTAAGGAAAGCCTTTTGTTTCAGCTGGAAAAGAACTCAGATCTACTTTCATTGGTTTTCTTAAACCCTAATTCGTGCTGTTCTTGGGGAAATTTCTTGTGAATGATAAAAAAAAAATCCATTTTGTACCATGTCTTTGGAATTACTTAGTTCAGGGCTGCCCAATGAGCAAAAGATGATGTCTCCACTAAGAGAAATTTCTTGTGAATAGTCATTTTGTATCATATCTTTGGGATTTAGGACTTCCTAATGAGCAAAATTTGATTTCTTCACTGGAAGTGTCCTGTTATTGGGATTTAATGTGTAAGATAGATGGGGGAGGTGGTGATACACCATACCATAACAAATCTTGAATTACTACTCTTTCGTGTAAGGATGCCTAATCGTCGCACCGATACTATTTGGGGCGGAGAAATGGATCCCACAAACCTTCTTTAAAGAGGGATCTGCAAATCTTGAAAGACTACTCTTTTCGTCTAAGGATGCTTAATCGCCGCACCGATATTATTCGAGGCTGAGGTTGATTGAGATTGCTCTATTTCTTTGAGGAGAGATCTATGGATCTCAAAGGACAATCTTTCGTCTAAGGATGAAATCTTCTTCAAAGACAGATCTGATACTCTTAGGCCCCACATTGTTTGTTTTTGACTCACAAATCATTGTTTTTCCCCTTACTTTCTTTACCTGCTCCCAATAAGAACAACCAAACTCATAATTCAGTGGGGGGGGGGGGGGGGGGGGACTGTTTGAAAGTCAAAGAAGATATTTATCTCTAAAACCTTAGGACATTCCAAAGGATTCATAATTATTCTTTAACATTATGTTGCCCAATATTGAATTGAGATGAGTATTTTAATTCCTTACAGATATTTTTAACTTTGAATCTCAACAAGTTTTTCTCTGGGTTTGAATCAACATCAGCATTTTGTCATCGTATTCCTCGACGTTTTTGTAATTCCTACCTGCATTTTCATTGTGGACTAATAAGCATGATTTGAAATCGATTCACAGGCAAAGATAGTTGAAGACACAGATGCCAAAAGAAACTATTGTGTCTATGACTCAGACATTTCAACTGGATTAGGAGTTGGAGCATTTCTCTTCCTGATGGCTAGCCAGATCCTCATAATGGTGGCTAGCCGCTGCTTCTGCTGCGGTAAGCCTCTAAGTCCGGGCGGTTCGAGGGCTTGGGCTGTCATTCTTTTCATAACCTGCTGGTAAGTAGAGCTAACTAAAGTGTTATTTGACATCAATTTCTTGTACCAAGAAAGGGTGATTTTTCGTACTGGTATGATATTGTCTATTGTTGCAAAATAATCTATTTCAGGGCGTTTTTCTTCATCGCCGAGATTTGCCTGCTGGCGGGTTCGGCGAGGAATGCATACCACACCAAGTACAGAACAATGCTTACTGAAACTCCTCCCTCTTGTCAAATGTTGAGAAGAGGAGTGTTTGCTGCAGGAGCAGCTTTCGTTTTCTTCACTTCCATTGTTTCTCAGTTCTACTACGTTTGCTACTCGAGGGCGCGGGAGAACTTCCAATCGTATAACAAAGACACCGGCATTGGCATGAGTACCTACAAATGA

mRNA sequence

ATGGCGACAAAGCTACTACTTTTCACAGTCTTTCTCTTTGATGTCATTGCTTTTGGCTTGGCCATTGCAGCCGAGCAAAGGAGAAGCATTGCAAAGATAGTTGAAGACACAGATGCCAAAAGAAACTATTGTGTCTATGACTCAGACATTTCAACTGGATTAGGAGTTGGAGCATTTCTCTTCCTGATGGCTAGCCAGATCCTCATAATGGTGGCTAGCCGCTGCTTCTGCTGCGGTAAGCCTCTAAGTCCGGGCGGTTCGAGGGCTTGGGCTGTCATTCTTTTCATAACCTGCTGGGCGTTTTTCTTCATCGCCGAGATTTGCCTGCTGGCGGGTTCGGCGAGGAATGCATACCACACCAAGTACAGAACAATGCTTACTGAAACTCCTCCCTCTTGTCAAATGTTGAGAAGAGGAGTGTTTGCTGCAGGAGCAGCTTTCGTTTTCTTCACTTCCATTGTTTCTCAGTTCTACTACGTTTGCTACTCGAGGGCGCGGGAGAACTTCCAATCGTATAACAAAGACACCGGCATTGGCATGAGTACCTACAAATGA

Coding sequence (CDS)

ATGGCGACAAAGCTACTACTTTTCACAGTCTTTCTCTTTGATGTCATTGCTTTTGGCTTGGCCATTGCAGCCGAGCAAAGGAGAAGCATTGCAAAGATAGTTGAAGACACAGATGCCAAAAGAAACTATTGTGTCTATGACTCAGACATTTCAACTGGATTAGGAGTTGGAGCATTTCTCTTCCTGATGGCTAGCCAGATCCTCATAATGGTGGCTAGCCGCTGCTTCTGCTGCGGTAAGCCTCTAAGTCCGGGCGGTTCGAGGGCTTGGGCTGTCATTCTTTTCATAACCTGCTGGGCGTTTTTCTTCATCGCCGAGATTTGCCTGCTGGCGGGTTCGGCGAGGAATGCATACCACACCAAGTACAGAACAATGCTTACTGAAACTCCTCCCTCTTGTCAAATGTTGAGAAGAGGAGTGTTTGCTGCAGGAGCAGCTTTCGTTTTCTTCACTTCCATTGTTTCTCAGTTCTACTACGTTTGCTACTCGAGGGCGCGGGAGAACTTCCAATCGTATAACAAAGACACCGGCATTGGCATGAGTACCTACAAATGA

Protein sequence

MATKLLLFTVFLFDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFLFLMASQILIMVASRCFCCGKPLSPGGSRAWAVILFITCWAFFFIAEICLLAGSARNAYHTKYRTMLTETPPSCQMLRRGVFAAGAAFVFFTSIVSQFYYVCYSRARENFQSYNKDTGIGMSTYK

Homology

[Close]

BLAST of Lag0018800 vs. NCBI nr
Match: XP_038903364.1 (uncharacterized protein LOC120089980 [Benincasa hispida])

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-95
Identity = 176/184 (95.65%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MATKLLLFTVFLFDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL 60
           MA+KLLLFTVF+FDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL
Sbjct: 1   MASKLLLFTVFVFDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPGGSRAWAVILFITCWAFFFIAEICLLAGSARNAYHT 120
           FLMASQILIMVASRCFCCGKPLSPGGSRAWAV+LFITCW FFFIAEICLLAGSARNAYHT
Sbjct: 61  FLMASQILIMVASRCFCCGKPLSPGGSRAWAVVLFITCWVFFFIAEICLLAGSARNAYHT 120

Query: 121 KYRTMLTETPPSCQMLRRGVFAAGAAFVFFTSIVSQFYYVCYSRARENFQSYNKDTGIGM 180
           KYRT+LT+TPPSCQMLRRGVFAAGAAF+FFTSIVSQFYYVCYSRARE+FQSYNKDTGIGM
Sbjct: 121 KYRTLLTDTPPSCQMLRRGVFAAGAAFIFFTSIVSQFYYVCYSRARESFQSYNKDTGIGM 180

Query: 181 STYK 185
           STYK
Sbjct: 181 STYK 184

[Close]

BLAST of Lag0018800 vs. NCBI nr
Match: XP_008452269.1 (PREDICTED: uncharacterized protein 2C05 isoform X1 [Cucumis melo] >KAA0060671.1 uncharacterized protein E6C27_scaffold22G005660 [Cucumis melo var. makuwa] >TYK23801.1 uncharacterized protein E5676_scaffold580G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 350.9 bits (899), Expect = 6.7e-93
Identity = 171/184 (92.93%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MATKLLLFTVFLFDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL 60
           MA+KLLLFTVF+FDVIAFGLAIAAEQRRSIAKIVEDT AKRNYCVYDSDISTGLGVGAFL
Sbjct: 1   MASKLLLFTVFVFDVIAFGLAIAAEQRRSIAKIVEDTGAKRNYCVYDSDISTGLGVGAFL 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPGGSRAWAVILFITCWAFFFIAEICLLAGSARNAYHT 120
           FL+ASQILIMVASRCFCCGKPLSPGGSRAWAV+LFITCW FF IAEICLLAGSARNAYHT
Sbjct: 61  FLLASQILIMVASRCFCCGKPLSPGGSRAWAVVLFITCWVFFLIAEICLLAGSARNAYHT 120

Query: 121 KYRTMLTETPPSCQMLRRGVFAAGAAFVFFTSIVSQFYYVCYSRARENFQSYNKDTGIGM 180
           KYRT+LT+TPPSCQMLRRGVFAAGAAF+FFTSIVSQFYYVCYSRARE+FQSY+KDTG+GM
Sbjct: 121 KYRTLLTDTPPSCQMLRRGVFAAGAAFIFFTSIVSQFYYVCYSRARESFQSYSKDTGVGM 180

Query: 181 STYK 185
           STYK
Sbjct: 181 STYK 184

[Close]

BLAST of Lag0018800 vs. NCBI nr
Match: XP_022142726.1 (uncharacterized protein LOC111012773 [Momordica charantia])

HSP 1 Score: 348.2 bits (892), Expect = 4.3e-92
Identity = 172/184 (93.48%), Postives = 178/184 (96.74%), Query Frame = 0


Query: 1   MATKLLLFTVFLFDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL 60
           MA+KLLLFTVF+FDVIAFGLAIAAEQRRSIAKIV+DTDAKRNYCVYDSDISTGLGVG FL
Sbjct: 1   MASKLLLFTVFVFDVIAFGLAIAAEQRRSIAKIVQDTDAKRNYCVYDSDISTGLGVGGFL 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPGGSRAWAVILFITCWAFFFIAEICLLAGSARNAYHT 120
           FLMASQILIMVASRCFCCG+PLSPGGSRA AVILFITCW FFFIAEICLLAGS RNAYHT
Sbjct: 61  FLMASQILIMVASRCFCCGRPLSPGGSRALAVILFITCWVFFFIAEICLLAGSVRNAYHT 120

Query: 121 KYRTMLTETPPSCQMLRRGVFAAGAAFVFFTSIVSQFYYVCYSRARENFQSYNKDTGIGM 180
           KYRTM TETPPSCQMLRRGVFAAGAAF+FFTSIVSQFYYVCYSRARE+FQSYNKD GIGM
Sbjct: 121 KYRTMFTETPPSCQMLRRGVFAAGAAFIFFTSIVSQFYYVCYSRARESFQSYNKDAGIGM 180

Query: 181 STYK 185
           STYK
Sbjct: 181 STYK 184

[Close]

BLAST of Lag0018800 vs. NCBI nr
Match: XP_004133701.1 (uncharacterized protein LOC101203051 [Cucumis sativus] >KGN56229.1 hypothetical protein Csa_009616 [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 2.8e-91
Identity = 170/184 (92.39%), Postives = 178/184 (96.74%), Query Frame = 0


Query: 1   MATKLLLFTVFLFDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL 60
           MA+KLLLFTVF+FDVIAFGLAIAAEQRRSIAKIVED  AK NYCVYDSDISTGLGVGAFL
Sbjct: 1   MASKLLLFTVFVFDVIAFGLAIAAEQRRSIAKIVEDPGAKTNYCVYDSDISTGLGVGAFL 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPGGSRAWAVILFITCWAFFFIAEICLLAGSARNAYHT 120
           FL+ASQILIMVASRCFCCGKPLSPGGSRAWAV+L ITCW FF IAEICLLAGSARNAYHT
Sbjct: 61  FLLASQILIMVASRCFCCGKPLSPGGSRAWAVVLLITCWVFFLIAEICLLAGSARNAYHT 120

Query: 121 KYRTMLTETPPSCQMLRRGVFAAGAAFVFFTSIVSQFYYVCYSRARENFQSYNKDTGIGM 180
           KYRT+LTETPPSCQMLRRGVFAAGAAF+FFTSIVSQFYYVCYSRARE+FQSY+KDTGIGM
Sbjct: 121 KYRTLLTETPPSCQMLRRGVFAAGAAFIFFTSIVSQFYYVCYSRARESFQSYSKDTGIGM 180

Query: 181 STYK 185
           STYK
Sbjct: 181 STYK 184

[Close]

BLAST of Lag0018800 vs. NCBI nr
Match: XP_023002999.1 (uncharacterized protein LOC111496714 [Cucurbita maxima] >XP_023540155.1 uncharacterized protein LOC111800609 [Cucurbita pepo subsp. pepo] >KAG6600734.1 hypothetical protein SDJN03_05967, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344.7 bits (883), Expect = 4.8e-91
Identity = 170/184 (92.39%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MATKLLLFTVFLFDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL 60
           MA+KLLLFTVFLFD+IAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL
Sbjct: 1   MASKLLLFTVFLFDIIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFL 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPGGSRAWAVILFITCWAFFFIAEICLLAGSARNAYHT 120
           FLMASQILIM+ASRCFCCGKPLSPGGSRA A++LFI CW FF IAEICLLAGSARNAYHT
Sbjct: 61  FLMASQILIMLASRCFCCGKPLSPGGSRACALLLFIACWVFFLIAEICLLAGSARNAYHT 120

Query: 121 KYRTMLTETPPSCQMLRRGVFAAGAAFVFFTSIVSQFYYVCYSRARENFQSYNKDTGIGM 180
           KYRT+LT+TPPSCQMLRRGVFAAGAAF FFTSIVSQFYYVCYSRARENFQSYNKD  IGM
Sbjct: 121 KYRTLLTDTPPSCQMLRRGVFAAGAAFTFFTSIVSQFYYVCYSRARENFQSYNKDANIGM 180

Query: 181 STYK 185
           STYK
Sbjct: 181 STYK 184

The following BLAST results are available for this feature:

BLAST of Lag0018800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903364.1	1.9e-95	95.65	uncharacterized protein LOC120089980 [Benincasa hispida]	[more]
XP_008452269.1	6.7e-93	92.93	PREDICTED: uncharacterized protein 2C05 isoform X1 [Cucumis melo] >KAA0060671.1 ...	[more]
XP_022142726.1	4.3e-92	93.48	uncharacterized protein LOC111012773 [Momordica charantia]	[more]
XP_004133701.1	2.8e-91	92.39	uncharacterized protein LOC101203051 [Cucumis sativus] >KGN56229.1 hypothetical ...	[more]
XP_023002999.1	4.8e-91	92.39	uncharacterized protein LOC111496714 [Cucurbita maxima] >XP_023540155.1 uncharac...	[more]

BLAST of Lag0018800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Modifying wall lignin-1/2	PFAM	PF06749	DUF1218	coord: 58..152 e-value: 2.8E-28 score: 98.2
None	No IPR available	PANTHER	PTHR31769:SF56	SUBFAMILY NOT NAMED	coord: 1..184
None	No IPR available	PANTHER	PTHR31769	OS07G0462200 PROTEIN-RELATED	coord: 1..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018800.1	Lag0018800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane