Lag0018641 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018641
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionWD repeat-containing protein 25
Locationchr5: 31411920 .. 31412285 (+)
RNA-Seq ExpressionLag0018641
SyntenyLag0018641
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCTACACTTGTCCATGCGTGAGATGCCACCCCTTTGATCCAGTTTTTATTGCCCAATCGAACGGAGATTATATTGCAATCTTCTCTCTAAACCCACCTTTCAAGTTAGACAAATACAAGAGGTATGAAAGTCATGGAGTCTCAGGCTTTCCAATAAAATGTAACTTCAGCCTGGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTTACGATTATGAATCATCCTTGCCTATACATAAACTAAAAGCATCTGAACAGGCTTGCATAGATGTTGCCATCCACCCGACCTTGCCTAATGTAATTGCTTCCTGCAGCTGGAATGGAAATATTTCACTGTTCCAGTGA

mRNA sequence

ATGGAAGCCTACACTTGTCCATGCGTGAGATGCCACCCCTTTGATCCAGTTTTTATTGCCCAATCGAACGGAGATTATATTGCAATCTTCTCTCTAAACCCACCTTTCAAGTTAGACAAATACAAGAGGTATGAAAGTCATGGAGTCTCAGGCTTTCCAATAAAATGTAACTTCAGCCTGGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTTACGATTATGAATCATCCTTGCCTATACATAAACTAAAAGCATCTGAACAGGCTTGCATAGATGTTGCCATCCACCCGACCTTGCCTAATGTAATTGCTTCCTGCAGCTGGAATGGAAATATTTCACTGTTCCAGTGA

Coding sequence (CDS)

ATGGAAGCCTACACTTGTCCATGCGTGAGATGCCACCCCTTTGATCCAGTTTTTATTGCCCAATCGAACGGAGATTATATTGCAATCTTCTCTCTAAACCCACCTTTCAAGTTAGACAAATACAAGAGGTATGAAAGTCATGGAGTCTCAGGCTTTCCAATAAAATGTAACTTCAGCCTGGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTTACGATTATGAATCATCCTTGCCTATACATAAACTAAAAGCATCTGAACAGGCTTGCATAGATGTTGCCATCCACCCGACCTTGCCTAATGTAATTGCTTCCTGCAGCTGGAATGGAAATATTTCACTGTTCCAGTGA

Protein sequence

MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIASCSWNGNISLFQ
Homology
BLAST of Lag0018641 vs. NCBI nr
Match: XP_016901209.1 (PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 5.2e-62
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0

Query: 1   MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 60
           MEAYTCP VRCHPFDP FIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL
Sbjct: 318 MEAYTCPSVRCHPFDPAFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 377

Query: 61  DAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIASCSWNGNISLF 120
           DAKQIISGSSDGSIYFYDY+SSL IHKLKASEQACID+AIHPTLPNVIASCSWNG IS+F
Sbjct: 378 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 437

Query: 121 Q 122
           Q
Sbjct: 438 Q 438

BLAST of Lag0018641 vs. NCBI nr
Match: XP_022941667.1 (WD repeat-containing protein 25 [Cucurbita moschata])

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 114/121 (94.21%), Postives = 116/121 (95.87%), Query Frame = 0

Query: 1   MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 60
           MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRY SH VSGFPIKCNFSL
Sbjct: 316 MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYGSHVVSGFPIKCNFSL 375

Query: 61  DAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIASCSWNGNISLF 120
           D KQIISGSSDGSIYFYDY+SSL IHKLKASEQAC DVAIHPTLPNVIASCSWNGNIS+F
Sbjct: 376 DGKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACTDVAIHPTLPNVIASCSWNGNISVF 435

Query: 121 Q 122
           Q
Sbjct: 436 Q 436

BLAST of Lag0018641 vs. NCBI nr
Match: KAG6600751.1 (WD repeat-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 114/121 (94.21%), Postives = 116/121 (95.87%), Query Frame = 0

Query: 1   MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 60
           MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRY SH VSGFPIKCNFSL
Sbjct: 316 MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYGSHVVSGFPIKCNFSL 375

Query: 61  DAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIASCSWNGNISLF 120
           D KQIISGSSDGSIYFYDY+SSL IHKLKASEQAC DVAIHPTLPNVIASCSWNGNIS+F
Sbjct: 376 DGKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACTDVAIHPTLPNVIASCSWNGNISVF 435

Query: 121 Q 122
           Q
Sbjct: 436 Q 436

BLAST of Lag0018641 vs. NCBI nr
Match: XP_038903500.1 (WD repeat-containing protein 25 [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-61
Identity = 113/121 (93.39%), Postives = 116/121 (95.87%), Query Frame = 0

Query: 1   MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 60
           MEAYTCP VRCHPFDP FIAQSNG YIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL
Sbjct: 318 MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 377

Query: 61  DAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIASCSWNGNISLF 120
           DAKQIISGSSDGSIYFYDY+SSL IHKLKASEQACID+AIHPTLPNVIASCSWNG IS+F
Sbjct: 378 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 437

Query: 121 Q 122
           Q
Sbjct: 438 Q 438

BLAST of Lag0018641 vs. NCBI nr
Match: XP_023526021.1 (WD repeat-containing protein 25 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 5.8e-61
Identity = 113/121 (93.39%), Postives = 116/121 (95.87%), Query Frame = 0

Query: 1   MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 60
           MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRY SH VSGFPIKCNFSL
Sbjct: 316 MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYGSHVVSGFPIKCNFSL 375

Query: 61  DAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIASCSWNGNISLF 120
           D KQIISGSSDGSIYFYDY+SSL IHKLKASEQAC DVAIHPTLPNVIASCSW+GNIS+F
Sbjct: 376 DGKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACTDVAIHPTLPNVIASCSWSGNISVF 435

Query: 121 Q 122
           Q
Sbjct: 436 Q 436

BLAST of Lag0018641 vs. ExPASy Swiss-Prot
Match: Q64LD2 (WD repeat-containing protein 25 OS=Homo sapiens OX=9606 GN=WDR25 PE=1 SV=3)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-25
Identity = 45/119 (37.82%), Postives = 77/119 (64.71%), Query Frame = 0

Query: 2   EAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLD 61
           E +TCP +  HP +PVF+AQ+NG+Y+A+FS   P+++ + +RYE H V G+ + C  S  
Sbjct: 425 ERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPG 484

Query: 62  AKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIASCSWNGNISLF 121
              +++GS+DG +  Y + ++     L+   QAC+    HP LP+V+A+CSW G++ ++
Sbjct: 485 GDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 543

BLAST of Lag0018641 vs. ExPASy Swiss-Prot
Match: E9Q349 (WD repeat-containing protein 25 OS=Mus musculus OX=10090 GN=Wdr25 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.1e-25
Identity = 45/119 (37.82%), Postives = 76/119 (63.87%), Query Frame = 0

Query: 2   EAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLD 61
           E YTCP +  HP +PVF+AQ+NG+Y+A+FS   P+++ + +RYE H V G+ + C  S  
Sbjct: 416 ERYTCPSLALHPREPVFLAQTNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPC 475

Query: 62  AKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIASCSWNGNISLF 121
              +++GS+DG +  + + ++     L+   QAC+    HP LP+V+ +CSW G+I ++
Sbjct: 476 GDLLVTGSADGRVLMFSFRTASRACTLQGHTQACLGTTYHPVLPSVLGTCSWGGDIKIW 534

BLAST of Lag0018641 vs. ExPASy Swiss-Prot
Match: P40968 (Pre-mRNA-processing factor 17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC40 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-07
Identity = 27/86 (31.40%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 4   YTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAK 63
           ++ P +  HP    F AQS  + I  FSL P +K    K ++ H  +G+ I   FS D +
Sbjct: 337 HSMPFLNVHPSQNYFCAQSMDNRIYSFSLKPKYKRHPKKIFKGHSSAGYGISLAFSGDGR 396

Query: 64  QIISGSSDGSIYFYDYESSLPIHKLK 90
            I SG S   ++ +D+ +S  ++ +K
Sbjct: 397 YICSGDSKSRLFTWDWNTSRLLNNIK 422

BLAST of Lag0018641 vs. ExPASy Swiss-Prot
Match: A8X8C6 (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae OX=6238 GN=tag-125 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 0

Query: 23  NGDYIAIFSLNPPFKLDKY------KRYESHGVSGFPIKCNFSL-DAKQIISGSSDGSIY 82
           NG YI   +L+   KL  +      K+Y+ H  + + I  NFS+   K IISGS D  IY
Sbjct: 259 NGKYILSSNLDNTLKLWDFGKGKTLKQYQGHENNKYCIFANFSVTGGKWIISGSEDCKIY 318

Query: 83  FYDYESSLPIHKLKASEQACIDVAIHPTLPNVIAS 111
            ++ ++   +  L+   QA I    HP + N+IAS
Sbjct: 319 VWNLQTKEVVQSLEGHTQAVIASDCHP-MQNMIAS 352

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016901209.15.2e-6294.21PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo][more]
XP_022941667.11.5e-6194.21WD repeat-containing protein 25 [Cucurbita moschata][more]
KAG6600751.11.5e-6194.21WD repeat-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038903500.13.4e-6193.39WD repeat-containing protein 25 [Benincasa hispida][more]
XP_023526021.15.8e-6193.39WD repeat-containing protein 25 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q64LD21.1e-2537.82WD repeat-containing protein 25 OS=Homo sapiens OX=9606 GN=WDR25 PE=1 SV=3[more]
E9Q3494.1e-2537.82WD repeat-containing protein 25 OS=Mus musculus OX=10090 GN=Wdr25 PE=2 SV=1[more]
P409686.5e-0731.40Pre-mRNA-processing factor 17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ... [more]
A8X8C61.8e-0434.74WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae OX=6238 GN=tag-1... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 81..121
e-value: 0.003
score: 26.8
coord: 39..78
e-value: 1.0
score: 16.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..121
e-value: 9.7E-23
score: 82.6
NoneNo IPR availablePANTHERPTHR44566TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEINcoord: 2..121
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 6..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018641.1Lag0018641.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding