Lag0018690 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018690
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 32582215 .. 32583942 (+)
RNA-Seq Expression	Lag0018690
Synteny	Lag0018690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTTTCTTCTCTTACTTTCCTGCTTTCCGCCCGTTTTATGACTTAAGGATCAGAGGTGATATGGCCTACACCACACCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCATATCTTCCCCAGTTTCTACAAATTCACCGTTGATGTCACGTGAAGGTCAGGTGAGTCCCTTGGCCAAATTTTGGCATCAAGAGTTGGAGCCGTCTGTGGGGAAGAGTGCTGGCCAGTTCAGTCCGTGCATCGGTGGTGGTCTACAAGAGGGATCGGGTTCAGAAACCAGAAAGAAACCTCGGGTATGAGCGGAAAGCGTCGAACCAGATTGGTGTTGAACCGGACTGGGGTTCAAAACTAGAAAGAAACCTTGGAGATGGTTGTAAGGTTCCGTGTGCCCACGATGCTGTGGACCTAACCCAAGAGGACAACCAGCAGAAGAACTGGAGTCTGTGCCACTAACGTCTGAGGAAATGCTAAGGTCTAAGCAGAATGAGAGAGAGAGCCGAGAAGTTTCTGTATCCGACAAGCATCGAGAAGTCAGAGGAAAAGGACGCCGGGTAGAAGATGGAGGCCAGATCCAACATGAGCACTCCTCGGCCGATGATCGAGGCCGAGTAGAAGCCCAATTGCAAAAAGACCCGCAGAAGTTCGCCGCTAAAGACAGCGTCAGGTACGTACACAGGGAATAATGACAGGGAAAAGTCAAAGGCTCGGGCAAAGTCCGAGGCCGAGCAGGCCAAAAGGGGCGAGAGCCATCCAAATGGCTAAAAGACGAATCGACGAGGTGCCCAGCCTTCGCGCTAACACCCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCACAGAAGTCAATGGTTCGTTTAAAGAATTGGCCCGAGCGTTTGTTACGCAATTCCTCGGGGCCCGAAGCCGACAGAAGCCTCAGATCAATTTGCTAACAGTAAAACAGGGGCCCCGAGAAAGCTTGAAGGATTATATTAACAGATTTAGTAACGAAGTTTTGCAGGTAGAAGGCTATGACGATGGATTTGCCTTGATTGCTGTGATTTCAGGTCTGCAGGATGAAAGACTGCTCAACTCGACCGGTGAGAGACAACCACGAACATACGCAGAATTCATGACCCGAGCACAAAGGTACATAAGCGCCGAGGAACTGCTAAGGTCCAAACAAGAAGAGAAAGTGGCCAAAGCCGACAAGAGAAGTCCTCGGCCAATGGCAGAGGCCGACCAGAGACCAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGGTTTGACAGGTGTACACCACTACCAACTCCACTTGAACAGGCCATAGCCACAATACAGGGTACAAACCTAATGAAGTGCCCAGAAAAATTGAGGTCGGACCCAGACAGGAGGAATCAGAACAAGTACTGCACGTTCCACTAAGACCACGGTCACACAACCCGGATAGAAGCCCTAATCCGAGAGGGTTACCTCAAGGAGTTTGTGGGGAATGACAGAAGCTAGAGACAATTACTAGCAGGTCAAGGTAAAGGCGGTTTCAACCCATCGCTCGAATTACGTACAATTTTAGGAGGACTATCCGGTGGAGAGTCAGACAGAAAGCGAAAGGTCGCGATTCGAGAGGCACAACGAGAGCCTGAAGGGCAAGAAGTTTACAGCTGCTTGAAGAAAGGCCCGGGAACTCCTAAGTCTCCCCAGGCTATTCCCAGGAGAGTGTACGCACCCCTGGGATGA

mRNA sequence

ATGATCCCTTTCTTCTCTTACTTTCCTGCTTTCCGCCCGTTTTATGACTTAAGGATCAGAGGTGATATGGCCTACACCACACCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCAGGTGAGTCCCTTGGCCAAATTTTGGCATCAAGAGTTGGAGCCGTCTGTGGGGAAGAGTGCTGGCCAGTTCAGTCCGTGCATCGGTGGTGGTCTACAAGAGGGATCGGGTTCAGAAACCAGAAAGAAACCTCGGGTTCCGTGTGCCCACGATGCTGTGGACCTAACCCAAGAGGACAACCAGCAGAAGAACTGGAGTCTGTGCCACTAACGTCTGAGGAAATGCTAAGGTCTAAGCAGAATGAGAGAGAGAGCCGAGAAGTTTCTGTATCCGACAAGCATCGAGAAGTCAGAGGAAAAGGACGCCGGGTAGAAGATGGAGGCCAGATCCAACATGAGCACTCCTCGGCCGATGATCGAGGCCGAGTAGAAGCCCAATTGCAAAAAGACCCGCAGAAGTTCGCCGCTAAAGACAGCGTCAGATTTAGTAACGAAGTTTTGCAGGTAGAAGGCTATGACGATGGATTTGCCTTGATTGCTGTGATTTCAGGTCTGCAGGATGAAAGACTGCTCAACTCGACCGGTGAGAGACAACCACGAACATACGCAGAATTCATGACCCGAGCACAAAGGTACATAAGCGCCGAGGAACTGCTAAGGTCCAAACAAGAAGAGAAAGTGGCCAAAGCCGACAAGAGAAGTCCTCGGCCAATGGCAGAGGCCGACCAGAGACCAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGGTCAAGGTAAAGGCGGTTTCAACCCATCGCTCGAATTACGTACAATTTTAGGAGGACTATCCGGTGGAGAGTCAGACAGAAAGCGAAAGGTCGCGATTCGAGAGGCACAACGAGAGCCTGAAGGGCAAGAAGTTTACAGCTGCTTGAAGAAAGGCCCGGGAACTCCTAAGTCTCCCCAGGCTATTCCCAGGAGAGTGTACGCACCCCTGGGATGA

Coding sequence (CDS)

ATGATCCCTTTCTTCTCTTACTTTCCTGCTTTCCGCCCGTTTTATGACTTAAGGATCAGAGGTGATATGGCCTACACCACACCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCAGGTGAGTCCCTTGGCCAAATTTTGGCATCAAGAGTTGGAGCCGTCTGTGGGGAAGAGTGCTGGCCAGTTCAGTCCGTGCATCGGTGGTGGTCTACAAGAGGGATCGGGTTCAGAAACCAGAAAGAAACCTCGGGTTCCGTGTGCCCACGATGCTGTGGACCTAACCCAAGAGGACAACCAGCAGAAGAACTGGAGTCTGTGCCACTAACGTCTGAGGAAATGCTAAGGTCTAAGCAGAATGAGAGAGAGAGCCGAGAAGTTTCTGTATCCGACAAGCATCGAGAAGTCAGAGGAAAAGGACGCCGGGTAGAAGATGGAGGCCAGATCCAACATGAGCACTCCTCGGCCGATGATCGAGGCCGAGTAGAAGCCCAATTGCAAAAAGACCCGCAGAAGTTCGCCGCTAAAGACAGCGTCAGATTTAGTAACGAAGTTTTGCAGGTAGAAGGCTATGACGATGGATTTGCCTTGATTGCTGTGATTTCAGGTCTGCAGGATGAAAGACTGCTCAACTCGACCGGTGAGAGACAACCACGAACATACGCAGAATTCATGACCCGAGCACAAAGGTACATAAGCGCCGAGGAACTGCTAAGGTCCAAACAAGAAGAGAAAGTGGCCAAAGCCGACAAGAGAAGTCCTCGGCCAATGGCAGAGGCCGACCAGAGACCAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGGTCAAGGTAAAGGCGGTTTCAACCCATCGCTCGAATTACGTACAATTTTAGGAGGACTATCCGGTGGAGAGTCAGACAGAAAGCGAAAGGTCGCGATTCGAGAGGCACAACGAGAGCCTGAAGGGCAAGAAGTTTACAGCTGCTTGAAGAAAGGCCCGGGAACTCCTAAGTCTCCCCAGGCTATTCCCAGGAGAGTGTACGCACCCCTGGGATGA

Protein sequence

MIPFFSYFPAFRPFYDLRIRGDMAYTTPVCSGFCWSCRSGESLGQILASRVGAVCGEECWPVQSVHRWWSTRGIGFRNQKETSGSVCPRCCGPNPRGQPAEELESVPLTSEEMLRSKQNERESREVSVSDKHREVRGKGRRVEDGGQIQHEHSSADDRGRVEAQLQKDPQKFAAKDSVRFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLRSKQEEKVAKADKRSPRPMAEADQRPGSLGVVRNQKPGQGKGGFNPSLELRTILGGLSGGESDRKRKVAIREAQREPEGQEVYSCLKKGPGTPKSPQAIPRRVYAPLG

Homology

[Close]

BLAST of Lag0018690 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-07
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLR 238
           R++NE+ QV+GYDDG AL  ++ GL+  +L  S  +R P +Y+E + RA++Y +AEE  +
Sbjct: 293 RYNNEITQVDGYDDGIALSGIMEGLRMGKLWWSVSKRPPTSYSEMLARAEKYANAEERFK 352

Query: 239 SKQEEK------VAKADKRSPRPMAEADQ-------RPGSLGVVRNQKP 275
           ++ +EK        K D +  R +   DQ       RPG    VR+ +P
Sbjct: 353 NRNQEKGESTKGKKKKDDQRERRVVRPDQSLRRNQFRPGERSEVRDTRP 401

[Close]

BLAST of Lag0018690 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 4.7e-07
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELL- 238
           RF+ E LQVEG  D  ALIA +SG++DERL+ S G+R P T+ E ++RAQ+Y+SA EL+ 
Sbjct: 112 RFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRAQKYMSAGELIH 171

Query: 239 --RSKQEEKVAKADKRSPR 255
             R  + E+   + KR  R
Sbjct: 172 LSRDLERERANYSTKRERR 190

[Close]

BLAST of Lag0018690 vs. NCBI nr
Match: XP_022150104.1 (uncharacterized protein LOC111018365 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 4.7e-07
Identity = 57/194 (29.38%), Postives = 89/194 (45.88%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLR 238
           RF+ E LQVEG  D  +L+A +SG++DE L  S  ++ P T++E ++RAQRY+SA E   
Sbjct: 60  RFNEEKLQVEGLTDTVSLLAFMSGVRDEHLSFSFRKKTPSTFSEELSRAQRYMSAGEFFY 119

Query: 239 SKQEEKVAKADKRSPR-----PMAEADQRPGS---------------------------- 298
           SK+E    + D++  R     P +  ++R  S                            
Sbjct: 120 SKREPDEKRTDQKRERSGDKPPRSRWEKRDRSSQKDPPQKFEKYTPTTVPLEQDHGHATQ 179

Query: 299 ---------LGVVR----------NQKPGQGKGGFNPSLELRTILGGLSGGESDRKRKVA 321
                     G++R          ++    G+   +P+ E+RTI+GGL   ES RK K  
Sbjct: 180 DCFDLKEEVKGLIRMGYLKEYVEDSKATQNGESDKSPAREIRTIIGGLIERESGRKIKAD 239

[Close]

BLAST of Lag0018690 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 8.0e-07
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLR 238
           RF+ E LQVEG  D  +L+A +SG++DE L  S G+R P T++E ++RAQRY+SA E   
Sbjct: 296 RFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFY 355

Query: 239 SKQEEKVAKADKRSPR 255
           SK+E    + D +  R
Sbjct: 356 SKREPDGKRTDPKRER 371

[Close]

BLAST of Lag0018690 vs. NCBI nr
Match: XP_024047974.1 (uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 uncharacterized protein LOC112498174 [Citrus sinensis])

HSP 1 Score: 63.2 bits (152), Expect = 5.2e-06
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLR 238
           R++ E  QV+GYDDG AL  ++ GLQ  RL  S  +  P TY+E ++RA++Y +AEE  +
Sbjct: 135 RYNAETTQVDGYDDGVALSGLMEGLQMGRLWWSVAKNPPSTYSEMLSRAEKYANAEERFQ 194

Query: 239 SKQEEKVAKADKRSPRPMAEADQRPG 265
           SK+  +  ++ K         D RPG
Sbjct: 195 SKKGREKGESSKNKKTKEDRRDIRPG 220

[Close]

BLAST of Lag0018690 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-07
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELL- 238
           RF+ E LQVEG  D  ALIA +SG++DERL+ S G+R P T+ E ++RAQ+Y+SA EL+ 
Sbjct: 112 RFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRAQKYMSAGELIH 171

Query: 239 --RSKQEEKVAKADKRSPR 255
             R  + E+   + KR  R
Sbjct: 172 LSRDLERERANYSTKRERR 190

[Close]

BLAST of Lag0018690 vs. ExPASy TrEMBL
Match: A0A6J1D911 (uncharacterized protein LOC111018365 OS=Momordica charantia OX=3673 GN=LOC111018365 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-07
Identity = 57/194 (29.38%), Postives = 89/194 (45.88%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLR 238
           RF+ E LQVEG  D  +L+A +SG++DE L  S  ++ P T++E ++RAQRY+SA E   
Sbjct: 60  RFNEEKLQVEGLTDTVSLLAFMSGVRDEHLSFSFRKKTPSTFSEELSRAQRYMSAGEFFY 119

Query: 239 SKQEEKVAKADKRSPR-----PMAEADQRPGS---------------------------- 298
           SK+E    + D++  R     P +  ++R  S                            
Sbjct: 120 SKREPDEKRTDQKRERSGDKPPRSRWEKRDRSSQKDPPQKFEKYTPTTVPLEQDHGHATQ 179

Query: 299 ---------LGVVR----------NQKPGQGKGGFNPSLELRTILGGLSGGESDRKRKVA 321
                     G++R          ++    G+   +P+ E+RTI+GGL   ES RK K  
Sbjct: 180 DCFDLKEEVKGLIRMGYLKEYVEDSKATQNGESDKSPAREIRTIIGGLIERESGRKIKAD 239

[Close]

BLAST of Lag0018690 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-07
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLR 238
           RF+ E LQVEG  D  +L+A +SG++DE L  S G+R P T++E ++RAQRY+SA E   
Sbjct: 296 RFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFY 355

Query: 239 SKQEEKVAKADKRSPR 255
           SK+E    + D +  R
Sbjct: 356 SKREPDGKRTDPKRER 371

[Close]

BLAST of Lag0018690 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-06
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLR 238
           RF+ E LQ+EG  D  +L+A +SG++DE L  S  +R P T++E ++RAQRY+SA E   
Sbjct: 201 RFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTPSTFSEALSRAQRYMSASEFCY 260

Query: 239 SKQEEKVAKADKRSPR 255
           SK+E    + D++  R
Sbjct: 261 SKREPDGKRTDQKRER 276

[Close]

BLAST of Lag0018690 vs. ExPASy TrEMBL
Match: A0A6J1DYL6 (uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025785 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-06
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 179 RFSNEVLQVEGYDDGFALIAVISGLQDERLLNSTGERQPRTYAEFMTRAQRYISAEELLR 238
           RF+ E LQ+E   D  +L+A +SG++DE L  S G++ P T++E ++RAQRY+SA E   
Sbjct: 80  RFNKEKLQIESLTDVVSLLAFMSGVRDEHLSFSFGKKTPSTFSETLSRAQRYMSAGEFFY 139

Query: 239 SKQEEKVAKADKRSPR 255
           SK+E    + D++  R
Sbjct: 140 SKREPDGKRTDQKRER 155

The following BLAST results are available for this feature:

BLAST of Lag0018690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024041095.1	1.6e-07	35.78	uncharacterized protein LOC112098853 [Citrus clementina]	[more]
XP_022158344.1	4.7e-07	48.10	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_022150104.1	4.7e-07	29.38	uncharacterized protein LOC111018365 [Momordica charantia]	[more]
XP_022158830.1	8.0e-07	46.05	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_024047974.1	5.2e-06	39.53	uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 unchara...	[more]

BLAST of Lag0018690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0018690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZ49	2.3e-07	48.10	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D911	2.3e-07	29.38	uncharacterized protein LOC111018365 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DWY0	3.9e-07	46.05	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1E1E7	4.3e-06	43.42	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DYL6	9.6e-06	42.11	uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Lag0018690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018690.1	Lag0018690.1	mRNA