Lag0018542 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018542
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionF-box/LRR-repeat protein 4
Locationchr5: 29262734 .. 29263399 (-)
RNA-Seq ExpressionLag0018542
SyntenyLag0018542
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCCCCTCGCCGGATCTTCACTCCCTTTCAATTCTCTCCGCCGACTGCTCCGCCTTGCCAACCGCCACTCTCTCCGCCCAAATCATCCCCCAAATCCACCTTTTCTGTACGAATCTTCGGGCTCTGAGATTCCTCGCTGGACCTGTTTCTCTCTCCTCAGGATGTACCCACCTCACTTCTCTCTGTATCGACATATGCCGGCCGTTGAATTTCCGGTGGGTTGTTAATTTTCCGGCTCTGAAATCGTTGTCGATTTATGTTGGCTCCGGCGATGGTTTTGAAATTGAGTTGAATTTCGGCGATTGGGAGAGGGAATCGGTGGAATTAGGGATCGAGAGCCTCTGTTTGTCCGGCCTCTGGGCCGGCGATTGGGGCGCCGGTTGGTTGTGGCGGAGCTGCAAGAATCTCCGGCAGTTGGAGCTTCGCAGCTGCTAGACCGTCGGTGACGGCGGGTCGTTTTCATCGTTCGTAGAGTGCTTGCCGGGACTGTGCGAGGTGGAGCTGCGAACTTGCCGGAGCATCGCCGACGGCGTTCTGATGAAATTGTCGGAGAATTGTCAAAGTCTTATCTCTATTCGTGCTATTCGGGTCGCCGGCGGGAGAAAAAGAGAGAAGAGATGGGGGATGAGGGGCGGCGGAGAGAAGAAGGGAGGGAAGTGA

mRNA sequence

ATGTCTCTCCCCTCGCCGGATCTTCACTCCCTTTCAATTCTCTCCGCCGACTGCTCCGCCTTGCCAACCGCCACTCTCTCCGCCCAAATCATCCCCCAAATCCACCTTTTCTGTACGAATCTTCGGGCTCTGAGATTCCTCGCTGGACCTGTTTCTCTCTCCTCAGGATGTACCCACCTCACTTCTCTCTGTATCGACATATGCCGGCCGTTGAATTTCCGGTGGGTTGTTAATTTTCCGGCTCTGAAATCGTTGTCGATTTATGTTGGCTCCGGCGATGGTTTTGAAATTGAGTTGAATTTCGGCGATTGGGAGAGGGAATCGGTGGAATTAGGGATCGAGAGCCTCTGTTTGTCCGGCCTCTGGGCCGGCGATTGGGGCGCCGAGTGCTTGCCGGGACTGTGCGAGGTGGAGCTGCGAACTTGCCGGAGCATCGCCGACGGCGTTCTGATGAAATTGTCGGAGAATTGTCAAAGTCTTATCTCTATTCGTGCTATTCGGGTCGCCGGCGGGAGAAAAAGAGAGAAGAGATGGGGGATGAGGGGCGGCGGAGAGAAGAAGGGAGGGAAGTGA

Coding sequence (CDS)

ATGTCTCTCCCCTCGCCGGATCTTCACTCCCTTTCAATTCTCTCCGCCGACTGCTCCGCCTTGCCAACCGCCACTCTCTCCGCCCAAATCATCCCCCAAATCCACCTTTTCTGTACGAATCTTCGGGCTCTGAGATTCCTCGCTGGACCTGTTTCTCTCTCCTCAGGATGTACCCACCTCACTTCTCTCTGTATCGACATATGCCGGCCGTTGAATTTCCGGTGGGTTGTTAATTTTCCGGCTCTGAAATCGTTGTCGATTTATGTTGGCTCCGGCGATGGTTTTGAAATTGAGTTGAATTTCGGCGATTGGGAGAGGGAATCGGTGGAATTAGGGATCGAGAGCCTCTGTTTGTCCGGCCTCTGGGCCGGCGATTGGGGCGCCGAGTGCTTGCCGGGACTGTGCGAGGTGGAGCTGCGAACTTGCCGGAGCATCGCCGACGGCGTTCTGATGAAATTGTCGGAGAATTGTCAAAGTCTTATCTCTATTCGTGCTATTCGGGTCGCCGGCGGGAGAAAAAGAGAGAAGAGATGGGGGATGAGGGGCGGCGGAGAGAAGAAGGGAGGGAAGTGA

