Lag0018715 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018715
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSWIM-type domain-containing protein
Locationchr5: 33139345 .. 33140649 (+)
RNA-Seq ExpressionLag0018715
SyntenyLag0018715
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATAGTTGCCTTAGCTTTAGTAAATGCAAATACATCCATTGATGTATTTGTTGAGCATGTAGTGCATGAAGATGTAAACATGAGAGATGTCTATTATGAAGAAGCAGGAGTGGAGCATGAAAGTGAAAATGACCAAATATCTGATAAAGAAGATAGCGTAGAAGATATATCATTTTCTGGTAGTGAGGAGGATTTAAATGATGATCTAGAACATAAGATAGTCGAGGATTTTGAAGAGGAAGATAGGGAAGAACATAAATTTGGTTGGGAGAACATAAATTTGAAGTAAGGAGGGGTAGCAACGCATACATAGTAGACTTGAAAGGTAGATGTTGTGCTTGCAGGAAATGGGAGTTGGCTGGAATCCCATGTCAACATGCTATCAGTTCAATCTTTTACAAGTATGATATAGTTGAAAATTATGTTGATGATTGTTATTCAACATCTATCTATGAAGCATGTTATGCTCCCATGATTCATCCTATTAATGGCGAGAATTTATGGAACCATGCGAACGATGACCTAAACCCAATTCGCCCTCCACCAATGAGGAAACAACCTGGGAGGCCCAAAAAGTTAAGACGAAGAGAGCCTGATGAACCACGACCATCTACCAAGTTTAGTAGGAAGCATATTGTTCTCACATGCTCAATTTGCCATAAAGTTGGACATAACAAAAGAGGTTGTAAGGGGAAGGTTAGTAAAAAGAGTGTTTTCTTTTCTTTTTTTTTTTCAATTATTGTGTGTTGCTTGTTGGTGATCTAACTTAACTTTTAATTATGTTTTAATTTGATAGGAAACCATCTCGGTGCAAAGTAGTGGAGTACGATGTTCCCAACAATCGGTTGGTATTTTGCATTTTAAAATATTTGTGCACTTACCTACTTTTAATAATGATCTAATGTTTGTGGGTGGTACCATACCAAAGTGGACGAGTGCAAGCAACTCTGAGAAGTGGACATGAAAAAAGAGCTTGTAAGGGAAAGGTTAGACTTCTTTTTCAATTCAAATTCTTCTCATGAGTTTCAATATGATGTTTTTTCATTGCTTGAGCACAATTCAATTTAGTACTTCTTCAATATGGCAAGGAACAAATTGCAATCTTCCACCACAAGTTTCAGTTTTACCTTCAACTAATGTTGCATCGACTAACACTCGACAAGTGGACAAACTACCAATAAGAGGAAAGTTGAAGAAGAAAGTTAGTAGTGTTCCACTGCTACCAATTTGGGATAATAATAGAATTACACATCCGATTCACTCTGATCCACATGGAGCAGAGCATACATCCAAGGAATGA

mRNA sequence

ATGAATATAGTTGCCTTAGCTTTAGTAAATGCAAATACATCCATTGATGTATTTGTTGAGCATGTAGTGCATGAAGATGTAAACATGAGAGATGTCTATTATGAAGAAGCAGGAGTGGAGCATGAAAGTGAAAATGACCAAATATCTGATAAAGAAGATAGCGTAGAAGATATATCATTTTCTGGTAGTGAGGAGGATTTAAATGATGATCTAGAACATAAGATAGTCGAGGATTTTGAAGAGGAAGATAGGGAAGAACATAAATTTGGTTGGGAGAACATAAATTTGAAGAAATGGGAGTTGGCTGGAATCCCATGTCAACATGCTATCAGTTCAATCTTTTACAAGTATGATATAGTTGAAAATTATGTTGATGATTGTTATTCAACATCTATCTATGAAGCATGTTATGCTCCCATGATTCATCCTATTAATGGCGAGAATTTATGGAACCATGCGAACGATGACCTAAACCCAATTCGCCCTCCACCAATGAGGAAACAACCTGGGAGGCCCAAAAAGTTAAGACGAAGAGAGCCTGATGAACCACGACCATCTACCAAGAAACCATCTCGGTGCAAAGTAGTGGAGTACGATGTTCCCAACAATCGTACTTCTTCAATATGGCAAGGAACAAATTGCAATCTTCCACCACAAGTTTCAGTTTTACCTTCAACTAATGTTGCATCGACTAACACTCGACAAGTGGACAAACTACCAATAAGAGGAAAGTTGAAGAAGAAAGTTAGTAGTGTTCCACTGCTACCAATTTGGGATAATAATAGAATTACACATCCGATTCACTCTGATCCACATGGAGCAGAGCATACATCCAAGGAATGA

Coding sequence (CDS)

ATGAATATAGTTGCCTTAGCTTTAGTAAATGCAAATACATCCATTGATGTATTTGTTGAGCATGTAGTGCATGAAGATGTAAACATGAGAGATGTCTATTATGAAGAAGCAGGAGTGGAGCATGAAAGTGAAAATGACCAAATATCTGATAAAGAAGATAGCGTAGAAGATATATCATTTTCTGGTAGTGAGGAGGATTTAAATGATGATCTAGAACATAAGATAGTCGAGGATTTTGAAGAGGAAGATAGGGAAGAACATAAATTTGGTTGGGAGAACATAAATTTGAAGAAATGGGAGTTGGCTGGAATCCCATGTCAACATGCTATCAGTTCAATCTTTTACAAGTATGATATAGTTGAAAATTATGTTGATGATTGTTATTCAACATCTATCTATGAAGCATGTTATGCTCCCATGATTCATCCTATTAATGGCGAGAATTTATGGAACCATGCGAACGATGACCTAAACCCAATTCGCCCTCCACCAATGAGGAAACAACCTGGGAGGCCCAAAAAGTTAAGACGAAGAGAGCCTGATGAACCACGACCATCTACCAAGAAACCATCTCGGTGCAAAGTAGTGGAGTACGATGTTCCCAACAATCGTACTTCTTCAATATGGCAAGGAACAAATTGCAATCTTCCACCACAAGTTTCAGTTTTACCTTCAACTAATGTTGCATCGACTAACACTCGACAAGTGGACAAACTACCAATAAGAGGAAAGTTGAAGAAGAAAGTTAGTAGTGTTCCACTGCTACCAATTTGGGATAATAATAGAATTACACATCCGATTCACTCTGATCCACATGGAGCAGAGCATACATCCAAGGAATGA

Protein sequence

MNIVALALVNANTSIDVFVEHVVHEDVNMRDVYYEEAGVEHESENDQISDKEDSVEDISFSGSEEDLNDDLEHKIVEDFEEEDREEHKFGWENINLKKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIHPINGENLWNHANDDLNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKKPSRCKVVEYDVPNNRTSSIWQGTNCNLPPQVSVLPSTNVASTNTRQVDKLPIRGKLKKKVSSVPLLPIWDNNRITHPIHSDPHGAEHTSKE
Homology
BLAST of Lag0018715 vs. NCBI nr
Match: XP_023896782.1 (uncharacterized protein LOC112008678 [Quercus suber])

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-20
Identity = 60/138 (43.48%), Postives = 79/138 (57.25%), Query Frame = 0

Query: 97   KKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIHPINGENLWNHANDD 156
            +KW++ GIPC HAIS IF+  +  E Y +DCY  S Y+ACY P+I PING+N+W      
Sbjct: 892  RKWDITGIPCCHAISCIFFNREAAEKYTNDCYKVSTYKACYEPIIDPINGQNMWTPTG-- 951

Query: 157  LNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKK----PSRCKVVEYDVPNNRTSSIWQGT 216
            L P++PP  R+ PGRPKK R REP+EPR    K      RCK       N R+     G 
Sbjct: 952  LPPVQPPIKRRPPGRPKKKRAREPNEPRRGHSKGLGIAKRCKSCGKIGHNKRSCKGEVGG 1011

Query: 217  NCNLPPQVSVLPSTNVAS 231
            N +LP      P++  +S
Sbjct: 1012 NSSLPTAAGGGPNSRSSS 1027

BLAST of Lag0018715 vs. NCBI nr
Match: XP_023875200.1 (uncharacterized protein LOC111987710 [Quercus suber])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-19
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 0

Query: 97  KKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIHPINGENLWNHANDD 156
           KKW+++GIPC HAI+ IF+     E YV  CY  S Y+ACY P+I PING+N+W   + D
Sbjct: 479 KKWDISGIPCAHAITCIFFNRQDAEQYVHPCYHVSTYKACYEPIIAPINGQNMWR--SSD 538

Query: 157 LNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKKPSRCKVVEYDVPNNRTSSIWQGTNCNL 216
           + P++PP  R+ PGRPKK R +EP+EP        +CK       N R+     G N +L
Sbjct: 539 VTPVQPPIKRRLPGRPKKKRAKEPNEPTRRAGISKQCKTYGKLGHNKRSCKGEIGGNSSL 597

Query: 217 P 218
           P
Sbjct: 599 P 597

BLAST of Lag0018715 vs. NCBI nr
Match: XP_023905004.1 (uncharacterized protein LOC112016740, partial [Quercus suber])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-19
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 0

Query: 97  KKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIHPINGENLWNHANDD 156
           +KWE++GIPC HAIS IF+     E YV  CY  S Y+ACY P+I PING+N+W   + D
Sbjct: 337 RKWEISGIPCAHAISCIFFNRQDAEQYVHPCYHVSTYKACYEPIIAPINGQNMWR--SSD 396

Query: 157 LNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKKPSRCKVVEYDVPNNRTSSIWQGTNCNL 216
           + P++PP  R+ PGRPKK R +EP+EP        +CK       N R+     G N +L
Sbjct: 397 VAPVQPPIKRRPPGRPKKKRAKEPNEPTRRGGISKQCKTCGKLGHNKRSCKGEIGGNSSL 455

Query: 217 P 218
           P
Sbjct: 457 P 455

BLAST of Lag0018715 vs. NCBI nr
Match: XP_030936973.1 (uncharacterized protein LOC115962214 [Quercus lobata])

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-19
Identity = 67/161 (41.61%), Postives = 88/161 (54.66%), Query Frame = 0

Query: 83  DREEHKFGWENINLKKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIH 142
           D EE K      + +KW++ GIPC HAIS IF+  +  E YV+ CY  + Y  CY P+I 
Sbjct: 86  DLEEKK-----CSCRKWDIVGIPCCHAISCIFFNREDAEKYVNACYKRTTYIDCYEPIIE 145

Query: 143 PINGENLWNHANDDLNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKK-----PSRCKVVE 202
           PING+N+W    + L P++PP  R+ PGRPKK R  EPDEPR   KK       +CK+ E
Sbjct: 146 PINGQNMW--GPNGLPPVQPPIKRRPPGRPKKKRALEPDEPRSHRKKRGLGISKQCKLCE 205

Query: 203 YDVPNNRTSSIWQGTNCNLPPQVSVLPSTNVASTNTRQVDK 239
               N R+     G N +LP       S + AS  TR+  K
Sbjct: 206 KLGHNKRSCKGEVGGNSSLP------GSASQASRTTRRAAK 233

BLAST of Lag0018715 vs. NCBI nr
Match: XP_030936410.1 (uncharacterized protein LOC115961597 [Quercus lobata])

HSP 1 Score: 105.9 bits (263), Expect = 5.7e-19
Identity = 63/158 (39.87%), Postives = 84/158 (53.16%), Query Frame = 0

Query: 83  DREEHKFGWENINLKKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIH 142
           D EE K      + +KW++ GIPC HAIS IF+  +  E YV+ CY  + Y  CY P+I 
Sbjct: 542 DLEEKK-----CSCRKWDIVGIPCCHAISCIFFNREDAEKYVNACYKRTTYIDCYEPIIE 601

Query: 143 PINGENLWNHANDDLNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKK-----PSRCKVVE 202
           PING+N+W  +   L P++PP  R+ PGRPKK R  EPDEPR   KK       +CK+  
Sbjct: 602 PINGQNIWGPSG--LPPVQPPIKRRPPGRPKKKRALEPDEPRSHRKKRGLGISKQCKLCG 661

Query: 203 YDVPNNRTSSIWQGTNCNLPPQVSVLPSTNVASTNTRQ 236
               N R+     G N +LP   S +  T   +    Q
Sbjct: 662 KLGHNKRSCKGEVGGNSSLPGSASQVSRTTTRAAKDAQ 692

BLAST of Lag0018715 vs. ExPASy TrEMBL
Match: A0A2N9EMB4 (SWIM-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7888 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.3e-24
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 0

Query: 92  ENINLKKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIHPINGENLWN 151
           +N   K+W+L+G+PC HAIS IFY+ +  E+YVD CY  S Y ACY P++ PING ++W 
Sbjct: 638 KNCTCKRWDLSGVPCCHAISCIFYQREAAEDYVDQCYKISTYVACYDPIVMPINGPDMWE 697

Query: 152 HANDDLNPIRPPPMRKQPGRPKKLRRREPDEPRP-STKKPSRCKVVEYDVPNNRT 206
                L P+ PP +R+ PGRPKKLRRREPDEPRP S K     KV    +  NRT
Sbjct: 698 ATG--LAPVEPPRIRRPPGRPKKLRRREPDEPRPQSAKLRGHVKVKLVAIKGNRT 750

BLAST of Lag0018715 vs. ExPASy TrEMBL
Match: A0A2N9HUS0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43291 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 92  ENINLKKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIHPINGENLWN 151
           +N   K+W+L+G+PC HAIS IFY+ +  E+YVD CY  S Y ACY P++ PING ++W 
Sbjct: 747 KNCTCKRWDLSGVPCCHAISCIFYQREAAEDYVDQCYKISTYVACYDPIVMPINGPDMWE 806

Query: 152 HANDDLNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKKPS------RCKVVEYDVPNNRT 206
                L P+ PP +R+ PGRPKKLRRREPDEPRP + K S      +CK    +  N RT
Sbjct: 807 ATG--LAPVEPPRIRRPPGRPKKLRRREPDEPRPQSAKLSKRHLVMKCKKCGENGHNRRT 864

BLAST of Lag0018715 vs. ExPASy TrEMBL
Match: A0A2N9FLE9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15984 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 92  ENINLKKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIHPINGENLWN 151
           +N   K+W+L+G+PC HAIS IFY+ +  E+YVD CY  S Y ACY P++ PING ++W 
Sbjct: 774 KNCTCKRWDLSGVPCCHAISCIFYQREAAEDYVDQCYKISTYVACYDPIVMPINGPDMWE 833

Query: 152 HANDDLNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKKPS------RCKVVEYDVPNNRT 206
                L P+ PP +R+ PGRPKKLRRREPDEPRP + K S      +CK    +  N RT
Sbjct: 834 ATG--LAPVEPPRIRRPPGRPKKLRRREPDEPRPQSAKLSKRHLVMKCKKCGENGHNRRT 891

BLAST of Lag0018715 vs. ExPASy TrEMBL
Match: A0A2N9EQ17 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4581 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.7e-22
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 0

Query: 84  REEHKFGWENINLKKWELAGIPCQHAISSIFYKYDIVENYVDDCYSTSIYEACYAPMIHP 143
           RE+   G   I   +W+L+G+PC HAIS IF + +  E+YVD CY  S Y ACY P++ P
Sbjct: 574 REKLNSGQLGIKTGRWDLSGVPCCHAISCIFSQREAAEDYVDQCYKISTYVACYDPIVMP 633

Query: 144 INGENLWNHANDDLNPIRPPPMRKQPGRPKKLRRREPDEPRPSTKKPS------RCKVVE 203
           ING ++W      L P+ PP +R+ PGRPKKLRRREPD+PRP + K S      +CK   
Sbjct: 634 INGPDMWEATG--LAPVEPPRIRRPPGRPKKLRRREPDKPRPQSTKLSKRHLVMKCKKCG 693

Query: 204 YDVPNNRT 206
            +  N RT
Sbjct: 694 ENGHNKRT 699

BLAST of Lag0018715 vs. ExPASy TrEMBL
Match: A0A2N9FFQ0 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13895 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-21
Identity = 65/148 (43.92%), Postives = 86/148 (58.11%), Query Frame = 0

Query: 64   EEDLNDDLEHKIVEDFEEEDREEHKFGWENINLKKWELAGIPCQHAISSIFYKYDIVENY 123
            E DL  ++  K+  +       E K G       +W+L+G+PC HAIS IFY+ +  E+Y
Sbjct: 1065 EGDLCPNIRKKLSREKLNSGNWESKTG-------RWDLSGVPCCHAISCIFYQREAAEDY 1124

Query: 124  VDDCYSTSIYEACYAPMIHPINGENLWNHANDDLNPIRPPPMRKQPGRPKKLRRREPDEP 183
            VD CY  S Y ACY P++ PING ++W      L P+ PP +R+ PGRPKKLRRREPDEP
Sbjct: 1125 VDQCYKISTYVACYDPIVMPINGPDMWEATG--LAPVEPPRIRRPPGRPKKLRRREPDEP 1184

Query: 184  RPSTKKPS------RCKVVEYDVPNNRT 206
            RP + K S      +CK    +  N RT
Sbjct: 1185 RPQSAKLSKRHLVMKCKKCGENGHNKRT 1203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023896782.11.0e-2043.48uncharacterized protein LOC112008678 [Quercus suber][more]
XP_023875200.11.5e-1944.63uncharacterized protein LOC111987710 [Quercus suber][more]
XP_023905004.11.5e-1945.45uncharacterized protein LOC112016740, partial [Quercus suber][more]
XP_030936973.12.0e-1941.61uncharacterized protein LOC115962214 [Quercus lobata][more]
XP_030936410.15.7e-1939.87uncharacterized protein LOC115961597 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9EMB48.3e-2452.17SWIM-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7888... [more]
A0A2N9HUS01.1e-2350.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43291 PE=4 SV=1[more]
A0A2N9FLE91.1e-2350.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15984 PE=4 SV=1[more]
A0A2N9EQ177.7e-2246.88CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4581... [more]
A0A2N9FFQ06.6e-2143.92CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1389... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..192
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..192

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018715.1Lag0018715.1mRNA