Lag0018487 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018487
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCRAL-TRIO domain-containing protein
Locationchr5: 28186029 .. 28186670 (+)
RNA-Seq ExpressionLag0018487
SyntenyLag0018487
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAGGGGTTTTAGAAGCTTTTTGCCAAGAAATTCTCTTCATGTTCTATCGCCGCAGAAAGACACATATATTGTACCACAACAATACTGAATGTTCAGAGACTGGTAATTTCTGAGCATATTTTGAGTTATGGTAGTTTTGCATTGTATGTGCTGACAATGGTATTGCTTCTTATAATTGTGTAGAACTTCGTGAGCTTTGGCAAGCTTGCACGTGATCTTGTTATGCGCATCCAGAAAATTGATGGGGACAATTATCCTAAGGTTTCCCAAACTATATTTTATAGTTAACTAGTTTTCTTACTTTAGGAGCATCTATAATTTTTTGAGTTTTGAACAGTTCATGAATTATGAGCACTGAAGTTGGTTCTTTTCTGGTTTTATAGGTTTTAGGCAGCAAATTTCAGAATAAGTTGTTGGAGGTCATAGACTCAAGTTATGAATTCCTTTCAAGATATTTTGGTTCTCATGTTTTACTTTTAAAGTTGTATTGATTTTTTACCTTTTATGAAATTGAAACAAATTTTTTCCTCCCTAAACAGACAACTTCCTAACTTCCTTGGAGGAGATTGTTCGTGTTCAAATGAAGGTGGATGTCTTAGATATGACAAAGGGCCCTGGAATGATCCTGAAATCATGA

mRNA sequence

ATGTTCAGGGGTTTTAGAAGCTTTTTGCCAAGAAATTCTCTTCATGTTCTATCGCCGCAGAAAGACACATATATTAACTTCGTGAGCTTTGGCAAGCTTGCACGTGATCTTGTTATGCGCATCCAGAAAATTGATGGGGACAATTATCCTAAGGTTTTAGGCAGCAAATTTCAGAATAAGTTGTTGGAGGTCATAGACTCAAGTTATGAATTCCTTTCAAGATATTTTGACAACTTCCTAACTTCCTTGGAGGAGATTGTTCGTGTTCAAATGAAGGTGGATGTCTTAGATATGACAAAGGGCCCTGGAATGATCCTGAAATCATGA

Coding sequence (CDS)

ATGTTCAGGGGTTTTAGAAGCTTTTTGCCAAGAAATTCTCTTCATGTTCTATCGCCGCAGAAAGACACATATATTAACTTCGTGAGCTTTGGCAAGCTTGCACGTGATCTTGTTATGCGCATCCAGAAAATTGATGGGGACAATTATCCTAAGGTTTTAGGCAGCAAATTTCAGAATAAGTTGTTGGAGGTCATAGACTCAAGTTATGAATTCCTTTCAAGATATTTTGACAACTTCCTAACTTCCTTGGAGGAGATTGTTCGTGTTCAAATGAAGGTGGATGTCTTAGATATGACAAAGGGCCCTGGAATGATCCTGAAATCATGA

Protein sequence

MFRGFRSFLPRNSLHVLSPQKDTYINFVSFGKLARDLVMRIQKIDGDNYPKVLGSKFQNKLLEVIDSSYEFLSRYFDNFLTSLEEIVRVQMKVDVLDMTKGPGMILKS
Homology
BLAST of Lag0018487 vs. NCBI nr
Match: PON60809.1 (CRAL/TRIO, N-terminal domain containing protein [Trema orientale])

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-11
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPKVLGSKFQNKLLEVIDSSY--EFL 73
           +N+VSFGKLA DLVMR+QKIDGDNYP+VLG+K++NKLLEVIDSS   EFL
Sbjct: 225 LNWVSFGKLAHDLVMRMQKIDGDNYPEVLGNKYRNKLLEVIDSSQLPEFL 274

BLAST of Lag0018487 vs. NCBI nr
Match: PON70808.1 (CRAL-TRIO lipid binding domain containing protein [Parasponia andersonii])

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-11
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPKVLGSKFQNKLLEVIDSSY--EFL 73
           +N+VSFGKLA DLVMR+QKIDGDNYP+VLG+K++NKLLEVIDSS   EFL
Sbjct: 225 LNWVSFGKLAHDLVMRMQKIDGDNYPEVLGNKYRNKLLEVIDSSQLPEFL 274

BLAST of Lag0018487 vs. NCBI nr
Match: PQQ08035.1 (phosphatidylinositol/phosphatidylcholine transfer protein SFH9 isoform X2 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 77.4 bits (189), Expect = 8.4e-11
Identity = 35/44 (79.55%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPKVLGSKFQNKLLEVIDSS 69
           +N+VSFGK+A DLVMR+QKIDGDNYP+VLG+KF++KLLEVIDSS
Sbjct: 180 LNWVSFGKVAHDLVMRMQKIDGDNYPEVLGNKFRSKLLEVIDSS 223

BLAST of Lag0018487 vs. NCBI nr
Match: GAY40104.1 (hypothetical protein CUMW_049460 [Citrus unshiu])

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-10
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPKVLGSKFQNKLLEVIDSS 69
           +N++SFGK+A DLVMRIQKIDGDNYP+VLG KF +KLLEVIDSS
Sbjct: 225 VNWMSFGKVAHDLVMRIQKIDGDNYPEVLGYKFHDKLLEVIDSS 268

BLAST of Lag0018487 vs. NCBI nr
Match: RZB52389.1 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 isoform D [Glycine soja])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 33/44 (75.00%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPKVLGSKFQNKLLEVIDSS 69
           +N+VSF K+A DLVMR+QKIDGDNYP+VLG+KFQ++LLE+IDSS
Sbjct: 225 VNWVSFSKVAHDLVMRMQKIDGDNYPEVLGNKFQSRLLEIIDSS 268

BLAST of Lag0018487 vs. ExPASy Swiss-Prot
Match: Q9SI13 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 OS=Arabidopsis thaliana OX=3702 GN=SFH10 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-05
Identity = 27/78 (34.62%), Postives = 38/78 (48.72%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPK--------------------------------- 69
           +   +F K ARDL+ R+QK+DGDNYP+                                 
Sbjct: 206 VGLKNFNKAARDLITRLQKVDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKI 265

BLAST of Lag0018487 vs. ExPASy Swiss-Prot
Match: Q8GXC6 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH5 OS=Arabidopsis thaliana OX=3702 GN=SFH5 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-05
Identity = 27/78 (34.62%), Postives = 39/78 (50.00%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPK--------------------------------- 69
           + F +F K ARDL++++QKID DNYP+                                 
Sbjct: 238 VGFKNFSKPARDLIIQLQKIDNDNYPETLHRMFIINGGSGFKLVWATVKQFLDPKTVTKI 297

BLAST of Lag0018487 vs. ExPASy Swiss-Prot
Match: Q94A34 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 OS=Arabidopsis thaliana OX=3702 GN=SFH12 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.2e-05
Identity = 27/78 (34.62%), Postives = 37/78 (47.44%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPK--------------------------------- 69
           +   +F K ARDL+ R+QK+DGDNYP+                                 
Sbjct: 203 VGLKNFNKAARDLITRLQKVDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKI 262

BLAST of Lag0018487 vs. ExPASy Swiss-Prot
Match: Q93ZE9 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 OS=Arabidopsis thaliana OX=3702 GN=SFH3 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.2e-05
Identity = 29/78 (37.18%), Postives = 37/78 (47.44%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPK--------------------------------- 69
           +   SF K ARDL+ RIQKID DNYP+                                 
Sbjct: 220 VGLKSFSKAARDLLQRIQKIDSDNYPETLNRMFIINAGSGFRLLWSTVKSFLDPKTTAKI 279

BLAST of Lag0018487 vs. ExPASy Swiss-Prot
Match: F4J7S8 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 OS=Arabidopsis thaliana OX=3702 GN=SFH9 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.2e-05
Identity = 20/33 (60.61%), Postives = 28/33 (84.85%), Query Frame = 0

Query: 25  INFVSFGKLARDLVMRIQKIDGDNYPKVLGSKF 58
           ++++SF KLA+DLVMR+QKIDGDNYP+ L   +
Sbjct: 228 VSWMSFRKLAQDLVMRMQKIDGDNYPETLNQMY 260

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON60809.12.9e-1178.00CRAL/TRIO, N-terminal domain containing protein [Trema orientale][more]
PON70808.12.9e-1178.00CRAL-TRIO lipid binding domain containing protein [Parasponia andersonii][more]
PQQ08035.18.4e-1179.55phosphatidylinositol/phosphatidylcholine transfer protein SFH9 isoform X2 [Prunu... [more]
GAY40104.11.9e-1079.55hypothetical protein CUMW_049460 [Citrus unshiu][more]
RZB52389.13.2e-1075.00Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 isoform D [Glycin... [more]
Match NameE-valueIdentityDescription
Q9SI133.2e-0534.62Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 OS=Arabidopsis t... [more]
Q8GXC63.2e-0534.62Phosphatidylinositol/phosphatidylcholine transfer protein SFH5 OS=Arabidopsis th... [more]
Q94A344.2e-0534.62Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 OS=Arabidopsis t... [more]
Q93ZE94.2e-0537.18Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 OS=Arabidopsis th... [more]
F4J7S84.2e-0560.61Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 OS=Arabidopsis th... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR45657:SF43PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH9coord: 25..53
NoneNo IPR availablePANTHERPTHR45657CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATEDcoord: 25..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018487.1Lag0018487.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane