Lag0018646 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018646
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal
Location	chr5: 31689440 .. 31694522 (+)
RNA-Seq Expression	Lag0018646
Synteny	Lag0018646

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATTGTGTCTTTGAAGAAGAAATTTCCAGTGAAAGAAATCAAGAAGGAATCGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGTTTGTAACGGTTCTTTCCCTTTTCTTTAGAAAAGCATGAAAATAAATTTAGATTTATTTTTCAGCATGTTTATACCAATTTTCCAGCAACTTTAAAGTATGTTTAAAGTTTATTTGAGTTTTTCGTAACAATATTTTAATGTCAATTAATATACGGCGTAAGGTCCAATCGATGCGCTTCCGTTGCGTAGGGGCTTTTATCCCCTTCAGATTTTTCATAATTGCAGCATTTAAGTTCATTTTTCTTAGTTGTTTCCAATTTGGGGCATTTTTAACGCATTTTGCAGGGGGTATATCTTCTGATTTAGAGGGTTGATTTTTCAATCGACGCATTTGCTGGAGGGGGTTGAATTTTATATGTTTCCCCCTAATAAAGGTATCGATTCTTGAGTTCGTCCCGTGTGTTTTTTCCAGAAAACATTTCTTGAGTACTAAGAAGATGCCACATCTAGATTTTCAAATTAGGTTGGTTCCGAGGATTTTTTGAATTTCAAGTTTCCTAGAATTTCTCTAACTTTTTTAGGTAGGTTGGTTTTTGGATTTTTTGAATTTCAAGCCTCCTAGAATTTCTCTACCTTTTTTAGGTAGGTTGGTTTCTTGGATTTTTTGAATTTCAATCTTCCTAGTTTTTAGGGTATTTTCTCTCTCATAAACTCTGATTTTAAACACCTTAGACAGTTTGTTGGGGGGCATTTTTGTCTTCTGCAAATAGGGATTTATTAATTATAAAATCAATTAGCCATCTATTTAATTTATAAACTTGTGTAGCCATTTTTCAAGTCACCTATTTATGTTTAGCCATTTTTCTTGTTGCCCCAAATGAAAGAGAGCTTCCCTTTCTTTATGGGAATTGGACATAAAAGAGAGATTGATCTGAGCTTAAGGGGTCTCTTTGGACCTGTTTCCATTATGGGCTCTTATCATTTTGACTTTTCTTAGAAGGGGCAACTTGATGAATGACCATTTTTAATTAGGCGTTTTGAAAAATGTCTATCTGATATTTTCATTTGAAAAATGGTCAATTGTTATTTTTAGTAGGTTTTTTTTTACCACGAATCAGATGAAAATGCCCCTAAAGAAAATCTAAATCCAGTGAACTGATAAATTCAAATACAATAGGAGAGAATCTAGGATTTACACTTTAATTTAACACCACATTAAAAATCAATCAAGTTCAAATTAACAAAGATAAATTGGAACAAATAAATAGGAGTTACCTTAATCCTATAAATTAATAACGATTTTTTAAATTGAGAAATATAATAATAATCTCACGTTTTAGGGAGGAGAAATAAGGGTGAATTAAATAAATAAACTATATTCAGAAGCAAAAACTCACCTGGGAAAGCTGCAATTTCAACATCAGTGAGGACTTGAAGCATGTTATTTAATTGAAGCACATCAAATCAATTTAATGGTTTCATCTAAAAAAATTGGAAGCTAGGTGTTTTGGTATTTAAAAAACCTTACCAATTTTTTTGAACAGACTTTTCGACTGCTCCCCTACTCACGCAAGTTTTCAATTCATCTTCTTCTCCCTTAAAACCGATTTCGATTGATTTCTTCTTCGATACCTTGCCATTTTTTTTTATTCTGAATCTATCTCCGATCAACGGCTGTTCACGTTGTATCCTTCTCCAACGACACTATTCCGACACATTTGGGGTGAGAGAAGATTTGAAAAATCCAAGACCTAGAATAGACATTTGAGAGAAAGAACCATGAAGATGATATTTAGATAATTAAAAACTAAAAATCTAATTGAAAACTAAAAATGAAAATATTAAATTATGTTTAATCTTTTGGATTTCAAAATCTGAATTTGAAATTTGATAGGAGGGAAGATAGATGATGTAAATCTACCACATTCCTTGATTCTTCATGGGTGAAACGATTTGAACTTTTTTTTTTAAATTAATAATTAAATCAGATAATGACTCCCTAAAAAATAGGTGTGGATGGAAAACTGACCGAGGGGTATAATTGGAAGAATATTTACGTGTAAATGTTTTAAAAAACAGTTTAGCCACTTTTCACTGAAAATTTTTATTTGGTCATTTTTCAGAAATACAGTGTATATATGGTCATTTATAAGGATTTCCCTTCTTAAAAAGTCTAAATTCACCCATGTTTCAAAAAAAAAAAAAAGTCTAAATTCACCCATAACAAACATATCAATAAAATTGAGATCTCGATATTTTCATCTAAAAAATATTTTGATCCTCCATTTGGATAAATCATTTTATTCACAAGGCCCTTGGTTTGTAGAAGGAACAAATAATTTTGTTTATATTAATTTTAGGAATTCTATCAAGCTACTAGAACAATAGTTTTCCTAAAAAGAAAAAAGAACAATAATATATTTCTAATTTTAGAGAGAGAAATTATCGATCATATAATTTCTAAAATGAAATATGTCAAATATGAAATTATTTTTTATTTGTCTTTTGAACTGATTTGGAGTATTTTTCAAAAAAAAAAAAATAAAAGTTTGGAATATGTGCTTATGATCAAAAGGTCATTGAATTCGAATCTTTCCACCTCCCAATATTGTTGAAGTAGAAAAAAATATATATGTCAAATGAAACTGACCATTTTATTAACATTGTTATGGGTGAATTTGGACCTAGCTCTAAGAAAGACAGGGAAACAAGCCCACAAAGGCCCAAGGGGCCTAAATCAATCTCTAGGGCTACTCACTCTCCTAAAAGGAGAGGGAAAACCCTAATTTCAGCTATAAATAGAAGAGCTTAACCCCAAGGTAGGGGACTCCACTGGTATCTATTTTCTTCCTCCATATTATGACTTTATTTGCTTCGCTTATGATCTCCCAACTGACTTAAGCATCGGAGTCGGTGTGGCAAGCACCACGCCGGTGCTTAGTTTTCTCTTGTTTTGCAGTTGCTTTGCAGGCCACGTCTCCCCATTCAAATAAATTTACCGTTGATGTCACGAGAAGGTCAGGTTAGTCCCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGACTACAAATTTATCAAAATCGATTGGCAAATCCCAAACTCCGACATATTCCACCTTCGCCTCCACCGACCATTGCACCACAACGCCCACTCATCTCTCATCGGCAAGCACTACTGTGCTGGAATTGATCTCGAATCCACCGCTTTGGTGAATCGAACTCAAAATATGCCATCACAACATATATACACATTGAAAAACAGAATTGAAGCTGAAGCCACAAAAAAAAAAGGTGTTGAAGCTGAAGCCGCAAGAAAAAAAAAAGGGAAAAAGGAAAGAGTGCGCCTTGAAGAACGTGAATGGAAATCCATCATCACCCACCATGCAACCTATATTTACTTCACTAAATCCATTTAACAAGTTTTTATTTATTTTTGTTTCTTTTTCTGTGTTTTGACGAATTGTTTCTTTTTTTTTTTTTTTTTTGTGTTTTGCCGTCGCTAAGGTCACCTATGCTCCCCCAAATTTGGTGGCCGCCGCAGACGATTGGATATGTGTGACGAAAATTCGTCTACTATCTTGAATTCATTTGCGATCCATATTCTGTTTCTAAATGGCACGCCACAAAATCCGCTAATTGACGTTGTCGAACGCCAGTTCAAGTTTGAATTTTGCCTCTGCCGCCTGCGAATTCCCATGTTGCCTTTTGGTATGATAATTTTGAACTCTAGGGCTGCAACCTTTATTTTCTTGTTAAGTTATTTAGTATAAATATTTTATAAATATATTTTATGTTTCGTTATTTAAAAGTCCTGTTTTGAAGCAATATCAAGCAATTCTTGAGCATTAATCTTTAGCTATGAAATTGAAATTTGTTTTTTAAACTCAAATACGTTGAATTGGGTTGAAAGATGATTTGAATTGATAGCGATTGCCTTACTCTTTAGCTTAAAATGTTTTTAATCAAGCATTAAGATTGATTTGAAAAATGGATTGAGATAAATCCATGTAGTTTTGAATGCATAATATTAGAAGTGATTTAAATTAAGTTGATTTGTGTTTGGATAAATTATCTATATCCAAAAATTGTAGATTTAAACTTGTATTTGTGCATATATGATTTGATTTGATCTGCTCTCTAATTTATAATTTCAATTAGATATTTTGTTGAATATATTTTGCAGATAATTCATATTTTAAGATTAGATTTATCTAATTTAAAATGGTAGATTTGATGTATCTATCATTTTGGTCATTTATTCAATGAATAAATAGACTGATGGGTCATATTTCAAACCGCGCAATTAAATTTGTTCAGTCCTATCTTATAAAGTTACTTGGACTGAAGAATTGGAATTAATGTAGACTATTGTAAAGCAAGTTAGTTATTTGCTTGCACAGAAATTGTTCTATGGCATCTTCATAAATGTTTGACTGCAAAATATTATGAAGTTTGTTATTTATTTCTAATTCTGAGTTCAACAATATGGAGTGGGAAATTCAAGAGGTCTGAAGATAGCCCATATTAGCCCAGCAAAGACCTTTACCATTTCATAAAGCTTAACATTTTGGGGTATGTTCTCTACCTACCCCAATTTACTATATGTCTATTACTCAATTCGTAATTACGAATTTTGATACATTCTTATTACTTTATGTATATCTATTGATTTATTAAATGCAAATTATTCATAATTTACAAGCTCCTCATGACATACTTATATTTTTTTTATCAATGACTAGTCTTTTCCTCATATCTACATAATGTTATCTACTAACATTATTTCACGAGGAGGAAAAATGGAGCTCCTGAGTAGCTAAGTCAACAAAATGTCATTGGAAGGGTGAAAAAACCTATACTCTCCAAGGCACTCGATTTATGGTACGACCTTAGCAGAGTCGACAAACGTTCGAGAATGATGATGTTGAAGGTCTCAGTGACAACGATAGAGCTGACATGCAAAGAGCTGAGGTTGAGCCGTAG

mRNA sequence

ATGTGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATTGTGTCTTTGAAGAAGAAATTTCCAGTGAAAGAAATCAAGAAGGAATCGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTCAAGTCTACAACGAAGTTGGCGCCGTCTGTGGGGAAGACTACAAATTTATCAAAATCGATTGGCAAATCCCAAACTCCGACATATTCCACCTTCGCCTCCACCGACCATTGCACCACAACGCCCACTCATCTCTCATCGGCAAGCACTACTGTGCTGGAATTGATCTCGAATCCACCGCTTTGAGTCGACAAACGTTCGAGAATGATGATGTTGAAGGTCTCAGTGACAACGATAGAGCTGACATGCAAAGAGCTGAGGTTGAGCCGTAG

Coding sequence (CDS)

ATGTGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATTGTGTCTTTGAAGAAGAAATTTCCAGTGAAAGAAATCAAGAAGGAATCGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTCAAGTCTACAACGAAGTTGGCGCCGTCTGTGGGGAAGACTACAAATTTATCAAAATCGATTGGCAAATCCCAAACTCCGACATATTCCACCTTCGCCTCCACCGACCATTGCACCACAACGCCCACTCATCTCTCATCGGCAAGCACTACTGTGCTGGAATTGATCTCGAATCCACCGCTTTGAGTCGACAAACGTTCGAGAATGATGATGTTGAAGGTCTCAGTGACAACGATAGAGCTGACATGCAAAGAGCTGAGGTTGAGCCGTAG

Protein sequence

MCFRCVGTFIPFNCVFEEEISSERNQEGIAAFSFVGALLAKNGQVYNEVGAVCGEDYKFIKIDWQIPNSDIFHLRLHRPLHHNAHSSLIGKHYCAGIDLESTALSRQTFENDDVEGLSDNDRADMQRAEVEP

Homology

[Close]

BLAST of Lag0018646 vs. NCBI nr
Match: XP_038879593.1 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal isoform X1 [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-07
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 55  EDYKFIKIDWQIPNSDIFHLRLHRPLHHNAHSSLI------------------------- 114
           E YK IKID Q PNS +FHLRLHRP HHNA ++ +                         
Sbjct: 2   EGYKCIKIDRQNPNSGVFHLRLHRPSHHNALTTELFAELRQAFSYLDQNPEVHVIILSGS 61

[Close]

BLAST of Lag0018646 vs. NCBI nr
Match: XP_038879602.1 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal isoform X2 [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-07
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 55  EDYKFIKIDWQIPNSDIFHLRLHRPLHHNAHSSLI------------------------- 114
           E YK IKID Q PNS +FHLRLHRP HHNA ++ +                         
Sbjct: 2   EGYKCIKIDRQNPNSGVFHLRLHRPSHHNALTTELFAELRQAFSYLDQNPEVHVIILSGS 61

[Close]

BLAST of Lag0018646 vs. NCBI nr
Match: XP_022979902.1 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Cucurbita maxima])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 40/82 (48.78%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 55  EDYKFIKIDWQIPNSDIFHLRLHRPLHHN------------AHSSL-------------I 112
           EDYK IKI+ Q PNS +FHLRLHRP H+N            A SSL              
Sbjct: 2   EDYKSIKIERQNPNSGVFHLRLHRPSHYNTLTTELFGELRRALSSLDQNPDVRVIILSGS 61

[Close]

BLAST of Lag0018646 vs. NCBI nr
Match: XP_004152122.1 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Cucumis sativus] >KGN53032.1 hypothetical protein Csa_014540 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 55  EDYKFIKIDWQIPNSDIFHLRLHRPLHHNAHSSLI------------------------- 104
           EDYK IKI+ Q PNS +FHLRLHRP H+NA ++ +                         
Sbjct: 2   EDYKCIKIERQNPNSGVFHLRLHRPSHYNALTTQLFTELRQAFSHLDQNPDVHVIILSGS 61

[Close]

BLAST of Lag0018646 vs. NCBI nr
Match: KAG6582020.1 (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 55  EDYKFIKIDWQIPNSDIFHLRLHRPLHHNAHSSLI------------------------- 104
           EDYK IKI+ Q PNS +FHLRLHRP H+NA ++ +                         
Sbjct: 2   EDYKSIKIERQNPNSGVFHLRLHRPSHYNALTTELFAELRRALSSLDQNPDVRVIILSGS 61

The following BLAST results are available for this feature:

BLAST of Lag0018646 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879593.1	8.9e-07	41.67	delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal isoform X1 [Benincasa h...	[more]
XP_038879602.1	8.9e-07	41.67	delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal isoform X2 [Benincasa h...	[more]
XP_022979902.1	2.0e-06	48.78	delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Cucurbita maxima]	[more]
XP_004152122.1	2.0e-06	45.95	delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Cucumis sativus] >KGN5...	[more]
KAG6582020.1	2.6e-06	45.95	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal, partial [Cucurbita arg...	[more]

BLAST of Lag0018646 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018646.1	Lag0018646.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity