Lag0018680 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018680
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr5: 32388026 .. 32391503 (+)
RNA-Seq ExpressionLag0018680
SyntenyLag0018680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGAGGCAGTATGTTTCCAACCCCTTTTGTTACTCCTATTTTTCTATCCATAATTATATTTAAATATGCTCTCTTGTTTCATTACTTAGATTTATATTTTTAATACCTCGGTCCATCTTTTGACAGATTCAATCCTTTTACTTCTGCTGAGATGTGAATCACTGTAACATGAATTTAATGCTTTGAGACCTCACAATCAATATATTAAATTTGGCAATCTTTTGACAGCTTAGAGGCAGATACGGTGAGGCTTATGTATTTACAATGACAACATCCCCTACTCATGAGGGAGAAGTTGAGAACATGGTGAAGCGTTTGGCCCCTGGAGCTAGCAAGATTTACCACTTATCTGGAACACAAAAATTTCTTTTGAAGTTATCATCTAGGACCTTATTTGAAGTGCAGTTAAAAATATTAATGTCGACTGTTCTTAATTACTAGTTTTTTTTAAAACATATTTCTACATGAAAATGGAGGAAACATGAACCTCTATAGATGATGATGGTACATAAAAATATGACTTTTCGGATTCTGGGTGTAAAAGCATCTGAAATATGAAAGGAAGTTGACCTCTGGATCTTTATTATTTCTTGTACTTTCTTTTATAGGAAATCAAAACTTCTCATCAGATGTAAGTATCTATGAACTGCAAATCTATAATTTCTTTCAACTTTTGTTTTCTACATTGTACAATAAGCATCCATGAACTGCAAATCTACAGGTAAGTTTAGCCTTTTTGTTATCTGCAGGTTTTCTGTGAATTTGATTTGGAATTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATTTTATTTTTATACTTTGTTTTCACGTATTATCAGGAGTTCACAGATACTTTGATCAAGGAGGAAGAATTATCTGAAAGTCAAAAGGATGCCTTTAAGGTAATGGTTTGTCAAGTGTTACAACCAAGTTGAGTTCTTACTAGTATTATTCAAATTAATCGGTCAACCACTCAAATTTCTTGTAGGTATCTTTCTGTGACGTTTTCTGATGTCGTATGTCTTTACTAATATTCTTTGTTATTTTTTTCAAGATCATTTGCCTTTATGTAAACACTCTGTTCGTAAGAAATTTATCTTACTAATAAATCTAACAGATTTTTGTATTTTTCCTAACTGCCTGCATTATTGTACTGATGTTATTGCATTACCTCGTGAGAATGATGGCTCCATTTGAACTAGTAGACTGTGGATTTGGGGACAAAATCAGGTTTTAATTTATTTGTTTTAAATGTTGATGTTCTTTTGTAAACTTCTCTAACTTCCTTTCCATTTCAAACTTTCTTATTTGAATGCAAAATATGTTTATGTAAGTTTACCAACTGAGCAGAACTAATTTGAAGTCTTTAGTCTAGGACCAAGTCTTGCTTCTTGGGTGGAAAACACAGGTACTCATGTAAATTTAAGCGTCTTAAGCAAAACAAACAAATTAATATGTTAGTTAGATGAAAAGCATGGATGTTGATGGATCTTGAGATAATTGTGTGTATGTCATCTCCTACTTTTGATACATCCTAGGCTCATTAGTTGATTTATGGATTGGCTCCCTATTAGTTCATTCTATTTGGTGAAGAATAATAATACTAGTATGTTGTTGCTTCTGTTTTGTCAATGTGATGAAATTATTTGCTTATTGAACTTTTTTCTGCAAGTTATAGGGTATATTTAAGTGTCTTTTGTTTTTTTTCTTCTTTTCAAGTGGTGAGCTAGAAAAATTGGTAATTGGCTTCTTGCTTACTGCACACCAAGTGTTTGTAGAATTTATTTGTGAATTTACTTTTACACTAATGAATATTACTGCACACCAAGTGTTCTATAATCCTCTAGATGTTGTTGGTTATTAGCTCTACTTTACTCGTACGTCTTGTAACTTTGGTTTTAGTCTAAGGATTTGATTGGAGATGTGTGTCGATTGTATTTTACTTACGTTTTTGCTTTGTATAAGGTTTGGAATTCTTGTTAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTCGAAAGGGAGCTCGAAGAGGAACTTGGCCGGAAAGAGCGTAGAAGGAGTTGTGTACTTATTTTGTTTAATAATTTTACTTTTTGTTTGTAAATTGGTTCATGGATGTGTGATTTGTTGATAGACGAAAAGTCTCATGTATTATATACACTATTATATTTTATTAATTAAATCCATGTTCGTTGAGTTAGTTGTTGTGTAAAAATACTTTCGAGATTTTATTTTGTGTATATGTTGACATTTTATTTTGTTTAGAGGTTTTTACAAAATGAAGAAATAGTATTGTTGGTTAGCAACGTGTGCAACCAACAATTTTTTTTTATTTTAATATCGCACATTTAATGCCGGACGCTTTTAATGTCGCACATCTAATGTCGGACACTTTTAATGTCACAACTTTTAATGTCGGACAATGACCGACATAAAAAACTGACTGACATTAAAAATGATTTTTAATGTCGGACAAAGAGTGGTTGACCGACATAAAAAGTGCACTTTTAATGTCGGTCAAAGCTTGTTGAATGACATTAAAAGGGCCCTTTTAATGTCGGGCAATGACCGACATTAAAAGGGTACTTTTAATGTCGGACAACTCTTTTAATGTCGGATAATGACAGACATTAAAAGCGACCAACATTAAAAGTGACCGACATTAAAACTTTTAATGTCGGTGTTTTTAATGTCGGTCAGTGACCGACATTAAAAGCCAGATTTGTTGTAGTGTGGGTAGTTTAATGTATGGAATGACATGTACACGACCTGATTTAGCCTTTGCTATGAGCACAGTGAGTAGATATATATATGAGTGATCCATGAAAACCCCATTGGGAGGCAGTAAAATGGGTGATTAGATACATAAAAGGCAGCTTAAATCATGGACTAATCTACTCAAGAGGGAGTTCTAAAGATGTGTGTTTAGTTGGTTATGCAGATGCTAACTTTGCTGCTGATTTAGATAAAAGGAGATCAACTTCTGGGTATGTATTTACTTTGTTTGGGAACACAATTAGTTGGAAATCTCAGTTACAATTTGTTACTGCTTTATCGACCACAGAATCTGAATATATCTCCTTGGCAGAATGTGTGAAGGAAGGTATTTGGCTGCAAGGGTTAATTAATGAATTGCTTGGAAATATTGATTTGTTTACTGTTTTTAGTGACAGCCAAAGTGCCCTTGCACTTTCAAAAAATCTGTTGTATCATGATCGACCAAAGCATATCGACATCCGCTACCACTACATCAGAGAGAAAGTTTTAAACAATGAAGTCAAGCTGGAGAAAATCTCTTCAGCAAATAATCCAGTAGATATGCTTACTAAATCTTTGTCAGCCTTAAGGACGCTTCACCTAATGAACCTAATGAAGGTAGGTGTGGGCTAA

mRNA sequence

ATGCCAGAGGCACTTAGAGGCAGATACGGTGAGGCTTATGTATTTACAATGACAACATCCCCTACTCATGAGGGAGAAGTTGAGAACATGGAGTTCACAGATACTTTGATCAAGGAGGAAGAATTATCTGAAAGTCAAAAGGATGCCTTTAAGATTTTTGTATTTTTCCTAACTGCCTGCATTATTGTACTGATGTTATTGCATTACCTCGTGAGAATGATGGCTCCATTTGAACTAGTAGACTGTGGATTTGGGGACAAAATCAGGTTTGGAATTCTTGTTAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTCGAAAGGGAGCTCGAAGAGGAACTTGGCCGGAAAGAGCGTAGAAGGAGTTGTCTTAAATCATGGACTAATCTACTCAAGAGGGAGTTCTAAAGATGTGTGTTTAGTTGGTTATGCAGATGCTAACTTTGCTGCTGATTTAGATAAAAGGAGATCAACTTCTGGGTATGTATTTACTTTGTTTGGGAACACAATTAGTTGGAAATCTCAGTTACAATTTGTTACTGCTTTATCGACCACAGAATCTGAATATATCTCCTTGGCAGAATGTGTGAAGGAAGGTATTTGGCTGCAAGGGTTAATTAATGAATTGCTTGGAAATATTGATTTGTTTACTGTTTTTAGTGACAGCCAAAGTGCCCTTGCACTTTCAAAAAATCTGTTGTATCATGATCGACCAAAGCATATCGACATCCGCTACCACTACATCAGAGAGAAAGTTTTAAACAATGAAGTCAAGCTGGAGAAAATCTCTTCAGCAAATAATCCAGTAGATATGCTTACTAAATCTTTGTCAGCCTTAAGGACGCTTCACCTAATGAACCTAATGAAGGTAGGTGTGGGCTAA

Coding sequence (CDS)

ATGCCAGAGGCACTTAGAGGCAGATACGGTGAGGCTTATGTATTTACAATGACAACATCCCCTACTCATGAGGGAGAAGTTGAGAACATGGAGTTCACAGATACTTTGATCAAGGAGGAAGAATTATCTGAAAGTCAAAAGGATGCCTTTAAGATTTTTGTATTTTTCCTAACTGCCTGCATTATTGTACTGATGTTATTGCATTACCTCGTGAGAATGATGGCTCCATTTGAACTAGTAGACTGTGGATTTGGGGACAAAATCAGGTTTGGAATTCTTGTTAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTCGAAAGGGAGCTCGAAGAGGAACTTGGCCGGAAAGAGCGTAGAAGGAGTTGTCTTAAATCATGGACTAATCTACTCAAGAGGGAGTTCTAAAGATGTGTGTTTAGTTGGTTATGCAGATGCTAACTTTGCTGCTGATTTAGATAAAAGGAGATCAACTTCTGGGTATGTATTTACTTTGTTTGGGAACACAATTAGTTGGAAATCTCAGTTACAATTTGTTACTGCTTTATCGACCACAGAATCTGAATATATCTCCTTGGCAGAATGTGTGAAGGAAGGTATTTGGCTGCAAGGGTTAATTAATGAATTGCTTGGAAATATTGATTTGTTTACTGTTTTTAGTGACAGCCAAAGTGCCCTTGCACTTTCAAAAAATCTGTTGTATCATGATCGACCAAAGCATATCGACATCCGCTACCACTACATCAGAGAGAAAGTTTTAAACAATGAAGTCAAGCTGGAGAAAATCTCTTCAGCAAATAATCCAGTAGATATGCTTACTAAATCTTTGTCAGCCTTAAGGACGCTTCACCTAATGAACCTAATGAAGGTAGGTGTGGGCTAA

Protein sequence

MPEALRGRYGEAYVFTMTTSPTHEGEVENMEFTDTLIKEEELSESQKDAFKIFVFFLTACIIVLMLLHYLVRMMAPFELVDCGFGDKIRFGILVKRELLQMMKWIFSKGSSKRNLAGKSVEGVVLNHGLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALSTTESEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRPKHIDIRYHYIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKVGVG
Homology
BLAST of Lag0018680 vs. NCBI nr
Match: KAG8490001.1 (hypothetical protein CXB51_016020 [Gossypium anomalum])

HSP 1 Score: 170.6 bits (431), Expect = 2.0e-38
Identity = 81/164 (49.39%), Postives = 119/164 (72.56%), Query Frame = 0

Query: 128 GLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALSTTE 187
           GL++ + ++    ++GY D+ +A DLDKRRST+GYVFTL G  ISWKS LQF  ALSTTE
Sbjct: 608 GLLFKQDNTLGKGVIGYVDSGYAGDLDKRRSTTGYVFTLAGGPISWKSTLQFTVALSTTE 667

Query: 188 SEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRPKHIDIRYH 247
           +EY+++ E VKE IWLQG++  L    +   V+ DSQSA+ L+KN +YH R KHID+R+H
Sbjct: 668 AEYMAVTEAVKEAIWLQGMVKTLGLVQEHINVYCDSQSAIHLAKNQVYHARTKHIDVRFH 727

Query: 248 YIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
           ++RE +   ++ L+KI +A+NP DM+TK ++A +  H +NL+ +
Sbjct: 728 FVREIIDEGKICLQKIKTADNPADMMTKVVTATKFEHCLNLINI 771

BLAST of Lag0018680 vs. NCBI nr
Match: KAG8500047.1 (hypothetical protein CXB51_003575 [Gossypium anomalum])

HSP 1 Score: 169.1 bits (427), Expect = 5.7e-38
Identity = 85/172 (49.42%), Postives = 121/172 (70.35%), Query Frame = 0

Query: 129  LIYSRGSSKDVCL---------VGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQF 188
            L Y RG++ DVCL         +GY DA+FA DLD+RRS +GYVFT+ G  ISWK+ LQ 
Sbjct: 1120 LRYLRGTT-DVCLQFGRTEDGVIGYVDADFAGDLDRRRSLTGYVFTIGGCAISWKATLQT 1179

Query: 189  VTALSTTESEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRP 248
              ALSTTE+EY+++ E  KE IWL+GL NEL  ++ + TVF DSQSA+ L+K+ ++H+R 
Sbjct: 1180 TVALSTTEAEYMAITEACKEAIWLKGLFNELNEDLQISTVFCDSQSAIFLTKDQMFHERT 1239

Query: 249  KHIDIRYHYIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
            KHID+RYH++R+ +   ++ + KIS+  NP DM+TKSL   +  H ++L+ V
Sbjct: 1240 KHIDVRYHFVRDIIARGDIVVSKISTHENPADMMTKSLPITKFEHCLDLVGV 1290

BLAST of Lag0018680 vs. NCBI nr
Match: KAG8491911.1 (hypothetical protein CXB51_015266 [Gossypium anomalum])

HSP 1 Score: 169.1 bits (427), Expect = 5.7e-38
Identity = 85/172 (49.42%), Postives = 121/172 (70.35%), Query Frame = 0

Query: 129  LIYSRGSSKDVCL---------VGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQF 188
            L Y RG++ DVCL         +GY DA+FA DLD+RRS +GYVFT+ G  ISWK+ LQ 
Sbjct: 1100 LRYLRGTT-DVCLQFGRTEDGVIGYVDADFAGDLDRRRSLTGYVFTIGGCAISWKATLQT 1159

Query: 189  VTALSTTESEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRP 248
              ALSTTE+EY+++ E  KE IWL+GL +EL  N+ + TVF DSQSA+ L+K+ ++H+R 
Sbjct: 1160 TVALSTTEAEYMAITEACKEAIWLKGLFSELNENLQISTVFCDSQSAIFLTKDQMFHERT 1219

Query: 249  KHIDIRYHYIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
            KHID+RYH++R+ +   ++ + KIS+  NP DM+TKSL   +  H ++L+ V
Sbjct: 1220 KHIDVRYHFVRDIIARGDIVVSKISTHENPADMMTKSLPITKFEHCLDLVGV 1270

BLAST of Lag0018680 vs. NCBI nr
Match: KAG8503419.1 (hypothetical protein CXB51_001394 [Gossypium anomalum])

HSP 1 Score: 169.1 bits (427), Expect = 5.7e-38
Identity = 85/172 (49.42%), Postives = 121/172 (70.35%), Query Frame = 0

Query: 129  LIYSRGSSKDVCL---------VGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQF 188
            L Y RG++ DVCL         +GY DANFA DLD+RRS +GYVFT+ G  ISWK+ LQ 
Sbjct: 1131 LRYLRGTT-DVCLQFGRTEDGVIGYVDANFAGDLDRRRSLTGYVFTIGGCAISWKATLQT 1190

Query: 189  VTALSTTESEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRP 248
              ALSTTE+EY+++ E  KE IWL+GL +EL  ++ + TVF DSQSA+ L+K+ ++H+R 
Sbjct: 1191 TVALSTTEAEYMAITEACKEAIWLKGLFSELNEDLQISTVFCDSQSAIFLTKDQMFHERT 1250

Query: 249  KHIDIRYHYIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
            KHID+RYH++R+ +   ++ + KIS+  NP DM+TKSL   +  H ++L+ V
Sbjct: 1251 KHIDVRYHFVRDIIARGDIVVSKISTHENPADMMTKSLPITKFEHCLDLVGV 1301

BLAST of Lag0018680 vs. NCBI nr
Match: KAG8474379.1 (hypothetical protein CXB51_033977 [Gossypium anomalum])

HSP 1 Score: 169.1 bits (427), Expect = 5.7e-38
Identity = 85/172 (49.42%), Postives = 121/172 (70.35%), Query Frame = 0

Query: 129  LIYSRGSSKDVCL---------VGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQF 188
            L Y RG++ DVCL         +GY DANFA DLD+RRS +GYVFT+ G  ISWK+ LQ 
Sbjct: 1109 LRYLRGTT-DVCLQFGRTEDGVIGYVDANFAGDLDRRRSLTGYVFTIGGCAISWKATLQT 1168

Query: 189  VTALSTTESEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRP 248
              ALSTTE+EY+++ E  KE IWL+GL +EL  ++ + TVF DSQSA+ L+K+ ++H+R 
Sbjct: 1169 TVALSTTEAEYMAITEACKEAIWLKGLFSELNEDLQISTVFCDSQSAIFLTKDQMFHERT 1228

Query: 249  KHIDIRYHYIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
            KHID+RYH++R+ +   ++ + KIS+  NP DM+TKSL   +  H ++L+ V
Sbjct: 1229 KHIDVRYHFVRDIIARGDIVVSKISTNENPADMMTKSLPITKFEHCLDLVVV 1279

BLAST of Lag0018680 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-33
Identity = 74/138 (53.62%), Postives = 97/138 (70.29%), Query Frame = 0

Query: 138  DVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALSTTESEYISLAECV 197
            D  L GY DA+ A D+D R+S++GY+FT  G  ISW+S+LQ   ALSTTE+EYI+  E  
Sbjct: 1172 DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETG 1231

Query: 198  KEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRPKHIDIRYHYIREKVLNNE 257
            KE IWL+  + EL  +   + V+ DSQSA+ LSKN +YH R KHID+RYH+IRE V +  
Sbjct: 1232 KEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDES 1291

Query: 258  VKLEKISSANNPVDMLTK 276
            +K+ KIS+  NP DMLTK
Sbjct: 1292 LKVLKISTNENPADMLTK 1309

BLAST of Lag0018680 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-23
Identity = 61/161 (37.89%), Postives = 99/161 (61.49%), Query Frame = 0

Query: 129  LIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFG-NTISWKSQLQFVTALSTTE 188
            LI+ +  + +  ++GY D+++A     R+ST+GY+F +F  N I W ++ Q   A S+TE
Sbjct: 1236 LIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTE 1295

Query: 189  SEYISLAECVKEGIWLQGLINELLGNIDL---FTVFSDSQSALALSKNLLYHDRPKHIDI 248
            +EY++L E V+E +WL+ L+  +  NI L     ++ D+Q  ++++ N   H R KHIDI
Sbjct: 1296 AEYMALFEAVREALWLKFLLTSI--NIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDI 1355

Query: 249  RYHYIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHL 286
            +YH+ RE+V NN + LE I + N   D+ TK L A R + L
Sbjct: 1356 KYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVEL 1394

BLAST of Lag0018680 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-17
Identity = 62/171 (36.26%), Postives = 94/171 (54.97%), Query Frame = 0

Query: 126  NHGLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALST 185
            NHG+   +G++  + L  Y+DA++A D D   ST+GY+  L  + ISW S+ Q     S+
Sbjct: 1296 NHGIFLKKGNT--LSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSS 1355

Query: 186  TESEYISLAECVKEGIWLQGLINELLGNIDLF---TVFSDSQSALALSKNLLYHDRPKHI 245
            TE+EY S+A    E  W+  L+ EL   I L     ++ D+  A  L  N ++H R KHI
Sbjct: 1356 TEAEYRSVANTSSEMQWICSLLTEL--GIRLTRPPVIYCDNVGATYLCANPVFHSRMKHI 1415

Query: 246  DIRYHYIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKVGV 294
             I YH+IR +V +  +++  +S+ +   D LTK LS  RT       K+GV
Sbjct: 1416 AIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLS--RTAFQNFASKIGV 1460

BLAST of Lag0018680 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.9e-17
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 0

Query: 126  NHGLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALST 185
            +HG+   +G++  + L  Y+DA++A D D   ST+GY+  L  + ISW S+ Q     S+
Sbjct: 1279 DHGIFLKKGNT--LSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSS 1338

Query: 186  TESEYISLAECVKEGIWLQGLINELLGNIDLF---TVFSDSQSALALSKNLLYHDRPKHI 245
            TE+EY S+A    E  W+  L+ EL   I L     ++ D+  A  L  N ++H R KHI
Sbjct: 1339 TEAEYRSVANTSSELQWICSLLTEL--GIQLSHPPVIYCDNVGATYLCANPVFHSRMKHI 1398

Query: 246  DIRYHYIREKVLNNEVKLEKISSANNPVDMLTKSLS 279
             + YH+IR +V +  +++  +S+ +   D LTK LS
Sbjct: 1399 ALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLS 1430

BLAST of Lag0018680 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.6e-14
Identity = 39/78 (50.00%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 127 HGLIYSR-GSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALST 186
           +GL ++R G++K   LVGY+DA++A D++ RRSTSGY+F L G  +SW+S+ Q   ALS+
Sbjct: 59  YGLEFTRAGTAK---LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSS 118

Query: 187 TESEYISLAECVKEGIWL 204
           TE EY++L+E  +E +WL
Sbjct: 119 TEDEYMALSEATQEAVWL 133

BLAST of Lag0018680 vs. ExPASy TrEMBL
Match: A0A2R6QHR4 (Endonuclease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18495 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.8e-38
Identity = 88/192 (45.83%), Postives = 125/192 (65.10%), Query Frame = 0

Query: 100  QMMKWIFSKGSSKRNLAGKSVEGVVLNHGLIYSRGSSKDVCLVGYADANFAADLDKRRST 159
            Q +KWI            + + G V N GL + R        VGY D+++A DLDKRRST
Sbjct: 1097 QAVKWIL-----------RYIHGTV-NVGLKFQRDDKSSQYSVGYVDSDYAGDLDKRRST 1156

Query: 160  SGYVFTLFGNTISWKSQLQFVTALSTTESEYISLAECVKEGIWLQGLINELLGNIDLFTV 219
            +GYVFT+ G  + W+S LQ   ALSTTE+EY+++ E  KE IWL GLIN+L  + +   V
Sbjct: 1157 TGYVFTMAGGPVCWRSTLQSTVALSTTEAEYMAVTEAFKEAIWLHGLINDLGIDQEHVDV 1216

Query: 220  FSDSQSALALSKNLLYHDRPKHIDIRYHYIREKVLNNEVKLEKISSANNPVDMLTKSLSA 279
            + DSQSA+ L+KN ++H R KHID+R+H+IRE +   +V LEKIS+ +NP DMLTK +S 
Sbjct: 1217 YCDSQSAICLAKNQVHHSRTKHIDVRFHFIREILNEGDVLLEKISTKDNPADMLTKVVSG 1276

Query: 280  LRTLHLMNLMKV 292
            ++  H ++L+ +
Sbjct: 1277 IKFKHCLDLINI 1276

BLAST of Lag0018680 vs. ExPASy TrEMBL
Match: A0A4Y1QXX8 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_005583 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-38
Identity = 79/164 (48.17%), Postives = 117/164 (71.34%), Query Frame = 0

Query: 128 GLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALSTTE 187
           GL++        C+VGY D+++A DLDKRRST+G+VFT+ G  +SW+S LQ   ALSTTE
Sbjct: 644 GLLFQHDKVTGQCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTE 703

Query: 188 SEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRPKHIDIRYH 247
           +EY+++ E +KE IWLQGL+ +L    D   V  DSQSA+ L+KN ++H R KHID+R+H
Sbjct: 704 AEYMAVTEAIKEAIWLQGLLGDLGVQQDHVDVHCDSQSAIYLAKNQVHHARTKHIDVRFH 763

Query: 248 YIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
           ++RE +   ++ L+KI +A+NP DMLTK +S L+  H ++L+ +
Sbjct: 764 FVREIIEEGDILLQKIGTADNPADMLTKPISLLKFKHCLDLIGI 807

BLAST of Lag0018680 vs. ExPASy TrEMBL
Match: A0A5H2XPK4 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_655S000400 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-38
Identity = 79/164 (48.17%), Postives = 117/164 (71.34%), Query Frame = 0

Query: 128 GLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALSTTE 187
           GL++        C+VGY D+++A DLDKRRST+G+VFT+ G  +SW+S LQ   ALSTTE
Sbjct: 628 GLLFQHDKVTGQCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTE 687

Query: 188 SEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRPKHIDIRYH 247
           +EY+++ E +KE IWLQGL+ +L    D   V  DSQSA+ L+KN ++H R KHID+R+H
Sbjct: 688 AEYMAVTEAIKEAIWLQGLLGDLGVQQDHVDVHCDSQSAIYLAKNQVHHARTKHIDVRFH 747

Query: 248 YIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
           ++RE +   ++ L+KI +A+NP DMLTK +S L+  H ++L+ +
Sbjct: 748 FVREIIEEGDILLQKIGTADNPADMLTKPISLLKFKHCLDLIGI 791

BLAST of Lag0018680 vs. ExPASy TrEMBL
Match: A0A4Y1QM47 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_000828 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-38
Identity = 79/164 (48.17%), Postives = 117/164 (71.34%), Query Frame = 0

Query: 128  GLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALSTTE 187
            GL++        C+VGY D+++A DLDKRRST+G+VFT+ G  +SW+S LQ   ALSTTE
Sbjct: 1181 GLLFQHDKVTGQCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTE 1240

Query: 188  SEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRPKHIDIRYH 247
            +EY+++ E +KE IWLQGL+ +L    D   V  DSQSA+ L+KN ++H R KHID+R+H
Sbjct: 1241 AEYMAVTEAIKEAIWLQGLLGDLGVQQDHVDVHCDSQSAIYLAKNQVHHARTKHIDVRFH 1300

Query: 248  YIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
            ++RE +   ++ L+KI +A+NP DMLTK +S L+  H ++L+ +
Sbjct: 1301 FVREIIEEGDILLQKIGTADNPADMLTKPISLLKFKHCLDLIGI 1344

BLAST of Lag0018680 vs. ExPASy TrEMBL
Match: A0A4Y1RM13 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_016656 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-38
Identity = 79/164 (48.17%), Postives = 117/164 (71.34%), Query Frame = 0

Query: 128 GLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQFVTALSTTE 187
           GL++        C+VGY D+++A DLDKRRST+G+VFT+ G  +SW+S LQ   ALSTTE
Sbjct: 628 GLLFQHDKVTGQCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTE 687

Query: 188 SEYISLAECVKEGIWLQGLINELLGNIDLFTVFSDSQSALALSKNLLYHDRPKHIDIRYH 247
           +EY+++ E +KE IWLQGL+ +L    D   V  DSQSA+ L+KN ++H R KHID+R+H
Sbjct: 688 AEYMAVTEAIKEAIWLQGLLGDLGVQQDHVDVHCDSQSAIYLAKNQVHHARTKHIDVRFH 747

Query: 248 YIREKVLNNEVKLEKISSANNPVDMLTKSLSALRTLHLMNLMKV 292
           ++RE +   ++ L+KI +A+NP DMLTK +S L+  H ++L+ +
Sbjct: 748 FVREIIEEGDILLQKIGTADNPADMLTKPISLLKFKHCLDLIGI 791

BLAST of Lag0018680 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-15
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 0

Query: 120 VEGVVLNHGLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQF 179
           ++G V   GL YS  S  ++ L  ++DA+F +  D RRST+GY   L  + ISWKS+ Q 
Sbjct: 424 IKGTV-GQGLFYS--SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQ 483

Query: 180 VTALSTTESEYISLAECVKEGIWLQGLINELLGNIDLFT-VFSDSQSALALSKNLLYHDR 239
           V + S+ E+EY +L+    E +WL     EL   +   T +F D+ +A+ ++ N ++H+R
Sbjct: 484 VVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHER 543

Query: 240 PKHIDIRYHYIREK 253
            KHI+   H +RE+
Sbjct: 544 TKHIESDCHSVRER 554

BLAST of Lag0018680 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 5.2e-05
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 120 VEGVVLNHGLIYSRGSSKDVCLVGYADANFAADLDKRRSTSGYVFTLFGNTISWKSQLQF 179
           V+G +  HGL   + S  +V    + D+++A     RRST+G+   L  N ISW ++ Q 
Sbjct: 146 VKGTIF-HGLYIHKNSKLNV--QAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQP 205

Query: 180 VTALSTTESEYISLAECVKEGIW 203
             + S+TE+EY +LA    E  W
Sbjct: 206 TVSRSSTETEYRALALTAAELTW 225

BLAST of Lag0018680 vs. TAIR 10
Match: AT5G61740.1 (ABC2 homolog 14 )

HSP 1 Score: 43.1 bits (100), Expect = 4.4e-04
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 0

Query: 2   PEALRGRYGEAYVFTMTTSPTHEGEVENM 31
           P+ L+GRYG +YVFTMTTS  HE +VE M
Sbjct: 747 PKELKGRYGGSYVFTMTTSVEHEEKVERM 775

BLAST of Lag0018680 vs. TAIR 10
Match: AT3G47780.1 (ABC2 homolog 6 )

HSP 1 Score: 42.0 bits (97), Expect = 9.9e-04
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 0

Query: 2   PEALRGRYGEAYVFTMTTSPTHEGEVENM 31
           P+ L+GRYG +YVFTMTTS  HE  VE +
Sbjct: 834 PKELKGRYGGSYVFTMTTSSEHEQNVEKL 862

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG8490001.12.0e-3849.39hypothetical protein CXB51_016020 [Gossypium anomalum][more]
KAG8500047.15.7e-3849.42hypothetical protein CXB51_003575 [Gossypium anomalum][more]
KAG8491911.15.7e-3849.42hypothetical protein CXB51_015266 [Gossypium anomalum][more]
KAG8503419.15.7e-3849.42hypothetical protein CXB51_001394 [Gossypium anomalum][more]
KAG8474379.15.7e-3849.42hypothetical protein CXB51_033977 [Gossypium anomalum][more]
Match NameE-valueIdentityDescription
P109781.2e-3353.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.1e-2337.89Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW21.5e-1736.26Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT949.9e-1735.26Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P0CV724.6e-1450.00Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
A0A2R6QHR42.8e-3845.83Endonuclease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18495 ... [more]
A0A4Y1QXX84.7e-3848.17Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_005583 PE=4 SV=1[more]
A0A5H2XPK44.7e-3848.17Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_655S000400 PE=4 S... [more]
A0A4Y1QM474.7e-3848.17Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_000828 PE=4 SV=1[more]
A0A4Y1RM134.7e-3848.17Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_016656 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.13.3e-1536.57cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.15.2e-0534.94DNA/RNA polymerases superfamily protein [more]
AT5G61740.14.4e-0465.52ABC2 homolog 14 [more]
AT3G47780.19.9e-0462.07ABC2 homolog 6 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 157..281
NoneNo IPR availablePANTHERPTHR11439:SF343SUBFAMILY NOT NAMEDcoord: 157..281
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 142..279
e-value: 1.2189E-70
score: 212.714

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018680.1Lag0018680.1mRNA