Lag0018670 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018670
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr5: 32164300 .. 32164653 (+)
RNA-Seq ExpressionLag0018670
SyntenyLag0018670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCAAGTTTCAACCCCCATGTGTACTACTTGCAATGAAGAGCACTTATTTGAAGATTGTCCTAAGAATCCAGCTTCAGTTTACTTTGTAGGTGAACGTAATAGAGTAAATCCTTACTCCAACACTTTCAATCCAGGATGGAGACAACACCCTAACTTCTCTTGGGGAGGACAACATGTTACCATATCCAACAAAACCCCTTTTGTTAGGCAGGGAGGACCACTAGGGTTTAATAGCCAAACTCAACTGAAGATTGCACAACCTTTGCAGTCGCAATTGCAGCAGCCGATGCAAGTGCAACCCCAATCGACCTCACACTTGGAGAATCTTATGAGGGAACTGATGACCTAG

mRNA sequence

ATGAGCCAAGTTTCAACCCCCATGTGTACTACTTGCAATGAAGAGCACTTATTTGAAGATTGTCCTAAGAATCCAGCTTCAGTTTACTTTGTAGGTGAACGTAATAGAGTAAATCCTTACTCCAACACTTTCAATCCAGGATGGAGACAACACCCTAACTTCTCTTGGGGAGGACAACATGTTACCATATCCAACAAAACCCCTTTTGTTAGGCAGGGAGGACCACTAGGGTTTAATAGCCAAACTCAACTGAAGATTGCACAACCTTTGCAGTCGCAATTGCAGCAGCCGATGCAAGTGCAACCCCAATCGACCTCACACTTGGAGAATCTTATGAGGGAACTGATGACCTAG

Coding sequence (CDS)

ATGAGCCAAGTTTCAACCCCCATGTGTACTACTTGCAATGAAGAGCACTTATTTGAAGATTGTCCTAAGAATCCAGCTTCAGTTTACTTTGTAGGTGAACGTAATAGAGTAAATCCTTACTCCAACACTTTCAATCCAGGATGGAGACAACACCCTAACTTCTCTTGGGGAGGACAACATGTTACCATATCCAACAAAACCCCTTTTGTTAGGCAGGGAGGACCACTAGGGTTTAATAGCCAAACTCAACTGAAGATTGCACAACCTTTGCAGTCGCAATTGCAGCAGCCGATGCAAGTGCAACCCCAATCGACCTCACACTTGGAGAATCTTATGAGGGAACTGATGACCTAG

Protein sequence

MSQVSTPMCTTCNEEHLFEDCPKNPASVYFVGERNRVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHLENLMRELMT
Homology
BLAST of Lag0018670 vs. NCBI nr
Match: XP_030487620.1 (uncharacterized protein LOC115704559 [Cannabis sativa])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 51/111 (45.95%), Postives = 63/111 (56.76%), Query Frame = 0

Query: 9   CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISN 68
           C  C + H FE+CP NPASV +VG +N     NPYSN++NPGW+ HPNFSWGGQ  + S 
Sbjct: 129 CVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPGWKHHPNFSWGGQGASSSG 188

Query: 69  KTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHLENLMRELM 117
                +Q  P GF             SQ  +P Q Q   TS LE+LMR+ M
Sbjct: 189 AQGQGKQSFPPGF-------------SQQPRPQQPQGSQTSSLESLMRDYM 226

BLAST of Lag0018670 vs. NCBI nr
Match: XP_030494694.1 (uncharacterized protein LOC115710474 [Cannabis sativa])

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-16
Identity = 51/112 (45.54%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 9   CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISN 68
           C  C + H FE+CP NPASV +VG +N     NPYSN++NP W+ HPNFSWGGQ  + S 
Sbjct: 200 CVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQGASSSG 259

Query: 69  KTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHLENLMRELMT 118
                +Q    GF+           Q + QQP Q Q   TS LE+LMR+ MT
Sbjct: 260 AQGQEKQSFLPGFSQ----------QPRPQQPHQPQGSQTSSLESLMRDYMT 301

BLAST of Lag0018670 vs. NCBI nr
Match: XP_030509234.1 (uncharacterized protein LOC115723914 [Cannabis sativa])

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-16
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 0

Query: 12  CNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTP 71
           C + H FE+CP NP SV +VG +N     NPYSN++NP W+QHPNFSWGGQ  + S    
Sbjct: 327 CGDGHTFENCPSNPTSVCYVGNQNFNRNSNPYSNSYNPSWKQHPNFSWGGQGASSSGAQA 386

Query: 72  FVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHLENLMRELM 117
             +Q   LGF+           Q + QQP Q Q   TS LE+LMR+ M
Sbjct: 387 QGKQSFALGFSQ----------QPRPQQPHQPQGSQTSSLESLMRDYM 424

BLAST of Lag0018670 vs. NCBI nr
Match: XP_030478190.1 (uncharacterized protein LOC115695250 [Cannabis sativa])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 51/108 (47.22%), Postives = 63/108 (58.33%), Query Frame = 0

Query: 12  CNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTP 71
           C + H FE+CP NPASV +VG +N     NPYSN++NP W+ HPNFSWGGQ  + S    
Sbjct: 232 CCDRHTFENCPSNPASVCYVGNQNFNGNNNPYSNSYNPAWKHHPNFSWGGQGASSSGAQA 291

Query: 72  FVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHLENLMRELM 117
             +Q  P GF+           Q + QQP Q Q   TS LENLMR+ M
Sbjct: 292 QGKQPFPPGFSQ----------QPRPQQPHQPQCSPTSSLENLMRDYM 329

BLAST of Lag0018670 vs. NCBI nr
Match: XP_030510138.1 (uncharacterized protein LOC115724905 [Cannabis sativa])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 50/111 (45.05%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 9   CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISN 68
           C  C + H FE+CP NPASV +VG +N     NPYSN++NP W+ HPNFSWGGQ  + S 
Sbjct: 256 CVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQGASSSG 315

Query: 69  KTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHLENLMRELM 117
                +Q  P GF+               QQP Q Q   TS LE+LMR+ M
Sbjct: 316 AQGQGKQSFPPGFS---------------QQPHQPQGSQTSSLESLMRDYM 351

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030487620.11.9e-1645.95uncharacterized protein LOC115704559 [Cannabis sativa][more]
XP_030494694.15.5e-1645.54uncharacterized protein LOC115710474 [Cannabis sativa][more]
XP_030509234.15.5e-1646.30uncharacterized protein LOC115723914 [Cannabis sativa][more]
XP_030478190.17.2e-1647.22uncharacterized protein LOC115695250 [Cannabis sativa][more]
XP_030510138.17.2e-1645.05uncharacterized protein LOC115724905 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018670.1Lag0018670.1mRNA