Lag0018662 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018662
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr5: 31999678 .. 32001419 (-)
RNA-Seq ExpressionLag0018662
SyntenyLag0018662
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCACCTTCACTTTCCAAAGGCTAAGTGTCTCCACTCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCATTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAAAAAAAAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCCCTATAAACAAAAAAAAAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCCTCCTCCAAGTGCGAATGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCAAGTTCGAAGGTTCACACACTTCGCTCCAGTTCCTTCTCCCAAATTCGAAGGTTCTCATGCGCTTCGCGCTGCAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCATACGCGCTTCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTTCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCAAAGTTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCGCAGCCCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGTTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGA

mRNA sequence

ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCACCTTCACTTTCCAAAGGCTAAGTGTCTCCACTCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCCTCCTCCAAGTGCGAATGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCAAGTTCGAAGGTTCACACACTTCGCTCCAGTTCCTTCTCCCAAATTCGAAGGTTCTCATGCGCTTCGCGCTGCAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCATACGCGCTTCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTTCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCAAAGTTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCGCAGCCCCTTCCTCCAAGTTCGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGA

Coding sequence (CDS)

ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCACCTTCACTTTCCAAAGGCTAAGTGTCTCCACTCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCCTCCTCCAAGTGCGAATGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCAAGTTCGAAGGTTCACACACTTCGCTCCAGTTCCTTCTCCCAAATTCGAAGGTTCTCATGCGCTTCGCGCTGCAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCATACGCGCTTCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTTCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCAAAGTTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCGCAGCCCCTTCCTCCAAGTTCGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGA

Protein sequence

MSMAATEEENQCSMSTSTHLHFPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVLRCSSFSPSSRVLTLYAIALFLLQVRRFFVVSCCVVPSPSSRVLSCTTATLFLLQVRMILCGALLHCSLFSQVRWFSRSFAGVSSPQVRRFSRLRCSSFFPRSKVLTRCVAVLSPKFEGSHTSLQFLLPNSKVLMRFALQFLPSKFEGSHIASPQFLPPSSKVHTRFATVLLPPSSKVLTRFATVPSSKFKGSHALRCSSFPQVRRFSRRFAAVPFSKFEGSHIASLRAALRCSSFLQVRRFSLASLQFLPPNSKVSKVLKRCDSLQFLPPSSKFLMRFVAPSSKFEGSRSPFLQVRRFATEVLLLQVRSSPLLLFKCLAAVDVLVPLHLQMLAVDGVRFASSSKIDC
Homology
BLAST of Lag0018662 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 5.5e-16
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST      F +     SKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K+HS +PSRMKRK SV INTEGSL V
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTV 187

BLAST of Lag0018662 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 5.5e-16
Identity = 55/96 (57.29%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST T    F +     SKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 402 LSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 461

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K++S +PSR+KRK S+ INTEGSL V
Sbjct: 462 KPFHEENDDDKIYSRVPSRIKRKLSIDINTEGSLTV 497

BLAST of Lag0018662 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 9.3e-16
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST      F +     SKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K+HS +PSRMKRK SV INTEGSL V
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTV 246

BLAST of Lag0018662 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 9.3e-16
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST      F +     SKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K+HS +PSRMKRK SV INTEGSL V
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTV 187

BLAST of Lag0018662 vs. NCBI nr
Match: TYK02147.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-15
Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTST-HLHFPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  S ST +  F +     SKK R STS FDRLK+TNDQ +R+M  L+ 
Sbjct: 151 LSMATKEEENQCPTSISTRNFAFKRLSISTSKKDRPSTSAFDRLKMTNDQQQREMKTLKA 210

Query: 61  KLF-DEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           KLF +E N D K+H+ IPSRMKRK SV I+TEGSL V
Sbjct: 211 KLFLEENNDDDKIHNHIPSRMKRKLSVDISTEGSLTV 247

BLAST of Lag0018662 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-16
Identity = 55/96 (57.29%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST T    F +     SKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 402 LSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 461

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K++S +PSR+KRK S+ INTEGSL V
Sbjct: 462 KPFHEENDDDKIYSRVPSRIKRKLSIDINTEGSLTV 497

BLAST of Lag0018662 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-16
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST      F +     SKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K+HS +PSRMKRK SV INTEGSL V
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTV 187

BLAST of Lag0018662 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-16
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST      F +     SKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K+HS +PSRMKRK SV INTEGSL V
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTV 187

BLAST of Lag0018662 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-16
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST      F +     SKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K+HS +PSRMKRK SV INTEGSL V
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTV 246

BLAST of Lag0018662 vs. ExPASy TrEMBL
Match: A0A5A7VRG7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001010 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-15
Identity = 55/96 (57.29%), Postives = 64/96 (66.67%), Query Frame = 0

Query: 1   MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC M T      F +     S K R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 262 LSMATKEEENQCPMPTYAQTSAFKRLSISTSNKHRPSTSAFDRLKMTNDQQQREMKSLKA 321

Query: 61  KLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV 96
           K F E N D K+HS +PSRMKRK SV INTEGSL V
Sbjct: 322 KPFHEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTV 357

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0036008.15.5e-1658.33Retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050736.15.5e-1657.29retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos... [more]
KAA0044978.19.3e-1658.33retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050734.19.3e-1658.33gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... [more]
TYK02147.12.7e-1558.76retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U9742.6e-1657.29Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7SZJ72.6e-1658.33Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3BBF94.5e-1658.33Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7TQ064.5e-1658.33Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7VRG71.3e-1557.29Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018662.1Lag0018662.1mRNA