Protein sequence

MSLPSPDLHSLSILSADCSALPTATLSAQIIPQIHLFCTNLRALRFLAGPVSLSSGCTHLTSLCIDICRPLNFRWVVNFPALKSLSIYVGSGDGFEIELNFGDWERESVELGIESLCLSGLWAGDWGAECLPGLCEVELRTCRSIADGVLMKLSENCQSLISIRAIRVAGGRKREKRWGMRGGGEKKGGK
Homology
BLAST of Lag0018542 vs. NCBI nr
Match: XP_038906121.1 (F-box/LRR-repeat protein 4 [Benincasa hispida])

HSP 1 Score: 219.2 bits (557), Expect = 3.1e-53
Identity = 123/199 (61.81%), Postives = 136/199 (68.34%), Query Frame = 0

Query: 6   PDLHSLSILSADCSALPTATLSAQIIPQIHLFCTNLRALRFLAGP------VSLSSGCTH 65
           P L SLSILSAD SA P AT SA+I+ +I  FCTNL+ALRFLAGP      VSLSS CTH
Sbjct: 63  PFLSSLSILSADSSATPVATPSAEILSEIRRFCTNLKALRFLAGPVSLSSLVSLSSACTH 122

Query: 66  LTSLCIDICRPLNFRWVVNFPALKSLSIYVGSGDGFEIELNFGDWERES----VELGIES 125
           L SL I+I RPLNFRWVVNFP LK LS+ V SG+GFEIE+N GDWE ES    VELGI+S
Sbjct: 123 LASLSINIYRPLNFRWVVNFPGLKWLSVSVISGEGFEIEVNSGDWEWESAEVEVELGIQS 182

Query: 126 LCLSGLWAGDWG-------------------------------AECLPGLCEVELRTCRS 164
           LCLSGL AGDWG                                ECLPGLCEVELRTCRS
Sbjct: 183 LCLSGLRAGDWGVGWLWRSCKNLRQLQLRGCETVGDGGSFSSFVECLPGLCEVELRTCRS 242

BLAST of Lag0018542 vs. NCBI nr
Match: XP_022989119.1 (F-box/LRR-repeat protein 7 [Cucurbita maxima])

HSP 1 Score: 214.9 bits (546), Expect = 5.9e-52
Identity = 119/195 (61.03%), Postives = 135/195 (69.23%), Query Frame = 0

Query: 6   PDLHSLSILSADCSALPTATLSAQIIPQIHLFCTNLRALRFLAGPV------SLSSGCTH 65
           P L SLSILSAD SA+PTATLS Q+I +I  FCTNL++LR LAGPV      SLSS CTH
Sbjct: 63  PFLSSLSILSADSSAVPTATLSTQVIWKIRRFCTNLQSLRLLAGPVSLSSLISLSSVCTH 122

Query: 66  LTSLCIDICRPLNFRWVVNFPALKSLSIYVGSGDGFEIELNFGDWERESVELGIESLCLS 125
           L SL I+I RPLNFRWVVNFP+LKSLSI V SG+GFEIELN  DWE ES +L I++LCLS
Sbjct: 123 LASLSINISRPLNFRWVVNFPSLKSLSISVSSGEGFEIELNSDDWEWESADLAIQNLCLS 182

Query: 126 GLWAGDWGA-------------------------------ECLPGLCEVELRTCRSIADG 164
           GL AGDWGA                               ECLP L EVELRTCRSIADG
Sbjct: 183 GLRAGDWGAGWLWRSCKNLRQLQLHSCETVGDGGSFSSFVECLPSLHEVELRTCRSIADG 242

BLAST of Lag0018542 vs. NCBI nr
Match: KAG7022709.1 (F-box/LRR-repeat protein 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.9 bits (546), Expect = 5.9e-52
Identity = 118/195 (60.51%), Postives = 135/195 (69.23%), Query Frame = 0

Query: 6   PDLHSLSILSADCSALPTATLSAQIIPQIHLFCTNLRALRFLAGPV------SLSSGCTH 65
           P + SLSILSAD SA+PTATLS Q+I +I  FCTNL++LR LAGPV      SLSS CTH
Sbjct: 63  PFISSLSILSADSSAVPTATLSTQVIWKIRRFCTNLQSLRLLAGPVSLSSLISLSSVCTH 122

Query: 66  LTSLCIDICRPLNFRWVVNFPALKSLSIYVGSGDGFEIELNFGDWERESVELGIESLCLS 125
           L SL I+I RPLNFRWVVNFP+LKSLS+ V SG+GFEIELN  DWE ES +L I+SLCLS
Sbjct: 123 LASLSINISRPLNFRWVVNFPSLKSLSVSVSSGEGFEIELNSDDWEWESADLAIQSLCLS 182

Query: 126 GLWAGDWGA-------------------------------ECLPGLCEVELRTCRSIADG 164
           GL AGDWGA                               ECLP L EVELRTCRSIADG
Sbjct: 183 GLRAGDWGAGWLWRSCKNLRQLQLRSCETVGDGGSFSSFVECLPSLHEVELRTCRSIADG 242

BLAST of Lag0018542 vs. NCBI nr
Match: KAG6588941.1 (F-box/LRR-repeat protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-51
Identity = 118/195 (60.51%), Postives = 134/195 (68.72%), Query Frame = 0

Query: 6   PDLHSLSILSADCSALPTATLSAQIIPQIHLFCTNLRALRFLAGPV------SLSSGCTH 65
           P L SLSILSAD SA+PTATLS Q+I +I  FC NL++LR LAGPV      SLSS CTH
Sbjct: 63  PFLSSLSILSADSSAVPTATLSTQVIWKIRRFCENLQSLRLLAGPVSLSSLISLSSVCTH 122

Query: 66  LTSLCIDICRPLNFRWVVNFPALKSLSIYVGSGDGFEIELNFGDWERESVELGIESLCLS 125
           L SL I+I RPLNFRWVVNFP+LKSLS+ V SG+GFEIELN  DWE ES +L I+SLCLS
Sbjct: 123 LASLSINISRPLNFRWVVNFPSLKSLSVSVSSGEGFEIELNSDDWEWESADLAIQSLCLS 182

Query: 126 GLWAGDWGA-------------------------------ECLPGLCEVELRTCRSIADG 164
           GL AGDWGA                               ECLP L EVELRTCRSIADG
Sbjct: 183 GLRAGDWGAGWLWRSCKNLRQLQLRSCETVGDGGSFSSFVECLPSLHEVELRTCRSIADG 242

BLAST of Lag0018542 vs. NCBI nr
Match: XP_022928541.1 (F-box/LRR-repeat protein 7 [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-51
Identity = 118/195 (60.51%), Postives = 134/195 (68.72%), Query Frame = 0

Query: 6   PDLHSLSILSADCSALPTATLSAQIIPQIHLFCTNLRALRFLAGPV------SLSSGCTH 65
           P L SLSILSAD SA+PTATLS Q+I +I  FC NL++LR LAGPV      SLSS CTH
Sbjct: 63  PFLSSLSILSADSSAVPTATLSTQVIWKIRRFCENLQSLRLLAGPVSLSSLISLSSVCTH 122

Query: 66  LTSLCIDICRPLNFRWVVNFPALKSLSIYVGSGDGFEIELNFGDWERESVELGIESLCLS 125
           L SL I+I RPLNFRWVVNFP+LKSLS+ V SG+GFEIELN  DWE ES +L I+SLCLS
Sbjct: 123 LASLSINISRPLNFRWVVNFPSLKSLSVSVSSGEGFEIELNSDDWEWESADLAIQSLCLS 182

Query: 126 GLWAGDWGA-------------------------------ECLPGLCEVELRTCRSIADG 164
           GL AGDWGA                               ECLP L EVELRTCRSIADG
Sbjct: 183 GLRAGDWGAGWLWRSCKNLRQLQLRSCETVGDGGSFSSFVECLPSLHEVELRTCRSIADG 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038906121.13.1e-5361.81F-box/LRR-repeat protein 4 [Benincasa hispida][more]
XP_022989119.15.9e-5261.03F-box/LRR-repeat protein 7 [Cucurbita maxima][more]
KAG7022709.15.9e-5260.51F-box/LRR-repeat protein 7, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6588941.11.7e-5160.51F-box/LRR-repeat protein 7, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022928541.11.7e-5160.51F-box/LRR-repeat protein 7 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 2..169
e-value: 2.2E-8
score: 34.9
NoneNo IPR availablePANTHERPTHR13318UNCHARACTERIZEDcoord: 128..163
coord: 6..127
NoneNo IPR availablePANTHERPTHR13318:SF77F-BOX/LRR-REPEAT PROTEIN 4-LIKEcoord: 128..163
NoneNo IPR availablePANTHERPTHR13318:SF77F-BOX/LRR-REPEAT PROTEIN 4-LIKEcoord: 6..127
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 8..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018542.1Lag0018542.1mRNA