Lag0018503 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018503
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGRF-type domain-containing protein
Locationchr5: 28422261 .. 28423245 (+)
RNA-Seq ExpressionLag0018503
SyntenyLag0018503
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACGAGAAATGGGACAGAAAGCTCTGAAAATTACAATGGACAAGTGTGATGGAAATTCAGAGTCTGTAAGAGTCGATGGCAGTGGAACCAAGAACCCTACGTACTGTTATTGTGGGTTACGAGCTCGATTAATTACTTCATGGACGAAGAGGAATCCTGGACGAAGGTTCTATGGATGTTCTGGTTACAAGGTACGAATTCTTTCGTTAATGACTAGTTAATTCAATATTCGGACACCACAACCATTTGTTTTAGATCCTCGTTTGTGCGTCTTCTGTTGTGCAGGGAATGGCTCGGGTTGTGGGTTTTTTGATTGGTGTGATCCAGAAGTAACAAAACACAGCAAAGAAGTGATTAACAAACTAAGAGATGAAGTTGGTCGGTTGAAGAAGATTGCAAAAAAATTGCACCGATTGGAGTGGTTGTATCGTGTAATAATTGTAGTATTGGTGGGAACTATTCTGTATTTGGGTTTTGATTAGTAGGAGCTATGAAGTTTATGGATACATGAAAGTGGTGATGATTTGTAGTTGGGTTCTTCTAACGATTATCTCTGTTATGTTGTTAATTCTATTGAACTTTGATGGATTTTGCTTCATCTTTTGTTGATCTTATCATCCCTGTTCTTTATATGTTGCTTACATAGTTTGGAAGTTGATAACTAATGAGCACACCTTGGTAGTAATGTAAGGTTTACAATTTTGGTCCCTATTGAATTTATAGGCTTTTGTGGTCCCTTGTGTAAAAGCTATACACTTTTTGGTCCCCGATGTAAGTTATACACTTTTGTGGTCCCTGATGTAAGTTATAACCTTTTATGCACTTTTCGTCACTAGGTTGTACGTAATTCTAGGATCGTTAGGCTTCTTGTCAAGTCCAACACATCTTGTTGTATTGATACAGTCTGTTTCTTCTGAAGCTGAAGTTTCAAACCTGGGGGAGTGGAAGAACTGCAAGAACGTCAATTGTGAAGTAGGATAA

mRNA sequence

ATGTCACGAGAAATGGGACAGAAAGCTCTGAAAATTACAATGGACAAGTGTGATGGAAATTCAGAGTCTGTAAGAGTCGATGGCAGTGGAACCAAGAACCCTACGTACTGTTATTGTGGGTTACGAGCTCGATTAATTACTTCATGGACGAAGAGGAATCCTGGACGAAGGTTCTATGGATGTTCTGGTTACAAGGGAATGGCTCGGGTTGTGGGTTTTTTGATTGGTGTGATCCAGAAGTTGTACGTAATTCTAGGATCGTTAGGCTTCTTGTCAAGTCCAACACATCTTGTTGTATTGATACAGTCTGTTTCTTCTGAAGCTGAAGTTTCAAACCTGGGGGAGTGGAAGAACTGCAAGAACGTCAATTGTGAAGTAGGATAA

Coding sequence (CDS)

ATGTCACGAGAAATGGGACAGAAAGCTCTGAAAATTACAATGGACAAGTGTGATGGAAATTCAGAGTCTGTAAGAGTCGATGGCAGTGGAACCAAGAACCCTACGTACTGTTATTGTGGGTTACGAGCTCGATTAATTACTTCATGGACGAAGAGGAATCCTGGACGAAGGTTCTATGGATGTTCTGGTTACAAGGGAATGGCTCGGGTTGTGGGTTTTTTGATTGGTGTGATCCAGAAGTTGTACGTAATTCTAGGATCGTTAGGCTTCTTGTCAAGTCCAACACATCTTGTTGTATTGATACAGTCTGTTTCTTCTGAAGCTGAAGTTTCAAACCTGGGGGAGTGGAAGAACTGCAAGAACGTCAATTGTGAAGTAGGATAA

Protein sequence

MSREMGQKALKITMDKCDGNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGFLIGVIQKLYVILGSLGFLSSPTHLVVLIQSVSSEAEVSNLGEWKNCKNVNCEVG
Homology
[Close]
BLAST of Lag0018503 vs. NCBI nr
Match: AES59725.1 (GRF zinc finger protein [Medicago truncatula])

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-05
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 0 

Query: 21 SESVRVDGSG--TKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGFLIGVI 80
          S +  V GS    K    CYCG+ + L+T+WT +NPGRRF+GC  Y    R   F +G I
Sbjct: 6  SSTSTVSGSSCLDKTKLVCYCGVESPLVTAWTDQNPGRRFHGCGNYL-QRRKCSFFVGSI 65

[Close]
BLAST of Lag0018503 vs. NCBI nr
Match: XP_017245956.1 (PREDICTED: ERI1 exoribonuclease 2-like [Daucus carota subsp. sativus] >KZN08488.1 hypothetical protein DCAR_001034 [Daucus carota subsp. sativus])

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-05
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 22 ESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGM 68
          +SV+ D  GT     C+CG RAR+ TSWT +NPGRRFY C+  KGM
Sbjct: 19 QSVKKDEYGT-----CFCGRRARICTSWTLKNPGRRFYKCASAKGM 59

[Close]
BLAST of Lag0018503 vs. NCBI nr
Match: PIN21218.1 (DNA topoisomerase [Handroanthus impetiginosus])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = 0 

Query: 29 SGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK 66
          S  +  TYC+CG RA L TSWTK NPGRRF+ C  YK
Sbjct: 2  SSIEGSTYCHCGRRATLRTSWTKENPGRRFHSCHSYK 38

[Close]
BLAST of Lag0018503 vs. NCBI nr
Match: CAB4083566.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0 

Query: 19 GNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGF 74
          GN+ES  +  S   N   CYCG RA + TSWT++NPGRRF+GC  Y    +  G+
Sbjct: 9  GNTES--MSSSSRTNIRICYCGDRAGMWTSWTRKNPGRRFFGCPNYMDEEKDCGY 61

[Close]
BLAST of Lag0018503 vs. NCBI nr
Match: KAF8019906.1 (hypothetical protein BT93_G0562 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 20 NSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK 66
          ++ S R DG G +   +CYCGL +   TSWT+ NPGRRFYGC+ Y+
Sbjct: 10 SNSSHRSDGEGERE-RFCYCGLSSPRRTSWTRMNPGRRFYGCARYR 54

The following BLAST results are available for this feature:
BLAST of Lag0018503 vs. NCBI nr
Match NameE-valueIdentityDescription
AES59725.14.7e-0545.16GRF zinc finger protein [Medicago truncatula][more]
XP_017245956.16.2e-0556.52PREDICTED: ERI1 exoribonuclease 2-like [Daucus carota subsp. sativus] >KZN08488.... [more]
PIN21218.11.1e-0462.16DNA topoisomerase [Handroanthus impetiginosus][more]
CAB4083566.11.1e-0447.27unnamed protein product [Lactuca saligna][more]
KAF8019906.11.4e-0452.17hypothetical protein BT93_G0562 [Corymbia citriodora subsp. variegata][more]
BLAST of Lag0018503 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018503.1Lag0018503.1mRNA