Lag0018449 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018449
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein Ycf2-like
Locationchr5: 27611195 .. 27611981 (-)
RNA-Seq ExpressionLag0018449
SyntenyLag0018449
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGACCTGGAGTGCAGAGTTTTGAGTCGCCAAAGGTAATTACTAGTTAAATTTACTATTTCAAATACTATTTGGCAATGCTTGTTAACTAAATGTATGTAACCTTTTTAGCATACCAGTTGGAGATCTGCCCCCTACTAGCAACTGATGAAGGGATAACTATGGAATTTTTCAAGTCATTTGTTGATGGAGAGGCAGTTATGAGGCGAGAATTGCATACTCAACTGTCTATAGAGCACCATGGACACCATGTAGCTGACTTGACATTTAACGAAAGTGCAACATCGATAGTTGATGGTAAACGCATAAGTGAAATGTAGGAGTTAATGACAGAGAGTTTGAACATAATGAAAAAAAAAATCAAACAGTTATGGATGAGCGATTAGATGAGCTTGTTGAAAGTGTCAACCTAATGATGGACTACATGAAAAATAGACCAGTGACAAGAACAAACAATTTTGTGGATGACATTACTGACAATTATAGTGTATGTGTTGCATTTACACTATATATATGTTTTGTAGTCGATGAGTTCTCTTAATTTTGTTCATACAGGGAGTGGTCGAATTTTTTCGAGAGCTAAATGACTTGGAGAATGAACATGAGGAGAATGATGATGAACTCAATCTAAAAGATGGTAAGGATGACCAACTGTTCAAGTTTAGAAAGGATGACGATGACGATGATCCACTAGGGCAAACAACCCAAGAAAATTTGGTAGGGATGTCTGCCATTACATGCATCAAAGATTCAGGAGTTAGTGAAACTAGAAACGACTGTTAG

mRNA sequence

ATGGAAGGACCTGGAGTGCAGAGTTTTGAGTCGCCAAAGTTGGAGATCTGCCCCCTACTAGCAACTGATGAAGGGATAACTATGGAATTTTTCAAGTCATTTGTTGATGGAGAGGCAGTTATGAGGCGAGAATTGCATACTCAACTGTCTATAGAGCACCATGGACACCATGTAGCTGACTTGACATTTAACGAAAGTGCAACATCGATAGTTGATGTTATGGATGAGCGATTAGATGAGCTTGTTGAAAGTGTCAACCTAATGATGGACTACATGAAAAATAGACCAGTGACAAGAACAAACAATTTTGTGGATGACATTACTGACAATTATAGTGGAGTGGTCGAATTTTTTCGAGAGCTAAATGACTTGGAGAATGAACATGAGGAGAATGATGATGAACTCAATCTAAAAGATGGTAAGGATGACCAACTGTTCAAGTTTAGAAAGGATGACGATGACGATGATCCACTAGGGCAAACAACCCAAGAAAATTTGGTAGGGATGTCTGCCATTACATGCATCAAAGATTCAGGAGTTAGTGAAACTAGAAACGACTGTTAG

Coding sequence (CDS)

ATGGAAGGACCTGGAGTGCAGAGTTTTGAGTCGCCAAAGTTGGAGATCTGCCCCCTACTAGCAACTGATGAAGGGATAACTATGGAATTTTTCAAGTCATTTGTTGATGGAGAGGCAGTTATGAGGCGAGAATTGCATACTCAACTGTCTATAGAGCACCATGGACACCATGTAGCTGACTTGACATTTAACGAAAGTGCAACATCGATAGTTGATGTTATGGATGAGCGATTAGATGAGCTTGTTGAAAGTGTCAACCTAATGATGGACTACATGAAAAATAGACCAGTGACAAGAACAAACAATTTTGTGGATGACATTACTGACAATTATAGTGGAGTGGTCGAATTTTTTCGAGAGCTAAATGACTTGGAGAATGAACATGAGGAGAATGATGATGAACTCAATCTAAAAGATGGTAAGGATGACCAACTGTTCAAGTTTAGAAAGGATGACGATGACGATGATCCACTAGGGCAAACAACCCAAGAAAATTTGGTAGGGATGTCTGCCATTACATGCATCAAAGATTCAGGAGTTAGTGAAACTAGAAACGACTGTTAG

Protein sequence

MEGPGVQSFESPKLEICPLLATDEGITMEFFKSFVDGEAVMRRELHTQLSIEHHGHHVADLTFNESATSIVDVMDERLDELVESVNLMMDYMKNRPVTRTNNFVDDITDNYSGVVEFFRELNDLENEHEENDDELNLKDGKDDQLFKFRKDDDDDDPLGQTTQENLVGMSAITCIKDSGVSETRNDC
Homology
[Close]
BLAST of Lag0018449 vs. NCBI nr
Match: XP_038887714.1 (cilia- and flagella-associated protein 251-like [Benincasa hispida])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-06
Identity = 50/184 (27.17%), Postives = 87/184 (47.28%), Query Frame = 0 

Query: 6   VQSFESPKLEICPLLATDEGITMEFFKSFVDGEAVMRRELHTQLSIEHHGHHVADLTFN- 65
           +++ +  +LEICPLLAT + +TM +F  F++ E  + +E+  ++S       V +L+ N 
Sbjct: 59  METKKGKELEICPLLATPQEMTMSYFAPFINEEKKVLQEVEEEMSRYRPRKRVVELSLNR 118

Query: 66  --------------ESATSIVDVMDERLDE------------------LVESVNLMMDYM 125
                         E    I  +M+ R+DE                  LVES+  M+DYM
Sbjct: 119 RLGLSFDKDEMERFEGIVKIQQLMNTRMDENFDAMKISQHILTKKIDDLVESLKKMIDYM 178

Query: 126 KNRPVTRTNNFVDDITDNYSGVVEFFRELNDLENEHEENDDELNLKDGKDDQLFKFRKDD 157
           K     +++    ++   +    +F +EL+ +E E EE +++  L D  D      RKDD
Sbjct: 179 KTIQTFQSHASTSNL---FMPTSQFEKELDGIEKEQEEKEEDKGLVDAFDTPTIIRRKDD 238

The following BLAST results are available for this feature:
BLAST of Lag0018449 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887714.13.7e-0627.17cilia- and flagella-associated protein 251-like [Benincasa hispida][more]
BLAST of Lag0018449 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018449.1Lag0018449.1mRNA