Lag0018626 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018626
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr5: 31136864 .. 31137361 (+)
RNA-Seq ExpressionLag0018626
SyntenyLag0018626
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTCTTGAGAGGAGTACATCTGATGTTCAAACTGTATTACAACCATCAAAAGTCATAAACCCATGGAACAAGATCGCAATTGTGAAGTTCGATGAAGAGAATTTTCTTTTATGGAAAATACAAGTTTTAATCACACTGAGGGGTCATGGTTTGCAACAGCACATTGATACAGATGTAGAAGTACCAGTGAAATATCTGAATACAGGTGATACCTCTTCTTCAAATCGAGCAGTTAACCCTGAATATGATCACTGGATTAGGCAAGATAACCTGATTACTGCGTGGTTTTTAGGTTCGAAGTCTAATTCCTTACTGTCAGAAGTTGTAGATTGTGAAATTGCAAGAGAAGTCTGGAAAACACTCAATGATAAGTTTTTTTCTCGAAATCTTGCCAGAGTAATGGATCTGAAAACAAAATTGGAGACAATGAAGAAAGGAAATTTAAAGCTTGAAGAATATTTCTTGAAGATTAAAATCTTGTTGATTCTTTAA

mRNA sequence

ATGGAGTCTCTTGAGAGGAGTACATCTGATGTTCAAACTGTATTACAACCATCAAAAGTCATAAACCCATGGAACAAGATCGCAATTGTGAAGTTCGATGAAGAGAATTTTCTTTTATGGAAAATACAAGTTTTAATCACACTGAGGGGTCATGGTTTGCAACAGCACATTGATACAGATGTAGAAGTACCAGTGAAATATCTGAATACAGGTGATACCTCTTCTTCAAATCGAGCAGTTAACCCTGAATATGATCACTGGATTAGGCAAGATAACCTGATTACTGCGTGGTTTTTAGGTTCGAAGTCTAATTCCTTACTGTCAGAAGTTGTAGATTGTGAAATTGCAAGAGAAGTCTGGAAAACACTCAATGATAAGTTTTTTTCTCGAAATCTTGCCAGAGTAATGGATCTGAAAACAAAATTGGAGACAATGAAGAAAGGAAATTTAAAGCTTGAAGAATATTTCTTGAAGATTAAAATCTTGTTGATTCTTTAA

Coding sequence (CDS)

ATGGAGTCTCTTGAGAGGAGTACATCTGATGTTCAAACTGTATTACAACCATCAAAAGTCATAAACCCATGGAACAAGATCGCAATTGTGAAGTTCGATGAAGAGAATTTTCTTTTATGGAAAATACAAGTTTTAATCACACTGAGGGGTCATGGTTTGCAACAGCACATTGATACAGATGTAGAAGTACCAGTGAAATATCTGAATACAGGTGATACCTCTTCTTCAAATCGAGCAGTTAACCCTGAATATGATCACTGGATTAGGCAAGATAACCTGATTACTGCGTGGTTTTTAGGTTCGAAGTCTAATTCCTTACTGTCAGAAGTTGTAGATTGTGAAATTGCAAGAGAAGTCTGGAAAACACTCAATGATAAGTTTTTTTCTCGAAATCTTGCCAGAGTAATGGATCTGAAAACAAAATTGGAGACAATGAAGAAAGGAAATTTAAAGCTTGAAGAATATTTCTTGAAGATTAAAATCTTGTTGATTCTTTAA

Protein sequence

MESLERSTSDVQTVLQPSKVINPWNKIAIVKFDEENFLLWKIQVLITLRGHGLQQHIDTDVEVPVKYLNTGDTSSSNRAVNPEYDHWIRQDNLITAWFLGSKSNSLLSEVVDCEIAREVWKTLNDKFFSRNLARVMDLKTKLETMKKGNLKLEEYFLKIKILLIL
Homology
BLAST of Lag0018626 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 2.3e-36
Identity = 77/157 (49.04%), Postives = 112/157 (71.34%), Query Frame = 0

Query: 9   SDVQTVLQPSKVINPWNKIAIVKFDEENFLLWKIQVLITLRGHGLQQHIDTDVEVPVKYL 68
           SD   ++Q SK INP +K++IV+ +++N LLWK Q+   L+G+GL+ +ID++ + P +++
Sbjct: 10  SDAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFV 69

Query: 69  NT--GDTSSSNRAVNPEYDHWIRQDNLITAWFLGSKSNSLLSEVVDCEIAREVWKTLNDK 128
            T   ++SSS+   NP Y  WI+QD LI+AW LGS +  +LS+++DC+ ARE+W  L   
Sbjct: 70  QTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECM 129

Query: 129 FFSRNLARVMDLKTKLETMKKGNLKLEEYFLKIKILL 164
           F SR LARVM LK KLE  KKGNL L++YFLKIK L+
Sbjct: 130 FASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLV 166

BLAST of Lag0018626 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-31
Identity = 68/125 (54.40%), Postives = 93/125 (74.40%), Query Frame = 0

Query: 41  KIQVLITLRGHGLQQHIDTDVEVPVKYLNTGD--TSSSNRAVNPEYDHWIRQDNLITAWF 100
           K QVL  ++GHGL+Q+ID+D+E P +++  GD  TSS+ +  NPEY HWI+QD LI+ W 
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78

Query: 101 LGSKSNSLLSEVVDCEIAREVWKTLNDKFFSRNLARVMDLKTKLETMKKGNLKLEEYFLK 160
           LGS S  +LS+++DC + +E+W  L   F SRNLARVM LK+KLE MKKG++ L+ YFLK
Sbjct: 79  LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138

Query: 161 IKILL 164
           IK L+
Sbjct: 139 IKNLV 143

BLAST of Lag0018626 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-27
Identity = 65/138 (47.10%), Postives = 94/138 (68.12%), Query Frame = 0

Query: 25  NKIAIVKFDEENFLLWKIQVLITLRGHGLQQHIDTDVEVPVKYL-NTGDTS-SSNRAVNP 84
           NKI++VK  ++NFLLWK Q+L  L  + L+   ++++E P KYL +TG +S S+ R  NP
Sbjct: 22  NKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSKYLTSTGSSSTSATRTPNP 81

Query: 85  EYDHWIRQDNLITAWFLGSKSNSLLSEVVDCEIAREVWKTLNDKFFSRNLARVMDLKTKL 144
           EY  W R + LI+ W LGS S  +L+++V C+ A+E+W TL   F SR LA+ M  K KL
Sbjct: 82  EYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKL 141

Query: 145 ETMKKGNLKLEEYFLKIK 161
             +KKG++ L+EYFLKI+
Sbjct: 142 HNIKKGSMSLKEYFLKIQ 159

BLAST of Lag0018626 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 7.5e-27
Identity = 64/145 (44.14%), Postives = 97/145 (66.90%), Query Frame = 0

Query: 18  SKVINPWNKIAIVKFDEENFLLWKIQVLITLRGHGLQQHIDTDVEVPVKYL-NTGDTS-S 77
           +++    NKI++VK  ++NFLLWK Q+L  L  + L+  ++++ E P KYL +TG +S S
Sbjct: 20  NQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSAS 79

Query: 78  SNRAVNPEYDHWIRQDNLITAWFLGSKSNSLLSEVVDCEIAREVWKTLNDKFFSRNLARV 137
           + R  NP Y  W RQD LI++W LGS S  +L++++ C+ A+E+W TL   F SR LA+ 
Sbjct: 80  ATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQA 139

Query: 138 MDLKTKLETMKKGNLKLEEYFLKIK 161
           M  K KL  +KK ++ L+EYFLKI+
Sbjct: 140 MKFKNKLHNIKKESMPLKEYFLKIQ 164

BLAST of Lag0018626 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 7.5e-27
Identity = 61/144 (42.36%), Postives = 97/144 (67.36%), Query Frame = 0

Query: 18  SKVINPWNKIAIVKFDEENFLLWKIQVLITLRGHGLQQHIDTDVEVPVKYLNTGDTSSSN 77
           +++    NKI++VK +++ FLLWK Q+L  L  + L+  ++++ E P KYL + ++SS++
Sbjct: 20  NQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESSSAS 79

Query: 78  R--AVNPEYDHWIRQDNLITAWFLGSKSNSLLSEVVDCEIAREVWKTLNDKFFSRNLARV 137
                NP Y  W RQD LI++W LGS S  +L++++ C+ A+E+W+TL   F SR LA+ 
Sbjct: 80  ATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQA 139

Query: 138 MDLKTKLETMKKGNLKLEEYFLKI 160
           M  K KL  +KKG++ L+EYFLKI
Sbjct: 140 MQFKNKLHNIKKGSMPLKEYFLKI 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154487.12.3e-3649.04uncharacterized protein LOC111021757 [Momordica charantia][more]
XP_022156747.12.9e-3154.40uncharacterized protein LOC111023586 [Momordica charantia][more]
KAA0053143.11.1e-2747.10keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
KAA0067213.17.5e-2744.14keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
KAA0048297.17.5e-2742.36Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 95..162
e-value: 1.9E-5
score: 24.9
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 31..161
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 31..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018626.1Lag0018626.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding