Lag0018780 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018780
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ABC transporter family protein
Location	chr5: 34263278 .. 34263872 (+)
RNA-Seq Expression	Lag0018780
Synteny	Lag0018780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGTTGCTTAATGGAATCTCCGGAGAGGCGAGGGAAGGGGAAATTATGGCGGTGCTTGGCGCTAGTGGGTCGACGCTGATTGACGCTCTCGCCGATCGGATTGCAAAAGCCTTTGAGATGGTGAATCGCAAAGGTTGGTATTGGTGTATTTGTGTATTTGTTTGAAGAGGAGGGATGTGTATTTGTGTATAAGTGCTATGCTCGAGCGATCTGGGTCTTGTCTGATTGGAGTTTTGTTGGTGGGTTTTTGGTTTTTTTTATTTTTTTATTTTAGTTTGTTTTTGTCATTTTTTGTTGATCTGAAGCTATTGTATGATTTTTGGGGTTTTTGTTTTCTTAGGTTTGTCTGCTATTTTGCCCTATTTTGGGTTGTTGTATTGAAAAGGGAGATTTCAATTAAGTATATGGTTTGTTGATCTGAAGCTATTGTATGATTTTTGGGGGTTTTTGTTTTCTAGGGTTTGTGTTGTTGTATTGAAAAGGGAGATTTCAGTTAAGTATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATCTGCAGTTGA

mRNA sequence

ATGAAATTGTTGCTTAATGGAATCTCCGGAGAGGCGAGGGAAGGGGAAATTATGGCGGTGCTTGGCGCTAGTGGGTCGACGCTGATTGACGCTCTCGCCGATCGGATTGCAAAAGCCTTTGAGATGGTGAATCGCAAAGGGAGATTTCAGTTAAGTATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATCTGCAGTTGA

Coding sequence (CDS)

ATGAAATTGTTGCTTAATGGAATCTCCGGAGAGGCGAGGGAAGGGGAAATTATGGCGGTGCTTGGCGCTAGTGGGTCGACGCTGATTGACGCTCTCGCCGATCGGATTGCAAAAGCCTTTGAGATGGTGAATCGCAAAGGGAGATTTCAGTTAAGTATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATCTGCAGTTGA

Protein sequence

MKLLLNGISGEAREGEIMAVLGASGSTLIDALADRIAKAFEMVNRKGRFQLSMEEEEEEEEEEEEEEEEEEEEEEEEEICS

Homology

[Close]

BLAST of Lag0018780 vs. NCBI nr
Match: XP_031737933.1 (ABC transporter G family member 20 isoform X2 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-07
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1   MKLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAKAFEM 43
           +KLLLN ISGEAREGEIMAVLGASG   STLIDALADRIAK F +
Sbjct: 99  VKLLLNDISGEAREGEIMAVLGASGSGKSTLIDALADRIAKEFRL 143

[Close]

BLAST of Lag0018780 vs. NCBI nr
Match: GFP83721.1 (ABC transporter g family member 2 [Phtheirospermum japonicum])

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1  MKLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
          MK+LLNGISGEAREGEIMAVLGASG   STLIDALADRIA+
Sbjct: 1  MKVLLNGISGEAREGEIMAVLGASGSGKSTLIDALADRIAR 41

[Close]

BLAST of Lag0018780 vs. NCBI nr
Match: XP_009341777.1 (PREDICTED: ABC transporter G family member 20-like [Pyrus x bretschneideri])

HSP 1 Score: 63.5 bits (153), Expect = 9.4e-07
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 2   KLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
           K+LLNGISGEAREGEIMAVLGASG   STLIDALADRIAK
Sbjct: 101 KVLLNGISGEAREGEIMAVLGASGSGKSTLIDALADRIAK 140

[Close]

BLAST of Lag0018780 vs. NCBI nr
Match: KAB2630745.1 (ABC transporter G family member 20-like [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 63.5 bits (153), Expect = 9.4e-07
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 2   KLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
           K+LLNGISGEAREGEIMAVLGASG   STLIDALADRIAK
Sbjct: 101 KVLLNGISGEAREGEIMAVLGASGSGKSTLIDALADRIAK 140

[Close]

BLAST of Lag0018780 vs. NCBI nr
Match: TQD83469.1 (hypothetical protein C1H46_030975 [Malus baccata])

HSP 1 Score: 63.5 bits (153), Expect = 9.4e-07
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 2   KLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
           K+LLNGISGEAREGEIMAVLGASG   STLIDALADRIAK
Sbjct: 101 KVLLNGISGEAREGEIMAVLGASGSGKSTLIDALADRIAK 140

[Close]

BLAST of Lag0018780 vs. ExPASy Swiss-Prot
Match: Q9ZUT0 (ABC transporter G family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 2   KLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
           K+LLNGISGEAREGE+MAVLGASG   STLIDALA+RIAK
Sbjct: 131 KILLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIAK 170

[Close]

BLAST of Lag0018780 vs. ExPASy Swiss-Prot
Match: Q9LFG8 (ABC transporter G family member 20 OS=Arabidopsis thaliana OX=3702 GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-08
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 2   KLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
           K+LLNGISGEAREGE+MAVLGASG   STLIDALA+RI+K
Sbjct: 124 KVLLNGISGEAREGEMMAVLGASGSGKSTLIDALANRISK 163

[Close]

BLAST of Lag0018780 vs. ExPASy Swiss-Prot
Match: B8ALI0 (ABC transporter G family member 5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11044 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-08
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MKLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
           M+ LL+GISGEAR+GEIMAVLGASG   STLIDALA+RIAK
Sbjct: 154 MRTLLDGISGEARDGEIMAVLGASGSGKSTLIDALANRIAK 194

[Close]

BLAST of Lag0018780 vs. ExPASy Swiss-Prot
Match: Q8H8V7 (ABC transporter G family member 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RCN1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-08
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MKLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
           M+ LL+GISGEAR+GEIMAVLGASG   STLIDALA+RIAK
Sbjct: 154 MRTLLDGISGEARDGEIMAVLGASGSGKSTLIDALANRIAK 194

[Close]

BLAST of Lag0018780 vs. ExPASy Swiss-Prot
Match: Q9FNB5 (ABC transporter G family member 6 OS=Arabidopsis thaliana OX=3702 GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.8e-08
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 2   KLLLNGISGEAREGEIMAVLGASG---STLIDALADRIAK 39
           K LLNGI+GEAR+GEI+AVLGASG   STLIDALA+RIAK
Sbjct: 106 KTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAK 145

The following BLAST results are available for this feature:

BLAST of Lag0018780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737933.1	4.2e-07	82.22	ABC transporter G family member 20 isoform X2 [Cucumis sativus]	[more]
GFP83721.1	5.5e-07	87.80	ABC transporter g family member 2 [Phtheirospermum japonicum]	[more]
XP_009341777.1	9.4e-07	90.00	PREDICTED: ABC transporter G family member 20-like [Pyrus x bretschneideri]	[more]
KAB2630745.1	9.4e-07	90.00	ABC transporter G family member 20-like [Pyrus ussuriensis x Pyrus communis]	[more]
TQD83469.1	9.4e-07	90.00	hypothetical protein C1H46_030975 [Malus baccata]	[more]

BLAST of Lag0018780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUT0	8.0e-09	85.00	ABC transporter G family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCG2 PE=2 ...	[more]
Q9LFG8	2.3e-08	82.50	ABC transporter G family member 20 OS=Arabidopsis thaliana OX=3702 GN=ABCG20 PE=...	[more]
B8ALI0	4.0e-08	80.49	ABC transporter G family member 5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_...	[more]
Q8H8V7	4.0e-08	80.49	ABC transporter G family member 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RC...	[more]
Q9FNB5	8.8e-08	80.00	ABC transporter G family member 6 OS=Arabidopsis thaliana OX=3702 GN=ABCG6 PE=2 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..81
None	No IPR available	PANTHER	PTHR48041	ABC TRANSPORTER G FAMILY MEMBER 28	coord: 2..38
None	No IPR available	PANTHER	PTHR48041:SF10	ABC TRANSPORTER G FAMILY MEMBER 6	coord: 2..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018780.1	Lag0018780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding