Lag0018669 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018669
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr5: 32154798 .. 32164242 (+)
RNA-Seq ExpressionLag0018669
SyntenyLag0018669
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTACCGCCACGAAAAAATAAGGAAATTGAGGCAGCGACGAGACGTTGTCATCTCGGGATTTTTGGCTTGGACATCTGCTACAGCACCGTCGAGATGCCACCAGCTAGTGTCTCGATGCTATGCTATCAGGTCAAATATATGGTTGTTGCAGCTCTTGCTTTTATTGTTCTTCAACTCCCTTGCCTCTTTTTAGGTCTCGAACACTCAAACACTCTTATTTCTCCAATTTGTCCTAAATATTCAATTCCTACAAAAAGAACACAAAAGAGTGTGAAATTCACCAAATAAATCTCAATGACTAACAAATAAACATAGGGAAAAATAACTCGTTATGTGCGCTATCAAGCAATGAAGGTGATGATGTAACTACCTCAATGAATATGTTGAAAATGTACAAATGAACAAATAATGCATTTAGATTTTACAATTGGAAAAAGAAAATGTAAAAAATTGAATCAAATTTATGTTGCATTTGACACTGATTTTAGAGGCCATCAAAGTGATTATAAAATAACTTTAACCATTTTTAGTGTTTGGTAAATCTGATTATAAATTAATTTATATAGAAGTACTTTTTTAATTACGTTGATTTGCAAAAGCCATTAATAGAAGCTTATCGATTTAGCTTTTCTAAAAATCTGGTGGATTCTCTTACTATTTATCCCTTCCATACCTCCACGTTGTTGGTCATGATTCACTAATAATTTGTTGTTTCAATTATCTCATTTCAATACGATTGAATTTGATTTTTTCTAATTTTTTTAATTTAGATAGAAATAACATTTTTTTCTTGTTTTTTTAAATCAAAATATAAAAAAATCTAACTCATGGTTATAATTTAAATCATATGAAATTTAAATTAATTCTCTTATAAGAACTTTGAAATCATATAACAACCTAACATTATGCAATTATTGAAATATTATTAATATTTTGGTTATTATTATATGTAACTTGCAATAATTTAGTATTAATTTACCAAACACCTGAACCTGTTTTTTCCTCTTTAAAACTAAAATTTACCAAACACTAATTTACTTTGTACTACAGCTGGTTTTCTTTAAAGATTAACTGGCGACAATTATTTTAAAAGCTACAAAAATCCCAAACCAAGCCTTAATATATTCAACAAGATTATTAGATTTGGAAAGATACACTCTCCTTAATTTTTGGATGAAACCAACTAAATATTCTTGAAGGGTAAAATCGAAACTTTGGAAAAAAAATTTGATCACGTGAGTGACACATGTGGCTATTTTTTAACCGATTTTTTTGTCCATCTATCTTAATTGGCTATTTTCATTTTGTTATTTAAAAGGCAATGCTATATTATACATGTAAAAATGGGTTGGCAATTGGCTCGGTATTGGGGCTTGGTACATCAATGAGGAACATAAAAATGTAAATGAGGTATTTGTGTCTCTGTGTGTGTTTAGTTTTGGGTTCGATTTATGGACACAAAATCGAAACAGAATCACACATTTGTAGGAACTCAGGTCCTGGCGTAGTGAAAACGGTTCAGGAACAATTCACAATTTAATTTAGAATCATGAAATACCAATACACTAGCAACATAGATACATTCATAATCTATAGTATATCTAGATTAAACATGCTAAAAAACTATACAATCTAATTCTAATTTACATAAAGTAACAAGTTACTTAATCTCGTTGACGACTCAGATTAATTTCACCAACTGTTTGAGAAATAATCACGAACAACTTGGAACACTTGTTCGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGTAAACTATTGATTGTTCTAAATAAAGCGTCATTTATTGTTATTCTATAAAGAGTTATGAAATTATTAGTTGTTCTGTCTTAAATAATCCTAAATCCAATAAACTAACATCCTAGACTGTTACATGAGTCTTGAACTGTATGTGAAGACATACAGGGATCAGTGTTCAAGATACAGCCTAAAGGTTTATAGTATAGGGATAAGGTTGAGTACCTTATCCTGGTAACACTATGGATATGACCAACTTTGTATTCGATACAAACACAATAATCCAATGCGTTTGTGTAGGGGACACGCGAGTGAGGTATCCTATGCAATGAGTTTCCTTAAGATTGGACCTTGAAATAGTAACCGCTAGATGTAACTCCGCCATTGACTAGTAAGGTTTATATTTCACTAAGATGACCTAAGCAACTTAGTCTCAATCCTGAGTGTATTATGAACTTCTGTTTGCGAGGGATTGTCCTTTGATTTGTATGGGTGAGATTGGCTAGATCGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTAGGTGGATGGGAACATAATCACACAAGATGGAATTTACTCTTTCCCGACTTCAGGGTAAGTAGATGAGTGTTCCCTTATATGGTGTCTCCAGGTCTTGAGCAAAGGGCCCTACCTTCTCAATTGCATGAGAGGGGTTTCTGTTTATTGGTTGGACCTTAAATAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACAGAGGTGGCCCGAGGGTAAAACAGTAATTTGACCCAACTGGTGTTACAAACACTCGTGAAGGACTAACTTTCTGTTATTGGTCTATATCCGTGGACACAGAGATATTCTGCAGTGCGAAGAGTGCAGTTGTGGGTCTATGGTGGAGTGTACCCACAGTTAACGAACATTGATTAATTTGGTTAATGAGTTTAGCCAATTAATCTCATATCGTTTTAGCCAATTAATCTCATATCGTTGGAGCTTCTGATCTGTAGGTCCAATAGGTCCTACTAGTAGCTTGTAAAGGGTAATTAAGGAAATTAAGTCTTAGTGAAATTGAGACTAAGTTGCCTAGGTCATCCTAGTGAAATAGAAACCTTACTAGTCAACGAAGTTACATCTAGCGGTTATTATTTTGCAGTTCGATCTTATGCAAACTCATTGCATAGGATACCCCAGACTTGTGTGTCCCGTACATGAATGTGTTCGATCATTGCGTTTGAATCAAATACAAAGTGAGTACTATCCTTAGTGTTACCAGGATAAGGTACCCAGTTGATAGGACCAATTTGACCCTATTTATTTCGTCTTAATATTGCTAGTTTTATACATAATCATGTGCTTAATCGTATTATTTTATAGGTATTTGGTGTTAAAGCTTCCCGGGAGCACTTTGGAGCAAAAAGTACTTAAAAGGAGAAAATTAGGCCAAGTCCCGAGCATTGGAAGCAAGTTAAAGAAACTAAATAAGCTAGACCCGAGACGCTACCTTCTCAACTTCGATACGCTACAAATTCAAGACCGCGCCTATTTACTGTCAGTGTCGAGACGCTGTCACGATTATTTAAATGCATATTTTTGTCGAATTAGGTCATTTAACAATATTCTCCACCGTTTCACCTCGTTTCAGTCGTCTTCCTCTTCGATTCTTCTCTGTTTTCTGTATTTCTGATGGAAGAGATTGTCGCGGTCTCTTGTCAAATAAATTTATAATCCACAACCTCTAAAGCTAACCTGTAGCAGTAGTGGCTAGGGTCGAACACAGGGAGCACGATTATAACTCGTTTATCTTAGATTTATTGTGATGACTGGACTAATGGGGGGTTTTTTATATTCAGAAAAGAAAATAATTAAGGAAAGAAAACTAATTATGGAAAATAATAGAAAAGAAAAGTAAAGCAGGAAATAGAAAGAATGAAATCATTACCTCCAAGATCATGTAGCCGGGATTGTCATGGTAAGTTCAATTCAATTAAATCATTAATCTCACTAATTAGGCAAAACAAGTTTAAGTCCGACGTACTCCGGCAAGAAACCGAGAGCCATGATCCTACTACCAAAAACATGCAAACACTAAGTTTGATTCTAATTTAAATTAATTAATATGCCTATTAATTAATCTAAATCGCATTGGGATCTAGCCAAATAAATTCACATGCAATGGGCAACAAACCACAATTACAATTGATTAAATCTTTTAGTTCTAGGGACGCATGCGTATAATCATAACGTTAACCTATTTGCTACTAAGATTTAGCAAGTAAATTTAGAGAGGGTGTGGTCAAGGTTGTCAATCATTCCTACCATATTCTAAACTTATAGACAAAGAACTAAAATCACATAAACATGCTTTGAGAATCAAACAAGAGATTTCATTAAGAGAACTTGAACTTACACTTTGATGCCCCGTATTACATGAATGAAGAGTTTAACCTCTCATGGAGCAAGAGCAAGCTGAATTCTTCATGGAATACATCAAGGAAAGCAAGAAAAACTAAAACTATGAAGAATGGTGGAGAAAGGGGAGAGATATGGACTACAATGTTTTAGTGAATTGTGTGTTGAGGGATGATTCTAAACCTACACCAAGGCCCTCTATTTATAGTGATTCTTGGCCTTCAATTCGTGGTCATTTGGTGCTGAATTGGGCCTTTAAACAAGGAAAATTTCCAGCCAAAATAGGAAAAATTTTATTCTGGAAAACTGTCTAGCGTCGCGATGCTGTCCCTTCAGATATGGAAAATTGCTCTCGGATTGCCCTAGTGTCGCGACGCTGTGGGCTAGCGTCGCAACGTTGTTCGCTAGCTTGATCTCCAAGTACTTTCCTTATTTGGTTAGCATCTCGACTCTGATGATGGGCATCTCGATGCTGATGGGGCTCCAAGGGTAGAATGGTTATTTTACTCTCTGATTTTGCTTGTTTAAACCCCAGATTGCTTCCAAAGCTCCGGTGAGGACCTATAGACATATTATACTCATTTTAAAGCATTTTTCGCAAGGAATTCAACTAAGATAAGCAAATTGGGAGATTCTAAGGGGGTGTTTGGGGCACTGAGTTGGTTATAATAGCTGGGGGTTATAATAGTCTAGGGATTATAATAGTTTGGGTGTTATAATAGTCTGTGTTTGGGGTGCAGATTATTATATTCTGGGATAAAATAGTTTGTGTTTGGGGTGCAGATTATTATAGTTTGGGATAAAATAGTCTATGTTTGGGATGCAGATTATTTTAGTCTGGGTTCAAATAGTCTATGTTTCAAGCTGACTGCTTTTTTTCCTTACTTTTTTTTTGTTGATTTTCCTCATACAACTTTGTACTTCAAATATTAATAAAACAAAATTGGGTTTAGTTGTAAAAAAAAATACAGTTTTGGGTATAGGGGTTAAATCATATGTTTAACTTAAAATGAAACAAAAATAATCTAAAGTAAGGGTTGATTTTCTTTGTTTTAGAGTCATGGTTTTTTTTCACAAAATAAGTCATTTTATGATTTCATATAGAAAAACCATATTTGTTTCATTTATGTATTTCCAACATAAAAATGGTATATGCTTATTCAAAACTCATTTTACCTTCATTATCAAAAGAATCAAATAAAATAGAAATCACATAAAATAAAAACTTGAGTAGTAATTTTTTTAAAAATTATTATTATTAGGATAAACTTAAATACGATAAGTATAATTTTGAATGAAAAATATGGTACGATGAAGGTAAACATTCATATACTTCATTATCAAAAGTAATTATATATAATAAAACTCCATATTTATACAAAGACAACCTAGTATCTAACTCCCTAGAAATTTTTCGATTTTTCTAACAACCACCAACAAATTTTTCGGCGACCAAAATTTTTTTCCCTCTTTTTTCCTTTCATTTCTTCTACCTCTTTGCTTTTTTTTTCTTTATTTTTCGAAATGAAAACGAGAAGAAAGATTATTAAAAAAAAAGAAAAAAAGTCATCGGTGATCGTCGAAAAAGTGGCCGGAAAGTCGACGACAGTCGCCGAAAAAGTTGTCGGTGGTCGTCGGAAAAGTCGTTGGCCGGTCGTCGGTAGGAAAGTCAATGAGTCATATGGAAGAAGAGAGAAAAGAGTTACTGTAGAGAATGGATAGAATAGTTAGGTGGGTTGAATAGTGGTTACTGTAGCAACACAGAGGGAAAAATAACCAACTCCACCCATTATTTTTGTTGATGCCCCAAACATTGGGTTGGTTATAATAGCCCCCACTATTATAACCAACATAGTGGGCCAAACGACCCCTAAGTGTATAACAAATTAGACCGATCAATTTCTTTAGTTTAGATTAGTTTTAGAGAGGTTAATCAAGCCTTGGAGCTTGGAATAGGCTCGTCTATGATCGTTTGAGCGCCGTTCACTGTAGTTGGAACCGTGTGGCTATAAGTACATTATGTTTCCATGAGATTCTTGAGTTAAATTGTTGTATTCTTGTGGTTTAATTTTGTTTGTGATTTAGACTATCGTTTCTATTACTAACATACACAATAGGTTAGATTGACGCCCTAACTTGCAGCTTGTATGTTAGTAAACCGCTAAGAAATTGAAATCAACGTAACTAATGGAGTTTTAATTTGTAGTTAGCAATAGGTCGATTCATGGGCACGGGTCCCAAGAACAATTCTCTGACTTTGTTGCTCTACATGATAGGTTTAGGGTCTAAATCGATATTTGTAATTAAATTAGGCTTTTCCTAATTAATTGTGGGTATTATGATAACGCTCATTTATGTGCATTATTTAGCCTTAAAAACCTAGGTAATTGTTTGGAAAGCAATAACTTTGTGTTTAAAATCTTATCATTTCAAGTAAATTTAGCAAAAGTTGTAGATTCATGAGGAAAATCTTAGAAATATATAATTTAAGCTTAAAGTGTACAAAAAGACATTATTTTTTAAGAATTTATCCATGTTAATGTTTTTGTGCAGAGGACTTTGCGAGGAAGATGCACCCGCAAGAGGAGATTAAAGGTTAGTAGAGCAAAAGAAGTAAATTGAAGATTTGCGCCAGCATCTGGACCTAAGGGTGTAAGATATGCGACCAAATGCGCCAACAAACAATATAAGGAAAGTAGCCCCAACTGAAGACAAAATTGTCAAAGCAGCGTACAGATGAAATAAACCCGATATGCGACCGCAACTGGCTTGCCGACAGAATAACTAGATTGTGGGATCTTCACAGAATCGTCCAAAATCTCCAATCTAGTATCAAATCTCTGAAGATTGTGGATTCTTACCTTCCAAGGCCTTTCACACTGATCTCGGCAACCAACCTCACCTTCCAAGGTCTATAAAAGGGACCAAGATGCAAGAAGCAAAGAGAGAGCTTGGAATTTTCGTCCTTATGATAGATTTTACATTTTTCTCTTATCATCTTGTAACCATTCCGAGTTTTGGATCTTCCAGCTTCTGTCGGCTCTTTCATTCGAAAGAAGTAGAAGATAAAGACTTGTCTCCCTTGAAAGATGACAAGAGCAAGCTAGATAGAGAGGGAAAATCCACAGTCATCTTGTTTTACTTTTTGTATTTCTATTTTACATTCTTTATTTCCAGCATTGTTGTTCTTGTTTTCTTTAATTTTCAGTTGTAAGTTAAATTCTTGTACTTGATTCTTTATTTAATATGAATTCAAGTTGTCATTATATGTTGAGTTTTCTTTCTTTTATGTCTTGCACTTTATTTTCAAATATGAGCTAAGCTTCTACTTGGGGGTTCAAATATGTGGATACTTGAGTAGAAGAAAGTCCCACCTATGCAAAAGCAACCTTGCTTCCTCGTAGCATTGTTTGTTCTTGCTGAAATTTAAAGTTTATTGTTAGCTTAAACTAGCCACTTAGGTTAGCATAGTTTGTATTTAGTTGATGGTCGAAAAGTTGGAGTTGAATGCGCAAGTTCGCAAAAACAATAGTGGAAAAAATCCTAGAAATAGGACTTTGTTTTCTTGCATCCTAGAAATAGGACTGGAACCACAGGGTTTTAAGAGTCATGAGCATTATTTATCTAAGTTTCAACTAGCCCTAGAAATAGATGTCTAGTTGGCTTAGTCTTCTAAAGGCACCTACAGTAGAGCTGAATAGAAGTTGGACTTACTCACAATCTAGTTGTCTGGGTAATTGCGGGCACAACTGAGAGATACTATCTGCACCATGTCTACACGGGCAACATAGATAGTGTTTCTCAGTCGACTGTAGAGCCTGAGTAAGCTACTGGTGCAAAAGGTGGGCGCAATCTAATGCTTAAAGTTGATGCTATTTGAATTACCTCGTTTATCTCATAGAGTTTATTTATTTTCATTTACTTTCTTATTTTACTTTCGTCTTAAATAAAAATCATCTTCTAAATATTTCTTTGGTTACCATCTCCGTGGTTGCAAATTTAGAGGAGGTTCCCGTTTTATAGAATCTTGTGTTTACTCAAGTAGTCGCCATCTCCCTTGGGGTACGATATTCAGAATACTTTCCACTTTATTACTTGATAGTGTATATTTGCATTCAAGCAGTGTCATAGTACACGACCGTCAAGGTTTTGGTGTCGTTGCTGGGGAGATTTTGGCAAAACACTTGATTAGCACAGTTTTAGTTTTGTAAAGTAGGAATTGCGATCGGTTTGCGACCGCAAATTCCTCTGTCACATGTCATCAATTCTTCTTTGCAAGGATTTCTTTGCCGATTGGATTGGTTTATGCTCAAAAGACCTGAATTCAATTTTGACCCTGAGATAGAGAAGACTTTCGACAGTGCCGTAAGGAGCAAAGAAGGAAGTTAAAGGAACTACGAGAAGTTCAATAACATGAAACCCAAGAAGAAATTTTTTTGTAGGAAATTGCTATGGAGCCACCTATTGGAGACCCTCTCAGTGCGCAGCAAAGAGGAGCACAACCTAATAATGTGCATCAGCAAGATGTGGCAGCAAATAATCCATATTTATTGCAGATGAAAGGAATAGAGCCATCAGGGATTATGTGGCCGCAACTTTTTACAATCTCAATACAGGAATTGTTGAACCAGTCATTGATGTCAATCATTTTGAGCTCAAGTCAATCACGTTCCAAATGCTTCAGACGATAGGCCAATTTTCAAGACTTCCTAATGAAGATCCTCAAAACACATGAAGCAATTCTTGAGAATATGCAACTCATTCAAGCTCAATGGAGTATCCAATGAAACTTTGCGTTTGAAACTTTTTCCATTTTCTTTACAGGGTAATGCAGAAGCATGGTTATATTCTTTTCTACCGGATAGCATCACCACATGAGATGAGCTTGCTGAAATTTTTCTTTTGAAATATTTTCCGCCCACAAAGTATGCACAAATCCGAGAGGAAATTATTACTTTTAAACAATGACCATAAGAAGAAGTAGACACAACATGGGAACACTTAGAAAAGTTGATAAGGAAATGTCTTCACCATGGTTTGCCCACTTTTCTTATTGTAGAGCACTTTTACAATGGGTTGACTCAAGCTTCCAAAGCAGTAGTCAATGCATCAGCTAATGGTTCATTGCTTAAAAAGACTTTCAATGAGGCAACTGAAATTCTAGACGTTGTTGTTGCAAATCACAGTTACTGGGGAAAAGAAGAAACACCTTCTAGGAGCAGTGTCAAAGTCCAAGAAGTCAATCATCACGAGACACTCCCGAACGGATGTTAA

mRNA sequence

ATGCCTTTACCGCCACGAAAAAATAAGGAAATTGAGGCAGCGACGAGACGTTGTCATCTCGGGATTTTTGGCTTGGACATCTGCTACAGCACCGTCGAGATGCCACCAGCTAGTGTCTCGATGCTATGCTATCAGATCGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTAGGTGGATGGGAACATAATCACACAAGATGGAATTTACTCTTTCCCGACTTCAGGAGATATTCTGCAGTGCGAAGAGTGCAGTTGTGGGTCTATGGTGGAGTGTACCCACAGTATTTGGTGTTAAAGCTTCCCGGGAGCACTTTGGAGCAAAAAGTACTTAAAAGGAGAAAATTAGGCCAAGTCCCGAGCATTGGAAGCAAGTTAAAGAAACTAAATAAGCTAGACCCGAGACGCTACCTTCTCAACTTCGATACGCTACAAATTCAAGACCGCGCCTATTTACTATATGGAAAATTGCTCTCGGATTGCCCTAGTGTCGCGACGCTGTGGGCTAGCGTCGCAACGTTGTTCGCTAGCTTGATCTCCAAGTACTTTCCTTATTTGAGGACTTTGCGAGGAAGATGCACCCGCAAGAGGAGATTAAAGCGTACAGATGAAATAAACCCGATATGCGACCGCAACTGGCTTGCCGACAGAATAACTAGATTGTGGGATCTTCACAGAATCGTCCAAAATCTCCAATCTAGTATCAAATCTCTGAAGATTGTGGATTCTTACCTTCCAAGGCCTTTCACACTGATCTCGGCAACCAACCTCACCTTCCAAGGAATTGCGATCGGTTTGCGACCGCAAATTCCTCTGTCACATGTCATCAATTCTTCTTTGCAAGGATTTCTTTGCCGATTGGATTGGTTTATGCTCAAAAGACCTGAATTCAATTTTGACCCTGAGATAGAGAAGACTTTCGACAGTGCCGAAATTGCTATGGAGCCACCTATTGGAGACCCTCTCAGTGCGCAGCAAAGAGGAGCACAACCTAATAATGTGCATCAGCAAGATGTGGCAGCAAATAATCCATATTTATTGCAGATGAAAGGAATAGAGCCATCAGGGATTATGTGGCCGCAACTTTTTACAATCTCAATACAGGAATTGTTGAACCAGTCATTGATGTCAATCATTTTGAGCTCAAGTCAATCACAGCACTTTTACAATGGGTTGACTCAAGCTTCCAAAGCAGTAGTCAATGCATCAGCTAATGGTTCATTGCTTAAAAAGACTTTCAATGAGGCAACTGAAATTCTAGACGTTGTTGTTGCAAATCACAGTTACTGGGGAAAAGAAGAAACACCTTCTAGGAGCAGTGTCAAAGTCCAAGAAGTCAATCATCACGAGACACTCCCGAACGGATGTTAA

Coding sequence (CDS)

ATGCCTTTACCGCCACGAAAAAATAAGGAAATTGAGGCAGCGACGAGACGTTGTCATCTCGGGATTTTTGGCTTGGACATCTGCTACAGCACCGTCGAGATGCCACCAGCTAGTGTCTCGATGCTATGCTATCAGATCGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTAGGTGGATGGGAACATAATCACACAAGATGGAATTTACTCTTTCCCGACTTCAGGAGATATTCTGCAGTGCGAAGAGTGCAGTTGTGGGTCTATGGTGGAGTGTACCCACAGTATTTGGTGTTAAAGCTTCCCGGGAGCACTTTGGAGCAAAAAGTACTTAAAAGGAGAAAATTAGGCCAAGTCCCGAGCATTGGAAGCAAGTTAAAGAAACTAAATAAGCTAGACCCGAGACGCTACCTTCTCAACTTCGATACGCTACAAATTCAAGACCGCGCCTATTTACTATATGGAAAATTGCTCTCGGATTGCCCTAGTGTCGCGACGCTGTGGGCTAGCGTCGCAACGTTGTTCGCTAGCTTGATCTCCAAGTACTTTCCTTATTTGAGGACTTTGCGAGGAAGATGCACCCGCAAGAGGAGATTAAAGCGTACAGATGAAATAAACCCGATATGCGACCGCAACTGGCTTGCCGACAGAATAACTAGATTGTGGGATCTTCACAGAATCGTCCAAAATCTCCAATCTAGTATCAAATCTCTGAAGATTGTGGATTCTTACCTTCCAAGGCCTTTCACACTGATCTCGGCAACCAACCTCACCTTCCAAGGAATTGCGATCGGTTTGCGACCGCAAATTCCTCTGTCACATGTCATCAATTCTTCTTTGCAAGGATTTCTTTGCCGATTGGATTGGTTTATGCTCAAAAGACCTGAATTCAATTTTGACCCTGAGATAGAGAAGACTTTCGACAGTGCCGAAATTGCTATGGAGCCACCTATTGGAGACCCTCTCAGTGCGCAGCAAAGAGGAGCACAACCTAATAATGTGCATCAGCAAGATGTGGCAGCAAATAATCCATATTTATTGCAGATGAAAGGAATAGAGCCATCAGGGATTATGTGGCCGCAACTTTTTACAATCTCAATACAGGAATTGTTGAACCAGTCATTGATGTCAATCATTTTGAGCTCAAGTCAATCACAGCACTTTTACAATGGGTTGACTCAAGCTTCCAAAGCAGTAGTCAATGCATCAGCTAATGGTTCATTGCTTAAAAAGACTTTCAATGAGGCAACTGAAATTCTAGACGTTGTTGTTGCAAATCACAGTTACTGGGGAAAAGAAGAAACACCTTCTAGGAGCAGTGTCAAAGTCCAAGAAGTCAATCATCACGAGACACTCCCGAACGGATGTTAA

Protein sequence

MPLPPRKNKEIEAATRRCHLGIFGLDICYSTVEMPPASVSMLCYQIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFRRYSAVRRVQLWVYGGVYPQYLVLKLPGSTLEQKVLKRRKLGQVPSIGSKLKKLNKLDPRRYLLNFDTLQIQDRAYLLYGKLLSDCPSVATLWASVATLFASLISKYFPYLRTLRGRCTRKRRLKRTDEINPICDRNWLADRITRLWDLHRIVQNLQSSIKSLKIVDSYLPRPFTLISATNLTFQGIAIGLRPQIPLSHVINSSLQGFLCRLDWFMLKRPEFNFDPEIEKTFDSAEIAMEPPIGDPLSAQQRGAQPNNVHQQDVAANNPYLLQMKGIEPSGIMWPQLFTISIQELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSVKVQEVNHHETLPNGC
Homology
[Close]
BLAST of Lag0018669 vs. NCBI nr
Match: TYK05792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 9.7e-08
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 45  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFRRY 81
           QIVDSI L FWGQDRVG WEHNHTRWN   P FR+Y
Sbjct: 579 QIVDSICLSFWGQDRVGSWEHNHTRWNSRIPTFRKY 614

[Close]
BLAST of Lag0018669 vs. NCBI nr
Match: XP_030505532.1 (uncharacterized protein LOC115720524 [Cannabis sativa])

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-06
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 0 

Query: 373 LNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYW 432
           LN  ++ + + + Q + FYNGL  AS+ V++ASANG++L K++NEA EIL+ + +N+  W
Sbjct: 82  LNPGIVRLEIQAPQMETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQW 141

Query: 433 GKEETPSRSSV 444
               TP+   V
Sbjct: 142 SNTRTPTSRKV 152

[Close]
BLAST of Lag0018669 vs. NCBI nr
Match: XP_024021914.1 (uncharacterized protein LOC112091756 [Morus notabilis])

HSP 1 Score: 62.8 bits (151), Expect = 9.0e-06
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0 

Query: 370 QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANH 429
           +ELL +  +  I    Q + FYNGL + +K +V+ +ANG+LL K++NEA EIL+ +  NH
Sbjct: 101 KELLRKCPLHGIPYWIQMETFYNGLNEPTKVMVDVAANGALLAKSYNEANEILERMATNH 160

Query: 430 SYWGKEETPSRSSVKVQEVN 450
             W  E  P+R ++ V EV+
Sbjct: 161 YQWPTERLPTRKTLGVLEVD 180

[Close]
BLAST of Lag0018669 vs. NCBI nr
Match: XP_024025759.1 (uncharacterized protein LOC112092850 [Morus notabilis])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-05
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0 

Query: 370 QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANH 429
           +ELL +  +  I    Q + FYNGL + ++ +V+A+ANG+LL K++NEA EIL+ +  NH
Sbjct: 101 KELLRKCPLHGIPHWIQMETFYNGLNEPTRVMVDAAANGALLAKSYNEANEILERMATNH 160

Query: 430 SYWGKEETPSRSSVKVQEVN 450
             W  E  P+R +  V EV+
Sbjct: 161 YQWPTERLPTRKTPGVLEVD 180

[Close]
BLAST of Lag0018669 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-05
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 45  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR 79
           QI DS+ L FWGQDRV  WEHNHTRWN L P FR
Sbjct: 467 QIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

[Close]
BLAST of Lag0018669 vs. ExPASy TrEMBL
Match: A0A5D3C3J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002960 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-08
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 45  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFRRY 81
           QIVDSI L FWGQDRVG WEHNHTRWN   P FR+Y
Sbjct: 579 QIVDSICLSFWGQDRVGSWEHNHTRWNSRIPTFRKY 614

[Close]
BLAST of Lag0018669 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-06
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 45  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR 79
           QI DS+ L FWGQDRV  WEHNHTRWN L P FR
Sbjct: 467 QIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

[Close]
BLAST of Lag0018669 vs. ExPASy TrEMBL
Match: W9RRR5 (Retrotrans_gag domain-containing protein OS=Morus notabilis OX=981085 GN=L484_012321 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-05
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 370 QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANH 429
           +ELL +  +  I    Q + FYNGL + ++ +V+A+ANG+LL K++NE  EIL+ +  NH
Sbjct: 41  KELLRKCPLHGIPHWIQMETFYNGLNEQTRVMVDAAANGALLAKSYNEGYEILERMATNH 100

Query: 430 SYWGKEETPSRSSVKVQEVN 450
             W  E  P+R +  V EV+
Sbjct: 101 YQWSPERLPTRKTPGVLEVD 120

[Close]
BLAST of Lag0018669 vs. ExPASy TrEMBL
Match: A0A5A7SPG1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-05
Identity = 32/58 (55.17%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 45  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR-RYSAVRRVQLWVYGGVYPQYLVL 102
           QIVDSI L F GQDR+G WEHN+TRWN L P FR R  AV          V P+Y V+
Sbjct: 106 QIVDSICLSFLGQDRLGSWEHNYTRWNKLLPVFRPRLQAVH---------VEPRYSVI 154

[Close]
BLAST of Lag0018669 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-05
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 386 QSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGK-EETPSRSSVK 445
           Q + FYNGL  A+K VV+ASANG++L KT+NEA EIL+ + +N+  W      P R +  
Sbjct: 212 QMETFYNGLNIATKQVVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRG 271

Query: 446 VQEVN 450
           V EV+
Sbjct: 272 VLEVD 276

The following BLAST results are available for this feature:
BLAST of Lag0018669 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05792.19.7e-0877.78gag/pol protein [Cucumis melo var. makuwa][more]
XP_030505532.15.3e-0640.85uncharacterized protein LOC115720524 [Cannabis sativa][more]
XP_024021914.19.0e-0641.25uncharacterized protein LOC112091756 [Morus notabilis][more]
XP_024025759.11.2e-0541.25uncharacterized protein LOC112092850 [Morus notabilis][more]
KAA0047821.11.2e-0573.53uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa][more]
BLAST of Lag0018669 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0018669 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C3J64.7e-0877.78Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00296... [more]
A0A5A7U2P45.7e-0673.53Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
W9RRR51.7e-0540.00Retrotrans_gag domain-containing protein OS=Morus notabilis OX=981085 GN=L484_01... [more]
A0A5A7SPG13.7e-0555.17Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=... [more]
A0A6J1EEI24.8e-0547.69uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333... [more]
BLAST of Lag0018669 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 438..458

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018669.1Lag0018669.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding