Lag0018633 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018633
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr5: 31246931 .. 31248042 (+)
RNA-Seq Expression	Lag0018633
Synteny	Lag0018633

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAGTCGAGTCTTCGCCTGTTCTGGCATTGTAAGCATATGAAGGAGATTATTTGGTCTGCGGGTTTTGGGGCTATTTTGTCCAAATGCAAGACAGACGATATTAAGTTCCTTCTCCGAGATGTAAAGAATGAGTTGGAGTGGGATCAATTTGAGGAATGGGTGGTGTTATTGTGGGCGATCTGGTATAAACGGAATGAAATGAAGCAGAAAAAGAAGGTCTCAATTACGAATATGACAGATTGGGTGGTCGGGTATCTGAACGCATTCCGTGATTCGGGGAGGAGGGATATGGATCTGTTGGGGGGAAGTCCTACTCGGGCTGTTTGCAGGTGGGCACCGCCAGAGGTTGTTGGGTTCAAGGTGAATGTCGATGCGGCCTTTTGTCTGGAGAGCGGTTCAACAGGGGTAGGCGTGGTATGTCGAGATTCCTGGGAGCAGGTGGGCTTCTCAACTACGGTTTTCCACGAGGATGTCAGAGATGCTGACTTTGCAGAAGGTTTGGTTGTTGCTATCAGTCTGAGACTTACTGTGGAGACGGCTACTCGACCTTTTGTTCTAGATACAGATTCTATGCGGGTGTTCAAGCTGCTGCGGCGTGATGTGGATGAGGTGTCAGAGTTGGGGATGTTGGTGGAGGATGCGGTGAGGGGTGTTCCAGTGGGTGGTTTGTTGGCAGCAGCTTTACGTTCAGGGAAGGCAACCGTGTGGCCCACCATTTGGCAAGGTTGGCAAATGAGGACAAATGTGACCGCGTATGGATGGAAGAAGGTTCTTGATGTGTCTTGGGCTTGTTGGCTGATGATGGAGTGCATGAGTTTCATTAGGCGAGGCGGGAAAGGTGATCAGTCTAAGCAGATCCAACTGTCGTCCCAACCATTATGCCTATTCACAGCGAAGGTTTTCTGTTTCCCTTTCTTTATCCTTATGTTTCGCATGCTTAGATTACTTTCTTGAGGATTTATATGTTTTAGGTTGGGGATGAGAGATGGTGCAGGCTAGTGGGCTGGGGCTTAAGTCTGGATGCACCTGAGCTCCAGGCTAAGTCTTTCTCATGTTATGCTGCTTCTGTTTTGCTCTGCTTGATTGGGTTGAGGCCATGCAGCTGA

mRNA sequence

ATGGGGGAGTCGAGTCTTCGCCTGTTCTGGCATTGTAAGCATATGAAGGAGATTATTTGGTCTGCGGGTTTTGGGGCTATTTTGTCCAAATGCAAGACAGACGATATTAAGTTCCTTCTCCGAGATGTAAAGAATGAGTTGGAGTGGGATCAATTTGAGGAATGGGTGGTGTTATTGTGGGCGATCTGGTATAAACGGAATGAAATGAAGCAGAAAAAGAAGGTCTCAATTACGAATATGACAGATTGGGTGGTCGGGTATCTGAACGCATTCCGTGATTCGGGGAGGAGGGATATGGATCTGTTGGGGGGAAGTCCTACTCGGGCTGTTTGCAGGTGGGCACCGCCAGAGGTTGTTGGGTTCAAGGTGAATGTCGATGCGGCCTTTTGTCTGGAGAGCGGTTCAACAGGGGTAGGCGTGGTATGTCGAGATTCCTGGGAGCAGGTGGGCTTCTCAACTACGGTTTTCCACGAGGATGTCAGAGATGCTGACTTTGCAGAAGGTTTGGTTGTTGCTATCAGTCTGAGACTTACTGTGGAGACGGCTACTCGACCTTTTGTTCTAGATACAGATTCTATGCGGGTGTTCAAGCTGCTGCGGCGTGATGTGGATGAGGTGTCAGAGTTGGGGATGTTGGTGGAGGATGCGGTGAGGGGTGTTCCAGTGGGTGGTTTGTTGGCAGCAGCTTTACGTTCAGGGAAGGCAACCGTGTGGCCCACCATTTGGCAAGGTTGGCAAATGAGGACAAATGTGACCGCGTATGGATGGAAGAAGGTTCTTGATGTGTCTTGGGCTTGTTGGCTGATGATGGAGTGCATGAGTTTCATTAGGCGAGGCGGGAAAGGTGATCAGTCTAAGCAGATCCAACTGTCGTCCCAACCATTATGCCTATTCACAGCGAAGGTTGGGGATGAGAGATGGTGCAGGCTAGTGGGCTGGGGCTTAAGTCTGGATGCACCTGAGCTCCAGGCTAAGTCTTTCTCATGTTATGCTGCTTCTGTTTTGCTCTGCTTGATTGGGTTGAGGCCATGCAGCTGA

Coding sequence (CDS)

ATGGGGGAGTCGAGTCTTCGCCTGTTCTGGCATTGTAAGCATATGAAGGAGATTATTTGGTCTGCGGGTTTTGGGGCTATTTTGTCCAAATGCAAGACAGACGATATTAAGTTCCTTCTCCGAGATGTAAAGAATGAGTTGGAGTGGGATCAATTTGAGGAATGGGTGGTGTTATTGTGGGCGATCTGGTATAAACGGAATGAAATGAAGCAGAAAAAGAAGGTCTCAATTACGAATATGACAGATTGGGTGGTCGGGTATCTGAACGCATTCCGTGATTCGGGGAGGAGGGATATGGATCTGTTGGGGGGAAGTCCTACTCGGGCTGTTTGCAGGTGGGCACCGCCAGAGGTTGTTGGGTTCAAGGTGAATGTCGATGCGGCCTTTTGTCTGGAGAGCGGTTCAACAGGGGTAGGCGTGGTATGTCGAGATTCCTGGGAGCAGGTGGGCTTCTCAACTACGGTTTTCCACGAGGATGTCAGAGATGCTGACTTTGCAGAAGGTTTGGTTGTTGCTATCAGTCTGAGACTTACTGTGGAGACGGCTACTCGACCTTTTGTTCTAGATACAGATTCTATGCGGGTGTTCAAGCTGCTGCGGCGTGATGTGGATGAGGTGTCAGAGTTGGGGATGTTGGTGGAGGATGCGGTGAGGGGTGTTCCAGTGGGTGGTTTGTTGGCAGCAGCTTTACGTTCAGGGAAGGCAACCGTGTGGCCCACCATTTGGCAAGGTTGGCAAATGAGGACAAATGTGACCGCGTATGGATGGAAGAAGGTTCTTGATGTGTCTTGGGCTTGTTGGCTGATGATGGAGTGCATGAGTTTCATTAGGCGAGGCGGGAAAGGTGATCAGTCTAAGCAGATCCAACTGTCGTCCCAACCATTATGCCTATTCACAGCGAAGGTTGGGGATGAGAGATGGTGCAGGCTAGTGGGCTGGGGCTTAAGTCTGGATGCACCTGAGCTCCAGGCTAAGTCTTTCTCATGTTATGCTGCTTCTGTTTTGCTCTGCTTGATTGGGTTGAGGCCATGCAGCTGA

Protein sequence

MGESSLRLFWHCKHMKEIIWSAGFGAILSKCKTDDIKFLLRDVKNELEWDQFEEWVVLLWAIWYKRNEMKQKKKVSITNMTDWVVGYLNAFRDSGRRDMDLLGGSPTRAVCRWAPPEVVGFKVNVDAAFCLESGSTGVGVVCRDSWEQVGFSTTVFHEDVRDADFAEGLVVAISLRLTVETATRPFVLDTDSMRVFKLLRRDVDEVSELGMLVEDAVRGVPVGGLLAAALRSGKATVWPTIWQGWQMRTNVTAYGWKKVLDVSWACWLMMECMSFIRRGGKGDQSKQIQLSSQPLCLFTAKVGDERWCRLVGWGLSLDAPELQAKSFSCYAASVLLCLIGLRPCS

Homology

[Close]

BLAST of Lag0018633 vs. NCBI nr
Match: XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-19
Identity = 68/197 (34.52%), Postives = 95/197 (48.22%), Query Frame = 0


Query: 45  NELEWDQFEEWVVLLWAIWYKRNE--MKQKKKVSITNMTDWVVGYLNAFRDSGR-RDMDL 104
           + ++W   EE  V LWAIW  RN+          + NM DWV  YL  ++ +     + L
Sbjct: 2   DRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPL 61

Query: 105 LGGSPTRAVCRWAPPEVVGFKVNVDAAFCLESGSTGVGVVCRDSWEQVGFSTTVFHEDVR 164
           L       V  W PP    FKVNVDAAF   + S G+ ++ RDS   V  S   F   V 
Sbjct: 62  LLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVS 121

Query: 165 DADFAEGLVVAISLRLTVETATRPFVLDTDSMRVFKLLRRDVDEVSELGML---VEDAVR 224
           D   AE L     + L +E    PF ++TDS +VF LLR D ++ SE+G+L   +   V 
Sbjct: 122 DVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVS 181

Query: 225 GVPVGGLLAAALRSGKA 236
            + +GG  +   R G +
Sbjct: 182 SLHIGGGFSFVNREGNS 198

[Close]

BLAST of Lag0018633 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-18
Identity = 68/212 (32.08%), Postives = 95/212 (44.81%), Query Frame = 0


Query: 6   LRLFWHC---KHMKEIIWSAGFGAILSKCKTDDIKFLLRDVKNELEWDQFEEWVVLLWAI 65
           +R  W C    H   ++W              D+   +R   + + W      VVLLWAI
Sbjct: 1   MRSIWQCSKFSHFLHLLWVP---------VGSDMGHFMRVWTDLVSWQHIGAIVVLLWAI 60

Query: 66  WYKRNEMKQKKKV--SITNMTDWVVGYLNAFRDSGRRDMDLLGGSPTRAVCRWAPPEVVG 125
           W  RN+  Q   +  S++++  W   YL  ++ + R     L       V  W PP    
Sbjct: 61  WNARNQTPQHFSLGGSLSDLVSWSENYLQVYQAAQRSSXSALVVCRPPRVAIWRPPAAPL 120

Query: 126 FKVNVDAAFCLESGSTGVGVVCRDSWEQVGFSTTVFHEDVRDADFAEGLVVAISLRLTVE 185
            KVNVDAAF  ES   GVGV+ RDS   V  +         D D+ EG  V   + L VE
Sbjct: 121 LKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVYEGILLAVE 180

Query: 186 TATRPFVLDTDSMRVFKLLRRDVDEVSELGML 213
                F ++TDS+R+F LL  D  + SE+G+L
Sbjct: 181 AGFIRFQIETDSLRIFNLLTTDCVDDSEVGVL 203

[Close]

BLAST of Lag0018633 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 3.8e-17
Identity = 61/189 (32.28%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 39  LLRDVKNELEWDQFEEWVVLLWAIWYKRNE-MKQKKKVSITNMTDWVVGYLNAFR----D 98
           +LRD ++ L W  FEE VV LW++W +RN  +  K++V   ++  WV  Y+  F+    +
Sbjct: 4   ILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTN 63

Query: 99  SGRRDMDLLGGSPTRAVCR-------WAPPEVVGFKVNVDAAFCLESGSTGVGV-VCRDS 158
               + D+       +          W P E   FK+  DA+F     + G+GV + RD 
Sbjct: 64  HATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDH 123

Query: 159 WEQVGFSTTVFHEDVRDADFAEGLVVAISLRLTVETATRPFVLDTDSMRVFKLLRRDVDE 215
             QV  S T + E V   D AE L     LR+ +ET   P +L+TDS+R++ L  RD + 
Sbjct: 124 RGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEG 183

[Close]

BLAST of Lag0018633 vs. NCBI nr
Match: XP_024172006.1 (uncharacterized protein LOC112178017 [Rosa chinensis])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-13
Identity = 58/225 (25.78%), Postives = 103/225 (45.78%), Query Frame = 0


Query: 3   ESSLRLFWHCKHMKEIIWSAGFGAILSKCKTDDIKFLLRDVKNELEWDQFEEWVVLLWAI 62
           E SL LF +C  ++     +       K  +  +     D+ + L  ++ E +++ LW +
Sbjct: 710 EDSLHLFKNCDALRTFWMHSSLELQPGKHPSIVLDVWFWDMVDALNGEKLEYFLMALWVV 769

Query: 63  WYKRNEMKQKKKVS-ITNMTDWVVGYLNAFRDSGRRDMDLLGGSPTRAVCRWAPPEVVGF 122
           W +RN +  K  VS  TNM  W   +L+ ++   +R     GG   R++ +W  P     
Sbjct: 770 WMERNNIVWKASVSNPTNMHAWAKSFLHEYKQLHKRQ----GGKAKRSLIKWTCPPRGRL 829

Query: 123 KVNVDAAFCLESGSTGVGVVCRDSWEQVGFSTTVFHEDVRDADFA------EGLVVAISL 182
           K+N+D +FC E+G  GVGVV R+      F  T      R   FA      E   +   L
Sbjct: 830 KINIDGSFCTETGGGGVGVVVRN------FEGTCIATFARPFHFAQSDIHMEAEALRAGL 889

Query: 183 RLTVETATRPFVLDTDSMRVFKLLRRDVDEVSELGMLVEDAVRGV 221
            + ++   +  ++++D + +   LR   D+ S +G +++D  R V
Sbjct: 890 LIAIQQDWKEIIVESDCVNLVSALRATDDDFSSIGRILDDCRREV 924

[Close]

BLAST of Lag0018633 vs. NCBI nr
Match: XP_024195790.1 (uncharacterized protein LOC112198938 [Rosa chinensis])

HSP 1 Score: 86.7 bits (213), Expect = 4.4e-13
Identity = 56/223 (25.11%), Postives = 103/223 (46.19%), Query Frame = 0


Query: 3    ESSLRLFWHCKHMKEIIWSAGFGAILSKCKTDDIKFLLRDVKNELEWDQFEEWVVLLWAI 62
            E SL LF +C  ++     +       K  +  +      + + L  ++ E +++ LW +
Sbjct: 935  EDSLHLFKNCDALRTFWMHSSLELQPGKHPSIVLDVWFWYMVDALNGEKLEYFLMALWVV 994

Query: 63   WYKRNEMKQKKKVS-ITNMTDWVVGYLNAFRDSGRRDMDLLGGSPTRAVCRWAPPEVVGF 122
            W +RN +  K  VS  TNM  W   +L+ ++   +R     GG   R++ +W  P     
Sbjct: 995  WMERNNIVWKASVSNPTNMHAWAKSFLHEYKQLHKRQ----GGKAKRSLIKWTCPPRGRL 1054

Query: 123  KVNVDAAFCLESGSTGVGVVCRDSWEQVGFSTTVFHEDVRDADFAEGLV------VAISL 182
            K+N+D +FC E+G  GVGVV R+      F  T     VR   FA+  +      +   L
Sbjct: 1055 KINIDGSFCTETGGGGVGVVVRN------FEGTCMATFVRPFHFAQSAIHMEAEALRAGL 1114

Query: 183  RLTVETATRPFVLDTDSMRVFKLLRRDVDEVSELGMLVEDAVR 219
             + ++   +  ++++D + +   LR   D+ S +G +++D  R
Sbjct: 1115 LIAIQQDWKEIIVESDCVNLVSALRATDDDFSSIGRILDDCRR 1147

[Close]

BLAST of Lag0018633 vs. ExPASy TrEMBL
Match: A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-19
Identity = 68/197 (34.52%), Postives = 95/197 (48.22%), Query Frame = 0


Query: 45  NELEWDQFEEWVVLLWAIWYKRNE--MKQKKKVSITNMTDWVVGYLNAFRDSGR-RDMDL 104
           + ++W   EE  V LWAIW  RN+          + NM DWV  YL  ++ +     + L
Sbjct: 2   DRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPL 61

Query: 105 LGGSPTRAVCRWAPPEVVGFKVNVDAAFCLESGSTGVGVVCRDSWEQVGFSTTVFHEDVR 164
           L       V  W PP    FKVNVDAAF   + S G+ ++ RDS   V  S   F   V 
Sbjct: 62  LLDGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVS 121

Query: 165 DADFAEGLVVAISLRLTVETATRPFVLDTDSMRVFKLLRRDVDEVSELGML---VEDAVR 224
           D   AE L     + L +E    PF ++TDS +VF LLR D ++ SE+G+L   +   V 
Sbjct: 122 DVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVS 181

Query: 225 GVPVGGLLAAALRSGKA 236
            + +GG  +   R G +
Sbjct: 182 SLHIGGGFSFVNREGNS 198

[Close]

BLAST of Lag0018633 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-18
Identity = 68/212 (32.08%), Postives = 95/212 (44.81%), Query Frame = 0


Query: 6   LRLFWHC---KHMKEIIWSAGFGAILSKCKTDDIKFLLRDVKNELEWDQFEEWVVLLWAI 65
           +R  W C    H   ++W              D+   +R   + + W      VVLLWAI
Sbjct: 1   MRSIWQCSKFSHFLHLLWVP---------VGSDMGHFMRVWTDLVSWQHIGAIVVLLWAI 60

Query: 66  WYKRNEMKQKKKV--SITNMTDWVVGYLNAFRDSGRRDMDLLGGSPTRAVCRWAPPEVVG 125
           W  RN+  Q   +  S++++  W   YL  ++ + R     L       V  W PP    
Sbjct: 61  WNARNQTPQHFSLGGSLSDLVSWSENYLQVYQAAQRSSXSALVVCRPPRVAIWRPPAAPL 120

Query: 126 FKVNVDAAFCLESGSTGVGVVCRDSWEQVGFSTTVFHEDVRDADFAEGLVVAISLRLTVE 185
            KVNVDAAF  ES   GVGV+ RDS   V  +         D D+ EG  V   + L VE
Sbjct: 121 LKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVYEGILLAVE 180

Query: 186 TATRPFVLDTDSMRVFKLLRRDVDEVSELGML 213
                F ++TDS+R+F LL  D  + SE+G+L
Sbjct: 181 AGFIRFQIETDSLRIFNLLTTDCVDDSEVGVL 203

[Close]

BLAST of Lag0018633 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-17
Identity = 61/189 (32.28%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 39  LLRDVKNELEWDQFEEWVVLLWAIWYKRNE-MKQKKKVSITNMTDWVVGYLNAFR----D 98
           +LRD ++ L W  FEE VV LW++W +RN  +  K++V   ++  WV  Y+  F+    +
Sbjct: 4   ILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTN 63

Query: 99  SGRRDMDLLGGSPTRAVCR-------WAPPEVVGFKVNVDAAFCLESGSTGVGV-VCRDS 158
               + D+       +          W P E   FK+  DA+F     + G+GV + RD 
Sbjct: 64  HATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDH 123

Query: 159 WEQVGFSTTVFHEDVRDADFAEGLVVAISLRLTVETATRPFVLDTDSMRVFKLLRRDVDE 215
             QV  S T + E V   D AE L     LR+ +ET   P +L+TDS+R++ L  RD + 
Sbjct: 124 RGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEG 183

[Close]

BLAST of Lag0018633 vs. ExPASy TrEMBL
Match: A0A803P3X4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-13
Identity = 63/228 (27.63%), Postives = 107/228 (46.93%), Query Frame = 0


Query: 3    ESSLRLFWHCKHMKEIIWSAGFGAILSKCKTDDIKFLLRDVKNELEWDQFEEWVVLLWAI 62
            E      W C+  +E+  S GF   + +  ++D+   L  +   L  ++FE ++VL W +
Sbjct: 1514 EDVFHAIWCCRVNREVWKSTGFYGKIQRQGSEDVLAFLMRISTILSKEEFEFFLVLSWNL 1573

Query: 63   WYKRNEMKQ-KKKVSITNMTDWVVGYLNAFRDSGRRDMDLLGGSPTRAVCRWAPPEVVGF 122
            WY RN +     K     + +W   +L+ FR+S     D       R   RW PP +  F
Sbjct: 1574 WYVRNSVNHGGHKPQACAILEWCSKFLSEFRESNTPKRD----RQVREAARWTPPGIDAF 1633

Query: 123  KVNVDAAFCLESGSTGVGVVCRDSWEQV-GFSTTVFHEDVRDADFAEGLVVAISLRLTVE 182
            K+NVDA    E+G   +  V RD    V   + TV  +++     AE   +A  L+  ++
Sbjct: 1634 KINVDAGVRTEAGVASISSVVRDHAGMVHSAAATVLLQNMTPL-HAELQAIARGLQAGIQ 1693

Query: 183  TATRPFVLDTDSMRVFKLLR------RDVDE-VSELGMLVEDA-VRGV 221
                 F +++D ++   L++      RDVDE V+ +  L+++  VRGV
Sbjct: 1694 CNLPAFNVESDCLQAVTLVQRKEEGCRDVDEIVAHIRSLLQNVRVRGV 1736

[Close]

BLAST of Lag0018633 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-12
Identity = 51/194 (26.29%), Postives = 87/194 (44.85%), Query Frame = 0


Query: 2    GESSLRLFWHCKHMKEIIWSAGFGAILSKCKTDDIKFLLRDVKNELEWDQFEEWVVLLWA 61
            GE S+ LFW CK  + +  ++ FG +           +LR+    L    FEE  V++W 
Sbjct: 884  GEDSIHLFWICKFAEALWINSKFGKL-------SPFLILRESHESLSKADFEELCVVIWG 943

Query: 62   IWYKRN------EMKQKKKVSITNMTDWVVGYLNAFRDSGRRDMDLLGGSPTRAVCRWAP 121
            +W +RN        K   K+ +  + +W   Y   FR++  +   + G     A   W P
Sbjct: 944  LWNQRNARAFNDSTKTVFKIGM-ELVEWANKYAMEFREA--KSNPITGRVTNTAEILWQP 1003

Query: 122  PEVVGFKVNVDAAFCLESGSTGVGVVCRDSWEQVGFSTTVFHEDVRDADFAEGLVVAISL 181
            P+   +K+N DA+F       G+G++  +   QV  + T + E+++  D AE +     L
Sbjct: 1004 PDEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGL 1063

Query: 182  RLTVETATRPFVLD 190
            +L  E    P + D
Sbjct: 1064 QLASEIGMHPALED 1067

The following BLAST results are available for this feature:

BLAST of Lag0018633 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135942.1	3.1e-19	34.52	uncharacterized protein LOC111007775 [Momordica charantia]	[more]
XP_022150944.1	4.5e-18	32.08	uncharacterized protein LOC111018973 [Momordica charantia]	[more]
XP_022139684.1	3.8e-17	32.28	uncharacterized protein LOC111010533 [Momordica charantia]	[more]
XP_024172006.1	1.2e-13	25.78	uncharacterized protein LOC112178017 [Rosa chinensis]	[more]
XP_024195790.1	4.4e-13	25.11	uncharacterized protein LOC112198938 [Rosa chinensis]	[more]

BLAST of Lag0018633 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0018633 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C467	1.5e-19	34.52	uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1DBJ7	2.2e-18	32.08	uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CDQ4	1.9e-17	32.28	uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A803P3X4	3.6e-13	27.63	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J1DAR4	1.8e-12	26.29	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Lag0018633 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 124..216 e-value: 2.4E-6 score: 27.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018633.1	Lag0018633.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity