Lag0018505 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018505
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGBF-interacting protein 1-like isoform X2
Locationchr5: 28440166 .. 28440762 (-)
RNA-Seq ExpressionLag0018505
SyntenyLag0018505
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGTGAGTGCACTCCCTTGCTTCACATGTTCTTGAAGAATGGGAAGGTGGTCGACAAGTTTGTAGGTGCAAGAAAGGATGCGGTTGGAGAAGATTGTATAACAGCATGCCCAATTGTATTACAGCATGCCCAATGGAAAGTCTACGTTGAGGGGATACCAATATATACCACCATCTGTTTCTTTTGTTTTCATTAGAAGAAGAAAAAGTTTATGCAACTTTGGTGAGTTGCTATGAATTGATTCTTTTGGTTAGAACAACTTTGAATTTGCTTGTGTTGGATTGTTGTTCAATTAGTTTACTATTTCGAGGCTACCGGACTTATTATGTAACTATCTTTTTTTGTTCTTTGAAATCACGTTTTCAATGAAATTCTTGTGGATGCTAGTTTGTAAACGTTTACCTTGAAATATGGTTGAACGGAAACTGAGATTGTGGATGTGTTTTGTTCTCAGAACATGGGATACAAAGGTTCAGTGGATTCACAAAGACATTCTGAGGATGACAAGCAAGGGACGAAGGTATCTACATTGTCTGATCATAATGTTCGAAGAGGGGACTATGCAAAAAGTTCTTGGCCTGGTACTTTTTAA

mRNA sequence

ATGGGGAGTGAGTGCACTCCCTTGCTTCACATGTTCTTGAAGAATGGGAAGGTGGTCGACAAGTTTGTAGGTGCAAGAAAGGATGCGGTTGGAGAAGATTGTATAACAGCATGCCCAATTGTATTACAGCATGCCCAATGGAAAAACATGGGATACAAAGGTTCAGTGGATTCACAAAGACATTCTGAGGATGACAAGCAAGGGACGAAGGTATCTACATTGTCTGATCATAATGTTCGAAGAGGGGACTATGCAAAAAGTTCTTGGCCTGGTACTTTTTAA

Coding sequence (CDS)

ATGGGGAGTGAGTGCACTCCCTTGCTTCACATGTTCTTGAAGAATGGGAAGGTGGTCGACAAGTTTGTAGGTGCAAGAAAGGATGCGGTTGGAGAAGATTGTATAACAGCATGCCCAATTGTATTACAGCATGCCCAATGGAAAAACATGGGATACAAAGGTTCAGTGGATTCACAAAGACATTCTGAGGATGACAAGCAAGGGACGAAGGTATCTACATTGTCTGATCATAATGTTCGAAGAGGGGACTATGCAAAAAGTTCTTGGCCTGGTACTTTTTAA

Protein sequence

MGSECTPLLHMFLKNGKVVDKFVGARKDAVGEDCITACPIVLQHAQWKNMGYKGSVDSQRHSEDDKQGTKVSTLSDHNVRRGDYAKSSWPGTF
Homology
[Close]
BLAST of Lag0018505 vs. NCBI nr
Match: XP_022948928.1 (uncharacterized protein LOC111452434 isoform X2 [Cucurbita moschata])

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 48  KNMGYKGSVDSQRHSEDDKQGTKVSTLSDHNVRRGDYAKSSWPG 92
           +NMGYKGS+D+QRHSED +QGTKV TLSD NVRRG YAKSSWPG
Sbjct: 73  ENMGYKGSLDAQRHSEDVRQGTKVYTLSDRNVRRGAYAKSSWPG 116

[Close]
BLAST of Lag0018505 vs. NCBI nr
Match: XP_022948927.1 (uncharacterized protein LOC111452434 isoform X1 [Cucurbita moschata])

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 48  KNMGYKGSVDSQRHSEDDKQGTKVSTLSDHNVRRGDYAKSSWPG 92
           +NMGYKGS+D+QRHSED +QGTKV TLSD NVRRG YAKSSWPG
Sbjct: 73  ENMGYKGSLDAQRHSEDVRQGTKVYTLSDRNVRRGAYAKSSWPG 116

[Close]
BLAST of Lag0018505 vs. NCBI nr
Match: XP_022152635.1 (uncharacterized protein LOC111020306 isoform X2 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 48  KNMGYKGSVDSQRHSEDDKQGTKVSTLSDHNVRRGDYAKSSWPG 92
           +NMGYKGS+D+QRHSED +QGTKV TLSD NVRRG YAKSSWPG
Sbjct: 73  ENMGYKGSLDTQRHSEDVRQGTKVYTLSDRNVRRGAYAKSSWPG 116

[Close]
BLAST of Lag0018505 vs. NCBI nr
Match: XP_022948929.1 (uncharacterized protein LOC111452434 isoform X3 [Cucurbita moschata])

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 48  KNMGYKGSVDSQRHSEDDKQGTKVSTLSDHNVRRGDYAKSSWPG 92
           +NMGYKGS+D+QRHSED +QGTKV TLSD NVRRG YAKSSWPG
Sbjct: 73  ENMGYKGSLDAQRHSEDVRQGTKVYTLSDRNVRRGAYAKSSWPG 116

[Close]
BLAST of Lag0018505 vs. NCBI nr
Match: XP_022152633.1 (uncharacterized protein LOC111020306 isoform X1 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 48  KNMGYKGSVDSQRHSEDDKQGTKVSTLSDHNVRRGDYAKSSWPG 92
           +NMGYKGS+D+QRHSED +QGTKV TLSD NVRRG YAKSSWPG
Sbjct: 73  ENMGYKGSLDTQRHSEDVRQGTKVYTLSDRNVRRGAYAKSSWPG 116

The following BLAST results are available for this feature:
BLAST of Lag0018505 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022948928.17.2e-1181.82uncharacterized protein LOC111452434 isoform X2 [Cucurbita moschata][more]
XP_022948927.17.2e-1181.82uncharacterized protein LOC111452434 isoform X1 [Cucurbita moschata][more]
XP_022152635.17.2e-1181.82uncharacterized protein LOC111020306 isoform X2 [Momordica charantia][more]
XP_022948929.17.2e-1181.82uncharacterized protein LOC111452434 isoform X3 [Cucurbita moschata][more]
XP_022152633.17.2e-1181.82uncharacterized protein LOC111020306 isoform X1 [Momordica charantia][more]
BLAST of Lag0018505 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018505.1Lag0018505.1mRNA