Lag0018522 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018522
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein LURP-one-related 5
Locationchr5: 28828340 .. 28829097 (+)
RNA-Seq ExpressionLag0018522
SyntenyLag0018522
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGCTATCAACATCCATCATTCAGCCTCTGCCGCACCAATCATCGGACGGTCGAGTTTGACGGTAGAGATGTATGGAAAGTTTGGCGAGGAGTATCAGATCGATGGGTCATTTGGGCAACGTTTTTGCACAGTTTTGGATGTTAGGAAAGAGCCAGTGGCTGAGATTAGGAGGAAAGTTGATGCTTCGACCAATGTTTTGTTGGGAAAGATGTTTTTTCTCTTTCTTTAAAGCCTGGTTTGATGGGGCTATTGCTAAGGCCTTGATGTTTGTTCTTGATCGAATCAATTGTGATGATGGGATTGATTGTGGTGGTGAACCAGATCAGACCCTTGATTGATTTTGAGGACTTTTTGTTTCAAGGGGTCGTTTGTTTGCTTTCCTCCCTAAATCTCACTCTGTTAAAAAAACAGAAGAAAAAAAAGAAAGAGAAGAAGAGAAGAAAGGAAGAAGAAGAAAGAAGAAAAAAAATTCCAGCGGCGACCGACCACCCAAGATCCTCTCTTCATAACCCAAGATCCTCCCTCCGTTCCGATGCTAGAAAACAGAGGGGGAGGTCCCTCCCTCTGTTCCCGGCATTGGAAAAACAATAGAGTTTGAGAGGCTGAAGCTTCGAGGAAGGAGAAGAAGAAGAAGAAAAGGAAGGAAGGAAAAAAAACCTCGTCGGCGGCTGGCCGGCCACCGAAGTTGGAGAAGAAAAAGTTGAAGAAGAAGTTGAAGAAGAAAGGGGAGAAGAGAAAGAAGAAGGAGAATAA

mRNA sequence

ATGCTCGCTATCAACATCCATCATTCAGCCTCTGCCGCACCAATCATCGGACGGTCGAGTTTGACGGTAGAGATGTATGGAAAGTTTGGCGAGGAGTATCAGATCGATGGGTCATTTGGGCAACGTTTTTGCACAGTTTTGGATGTTAGGAAAGAGCCAGTGGCTGAGATTAGGAGGAAAGTTGATGCTTCGACCAATGTTTTGTTGGGAAAGATCTTCGAGGAAGGAGAAGAAGAAGAAGAAAAGGAAGGAAGGAAAAAAAACCTCGTCGGCGGCTGGCCGGCCACCGAAGTTGGAGAAGAAAAAGTTGAAGAAGAAGTTGAAGAAGAAAGGGGAGAAGAGAAAGAAGAAGGAGAATAA

Coding sequence (CDS)

ATGCTCGCTATCAACATCCATCATTCAGCCTCTGCCGCACCAATCATCGGACGGTCGAGTTTGACGGTAGAGATGTATGGAAAGTTTGGCGAGGAGTATCAGATCGATGGGTCATTTGGGCAACGTTTTTGCACAGTTTTGGATGTTAGGAAAGAGCCAGTGGCTGAGATTAGGAGGAAAGTTGATGCTTCGACCAATGTTTTGTTGGGAAAGATCTTCGAGGAAGGAGAAGAAGAAGAAGAAAAGGAAGGAAGGAAAAAAAACCTCGTCGGCGGCTGGCCGGCCACCGAAGTTGGAGAAGAAAAAGTTGAAGAAGAAGTTGAAGAAGAAAGGGGAGAAGAGAAAGAAGAAGGAGAATAA

Protein sequence

MLAINIHHSASAAPIIGRSSLTVEMYGKFGEEYQIDGSFGQRFCTVLDVRKEPVAEIRRKVDASTNVLLGKIFEEGEEEEEKEGRKKNLVGGWPATEVGEEKVEEEVEEERGEEKEEGE
Homology
BLAST of Lag0018522 vs. NCBI nr
Match: XP_004152197.1 (protein LURP-one-related 5 [Cucumis sativus] >KGN52896.1 hypothetical protein Csa_014695 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-17
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 15  IIGRSSLTVEMYGKFGEEYQIDGSFGQRFCTVLDVRKEPVAEIRRKVDASTNVLLGK 72
           IIGRSS TVEMYG  GEEYQI+G FGQR CTVL+V+KEPVA IRRKVDASTNVLLGK
Sbjct: 113 IIGRSSFTVEMYGNPGEEYQIEGCFGQRLCTVLNVKKEPVATIRRKVDASTNVLLGK 169

BLAST of Lag0018522 vs. NCBI nr
Match: XP_038895551.1 (protein LURP-one-related 5-like [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-17
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 15  IIGRSSLTVEMYGKFGEEYQIDGSFGQRFCTVLDVRKEPVAEIRRKVDASTNVLLGK 72
           IIGRSS TVEMYG  GEEYQI+G FGQR CTVL+V+KEPVA IRRKVDASTNVLLGK
Sbjct: 113 IIGRSSFTVEMYGNPGEEYQIEGCFGQRLCTVLNVKKEPVATIRRKVDASTNVLLGK 169

BLAST of Lag0018522 vs. NCBI nr
Match: XP_008454228.1 (PREDICTED: protein LURP-one-related 5 [Cucumis melo] >KAA0044446.1 protein LURP-one-related 5 [Cucumis melo var. makuwa] >TYK29573.1 protein LURP-one-related 5 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 6.6e-17
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 15  IIGRSSLTVEMYGKFGEEYQIDGSFGQRFCTVLDVRKEPVAEIRRKVDASTNVLLGK 72
           IIGRSS TVEMYG  GEEYQI+G FGQR CTVL+VRKEPVA IRRKVDAST VLLGK
Sbjct: 114 IIGRSSFTVEMYGNPGEEYQIEGCFGQRLCTVLNVRKEPVATIRRKVDASTKVLLGK 170

BLAST of Lag0018522 vs. NCBI nr
Match: XP_023526859.1 (protein LURP-one-related 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-16
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 15  IIGRSSLTVEMYGKFGEEYQIDGSFGQRFCTVLDVRKEPVAEIRRKVDASTNVLLGK 72
           IIG SSLTVEMYG  G+EYQI+GSFGQR CTVL+V+KE VA+IRRKVDASTNV+LGK
Sbjct: 113 IIGPSSLTVEMYGNPGKEYQIEGSFGQRLCTVLNVKKEAVAKIRRKVDASTNVVLGK 169

BLAST of Lag0018522 vs. NCBI nr
Match: XP_022979417.1 (protein LURP-one-related 5-like [Cucurbita maxima])

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-16
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 15  IIGRSSLTVEMYGKFGEEYQIDGSFGQRFCTVLDVRKEPVAEIRRKVDASTNVLLGK 72
           IIG SSLTVEMYG  G+EYQI+GSFGQR CTVL+V+KE VA+IRRKVDASTNV+LGK
Sbjct: 112 IIGPSSLTVEMYGNPGKEYQIEGSFGQRLCTVLNVKKEAVAKIRRKVDASTNVVLGK 168

BLAST of Lag0018522 vs. ExPASy Swiss-Prot
Match: Q9LVZ8 (Protein LURP-one-related 12 OS=Arabidopsis thaliana OX=3702 GN=At3g15810 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-11
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 9   SASAAPIIGRSSLTVEMYGKFGEEYQIDGSFGQRFCTVLDVRKEPVAEIRRKVDASTNVL 68
           S   + IIGR ++ VE+Y   GEEY IDG F QR C + D +K  VAEI+RKVDASTNV+
Sbjct: 113 SVRRSSIIGRCTMEVEVYDGTGEEYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVM 172

Query: 69  LGKIFEEGEEEEEKEGR-------KKNLVGGWPATEVGEEKVEEEVEE 110
           LG+     E +   +G          + + G    E+G+E+V   VE+
Sbjct: 173 LGRDVFTLEIKPGFDGAFAMGLVVVLDQINGDDPVEIGDEQVHPFVED 220

BLAST of Lag0018522 vs. ExPASy Swiss-Prot
Match: Q9SSC7 (Protein LURP-one-related 5 OS=Arabidopsis thaliana OX=3702 GN=At1g80120 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-10
Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = 0

Query: 15  IIGRSSLTVEMYGKFG-EEYQIDGSFGQRFCTVLDVR-KEPVAEIRRKVDASTNVLLGK- 74
           IIGR+S+TVE+YG +   EY I+GSFG R CTV++   +  VAEIRRKVDASTNV+LGK 
Sbjct: 106 IIGRNSVTVEVYGDYQCSEYLIEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKD 165

Query: 75  IFEEGEEEEEKEGRKKNLV------GGWPATEVGEEKVEEEVEE 110
           +F    +          LV       G    EVGEE+V    E+
Sbjct: 166 VFSLNVKPGFDGAFAMGLVLVLDQIYGDDLLEVGEEQVHPSAED 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004152197.13.0e-1784.21protein LURP-one-related 5 [Cucumis sativus] >KGN52896.1 hypothetical protein Cs... [more]
XP_038895551.13.0e-1784.21protein LURP-one-related 5-like [Benincasa hispida][more]
XP_008454228.16.6e-1784.21PREDICTED: protein LURP-one-related 5 [Cucumis melo] >KAA0044446.1 protein LURP-... [more]
XP_023526859.15.6e-1680.70protein LURP-one-related 5-like [Cucurbita pepo subsp. pepo][more]
XP_022979417.15.6e-1680.70protein LURP-one-related 5-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9LVZ83.3e-1141.67Protein LURP-one-related 12 OS=Arabidopsis thaliana OX=3702 GN=At3g15810 PE=2 SV... [more]
Q9SSC73.6e-1047.12Protein LURP-one-related 5 OS=Arabidopsis thaliana OX=3702 GN=At1g80120 PE=2 SV=... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038595LURP-one-related superfamilyGENE3D2.40.160.200coord: 6..73
e-value: 1.6E-5
score: 26.4
IPR007612LURP-one-relatedPFAMPF04525LORcoord: 23..71
e-value: 1.1E-6
score: 28.4
IPR007612LURP-one-relatedPANTHERPTHR31087FAMILY NOT NAMEDcoord: 12..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..119
NoneNo IPR availablePANTHERPTHR31087:SF60PROTEIN LURP-ONE-RELATED 5coord: 12..71
IPR025659Tubby-like, C-terminalSUPERFAMILY54518Tubby C-terminal domain-likecoord: 15..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018522.1Lag0018522.1mRNA