Lag0018748 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018748
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein Ycf2-like
Locationchr5: 33812318 .. 33813175 (+)
RNA-Seq ExpressionLag0018748
SyntenyLag0018748
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATACGAGGTAATCCTCACCCTCAGCGCCCCGCCAACCAACTATACACGGAAGGTACAGAATACAGTTCCACACTTGATTAACTGGGAATCAGACACACAACCTGAATGGAGGGAACTACATGCCAAATCTTCCAATCCCATCGGTCAGTAACCCATTCCTCATGTATTAAAAATGTATTACTTGTATATACACTTAATGTCACCTATATTATGCAGTTGGAGGTCGTGCTGTTAGAGCCAACAGATGTGGAAATGCGGATGTCGTACTTCCAACCATTCGTAGACGATGAGATGGCATCACGTAGATTGGGCGGTGGCGGGCGACACATGGAGGCGATGATATAATTCCCCCCAACTTTTCTATCGTGACAGCCCCAACAGACCAAAGGCCAGATGTGCATGAACAACGACACAAGGAAATATTGGGGAAACTCGACAAGGTTTATTCGGTGTTAGGAGTGTTGGTTGACGTATTGAGGTAGGTTCATGGAGACGCCGGTCCAAGTGCAAGGACTTCGACCCCCAATACTAATCTAGAGGTATGTGCGCGTAATTACACTATGCTCACCCTTAACCCCCACATCCCCCTTTACTGATTTAATCTCTTGCCCCCCACTGCAGCATGGAAAAAAGAGATGAACAAAAGAAGGATGAGAGTGACAAGAAGGATGAGCAAAAGAAGGGAGACGACCATTTTCAGAAAAAAAACCTCATCCACGTAAAGAGGACGACGACAACGACCCCAATGGGGGCATCATCAGCAGACGGGGGGGGGTCCCTAGTATTACAACAACAATTCCATCATCAGCACATGGAACTGCTGGAAGCGAGGGATGGAGAAAACTGGCGTTGA

mRNA sequence

ATGGCATACGAGGTAATCCTCACCCTCAGCGCCCCGCCAACCAACTATACACGGAAGGTACAGAATACAGTTCCACACTTGATTAACTGGGAATCAGACACACAACCTGAATGGAGGGAACTACATGCCAAATCTTCCAATCCCATCGTTGGAGGTCGTGCTGTTAGAGCCAACAGATGTGGAAATGCGGATGTCGTACTTCCAACCATTCCCCCAACAGACCAAAGGCCAGATGTGCATGAACAACGACACAAGGAAATATTGGGGAAACTCGACAAGGTTTATTCGGTGTTAGGAGTGTTGGTTGACGTATTGAGCATGGAAAAAAGAGATGAACAAAAGAAGGATGAGAGTGACAAGAAGGATGAGCAAAAGAAGGGAGACGACCATTTTCAGAAAAAAAACCTCATCCACGTAAAGAGGACGACGACAACGACCCCAATGGGGGCATCATCAGCAGACGGGGGGGGGTCCCTAGTATTACAACAACAATTCCATCATCAGCACATGGAACTGCTGGAAGCGAGGGATGGAGAAAACTGGCGTTGA

Coding sequence (CDS)

ATGGCATACGAGGTAATCCTCACCCTCAGCGCCCCGCCAACCAACTATACACGGAAGGTACAGAATACAGTTCCACACTTGATTAACTGGGAATCAGACACACAACCTGAATGGAGGGAACTACATGCCAAATCTTCCAATCCCATCGTTGGAGGTCGTGCTGTTAGAGCCAACAGATGTGGAAATGCGGATGTCGTACTTCCAACCATTCCCCCAACAGACCAAAGGCCAGATGTGCATGAACAACGACACAAGGAAATATTGGGGAAACTCGACAAGGTTTATTCGGTGTTAGGAGTGTTGGTTGACGTATTGAGCATGGAAAAAAGAGATGAACAAAAGAAGGATGAGAGTGACAAGAAGGATGAGCAAAAGAAGGGAGACGACCATTTTCAGAAAAAAAACCTCATCCACGTAAAGAGGACGACGACAACGACCCCAATGGGGGCATCATCAGCAGACGGGGGGGGGTCCCTAGTATTACAACAACAATTCCATCATCAGCACATGGAACTGCTGGAAGCGAGGGATGGAGAAAACTGGCGTTGA

Protein sequence

MAYEVILTLSAPPTNYTRKVQNTVPHLINWESDTQPEWRELHAKSSNPIVGGRAVRANRCGNADVVLPTIPPTDQRPDVHEQRHKEILGKLDKVYSVLGVLVDVLSMEKRDEQKKDESDKKDEQKKGDDHFQKKNLIHVKRTTTTTPMGASSADGGGSLVLQQQFHHQHMELLEARDGENWR
Homology
[Close]
BLAST of Lag0018748 vs. NCBI nr
Match: KAA0033753.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK06532.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 8.8e-05
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 2   AYEVILTLSAPPTNYTRKVQNTVPHLINWESDTQPEWRELHAK 45
           AYEVI TLS PP  +  K+ N VP +INW +DTQP+W++L  K
Sbjct: 112 AYEVIPTLSTPPNLFATKISNEVPRIINWVADTQPKWKDLKQK 154

[Close]
BLAST of Lag0018748 vs. NCBI nr
Match: KAA0035754.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 2   AYEVILTLSAPPTNYTRKVQNTVPHLINWESDTQPEWRELHAK 45
           AYEVI TLS PP  +  ++ N VP +INW +DTQP+W++L  K
Sbjct: 154 AYEVIPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQK 196

[Close]
BLAST of Lag0018748 vs. NCBI nr
Match: TYK09852.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 2   AYEVILTLSAPPTNYTRKVQNTVPHLINWESDTQPEWRELHAK 45
           AYEVI TLS PP  +  ++ N VP +INW +DTQP+W++L  K
Sbjct: 161 AYEVIPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQK 203

[Close]
BLAST of Lag0018748 vs. NCBI nr
Match: TYK23192.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 2   AYEVILTLSAPPTNYTRKVQNTVPHLINWESDTQPEWRELHAK 45
           AYEVI TLS PP  +  ++ N VP +INW +DTQP+W++L  K
Sbjct: 154 AYEVIPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQK 196

[Close]
BLAST of Lag0018748 vs. NCBI nr
Match: KAA0050200.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 2   AYEVILTLSAPPTNYTRKVQNTVPHLINWESDTQPEWRELHAK 45
           AYEVI TLS PP  +  ++ N VP +INW +DTQP+W++L  K
Sbjct: 261 AYEVIPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQK 303

The following BLAST results are available for this feature:
BLAST of Lag0018748 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033753.18.8e-0555.81protein Ycf2-like [Cucumis melo var. makuwa] >TYK06532.1 protein Ycf2-like [Cucu... [more]
KAA0035754.11.5e-0453.49protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK09852.11.5e-0453.49protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK23192.11.5e-0453.49protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0050200.11.5e-0453.49protein Ycf2-like [Cucumis melo var. makuwa][more]
BLAST of Lag0018748 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018748.1Lag0018748.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane