Lag0018435 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018435
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein FAR1-RELATED SEQUENCE 3-like
Location	chr5: 27017624 .. 27018596 (+)
RNA-Seq Expression	Lag0018435
Synteny	Lag0018435

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCCTGGTTGTTCAATGTATTGTCGAAAATTGCAAATGGTTTCTACGAGCATGTCGTTATGGTGAAGTTGGCAGTGACTCATAGGTTATTACAAGATTTGATGACGACCATACATGTTCTCTGGACATTGTCTTAAATGATCATAAATAAGCGACGTATAATGTTATTAAGGAGTTCATTAAGAGGATGATTAGTATTGACGATAGTCAATTGTCGACTCCAAAGGATATTATCTCATTCGTTCGTTCTGAGCATGGAATAAGAATTAGCTATCAAAAAGCATGACGTGCTCGCGAAGCTGCACTGAATGAAATAAGAGGATCACCAGAAGAATCATATCAGAAACTTGCTTCTTTTGCTCATATACTAAATTTAAAGAACCCAGGTATTTATACGTTGTCAATTTATATATATGATTTTAAATTCATTGTTGAGTATATTCAGTATATTTTCAGGTGTATATCAAATACTATTACAATTATAATTTGTGTATAGGATCGGTTACTAGTCTTAAAAGTAGACGATGATGGAAGGTTTCGTTATTTCTTCATGGCCTTGTCAGCATGTATATCTAGTTGGCAACACTGCCGTCCAATTATCTCTGTTGATGGGACAAGAACAAATATGCTGGCACCCTTATTACTGCTTCTACACCCGATGCAAATGACCAGATTTTTCCATTAGCATTTTGCGTGGTTGATTCAGAGAATGACATGTCGTGGCAATGGTTTTTCATGCAACTGAAGCAGATTGTTGGGAATCGTAAAGATCTTGTTATTGTGTCTGGCAGACACAAGAGTATTGCAAAAGAAATTCAGATTGTTCTTCCTAATATTTCCCACTGCATATGCATGTTACAACTGATGAGGAACTTGAAGTTGAAATACAAAGACAAGCTTATTGATTCCATATTTTTTCAATGTGTCAAAGCTTACAATGTTGTAGATTTTGAATTTCAGAAACGTTAG

mRNA sequence

ATGATTTCCTGGTTGTTCAATGTATTGTCGAAAATTGCAAATGGTTTCTACGAGCATGTCGTTATGGTGAAGTTGGCAGTGACTCATAGGTTATTACAAGATTTGATGACGACCATACATAACAAATATGCTGGCACCCTTATTACTGCTTCTACACCCGATGCAAATGACCAGATTTTTCCATTAGCATTTTGCGTGGTTGATTCAGAGAATGACATGTCGTGGCAATGGTTTTTCATGCAACTGAAGCAGATTGTTGGGAATCGTAAAGATCTTGTTATTGTGTCTGGCAGACACAAGAGTATTGCAAAAGAAATTCAGATTGTTCTTCCTAATATTTCCCACTGCATATGCATGTTACAACTGATGAGGAACTTGAAGTTGAAATACAAAGACAAGCTTATTGATTCCATATTTTTTCAATGTGTCAAAGCTTACAATGTTGTAGATTTTGAATTTCAGAAACGTTAG

Coding sequence (CDS)

ATGATTTCCTGGTTGTTCAATGTATTGTCGAAAATTGCAAATGGTTTCTACGAGCATGTCGTTATGGTGAAGTTGGCAGTGACTCATAGGTTATTACAAGATTTGATGACGACCATACATAACAAATATGCTGGCACCCTTATTACTGCTTCTACACCCGATGCAAATGACCAGATTTTTCCATTAGCATTTTGCGTGGTTGATTCAGAGAATGACATGTCGTGGCAATGGTTTTTCATGCAACTGAAGCAGATTGTTGGGAATCGTAAAGATCTTGTTATTGTGTCTGGCAGACACAAGAGTATTGCAAAAGAAATTCAGATTGTTCTTCCTAATATTTCCCACTGCATATGCATGTTACAACTGATGAGGAACTTGAAGTTGAAATACAAAGACAAGCTTATTGATTCCATATTTTTTCAATGTGTCAAAGCTTACAATGTTGTAGATTTTGAATTTCAGAAACGTTAG

Protein sequence

MISWLFNVLSKIANGFYEHVVMVKLAVTHRLLQDLMTTIHNKYAGTLITASTPDANDQIFPLAFCVVDSENDMSWQWFFMQLKQIVGNRKDLVIVSGRHKSIAKEIQIVLPNISHCICMLQLMRNLKLKYKDKLIDSIFFQCVKAYNVVDFEFQKR

Homology

[Close]

BLAST of Lag0018435 vs. NCBI nr
Match: KAA0047452.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYJ98646.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 3.4e-37
Identity = 75/122 (61.48%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 37  TTIHNKYAGTLITASTPDANDQIFPLAFCVVDSENDMSWQWFFMQLKQIVGNRKDLVIVS 96
           T++ NKY GTL++ASTPDANDQIFPLAFC+VDSEND SW WF  QLK+I+G R ++VIVS
Sbjct: 22  TSLMNKYGGTLLSASTPDANDQIFPLAFCIVDSENDSSWTWFCNQLKRIIGGRNEVVIVS 81

Query: 97  GRHKSIAKEIQIVLPNISHCICMLQLMRNLKLKYKDKLIDSIF--FQCVKAYNVVDFEFQ 156
            RHKSI K I++V PN+ HC+C++ L+RNLKLKYK +++D++F  + C KA+N+V+FE +
Sbjct: 82  DRHKSICKAIEVVFPNVLHCMCLVHLLRNLKLKYK-RIVDTVFHAYACGKAFNIVNFEHE 141

[Close]

BLAST of Lag0018435 vs. NCBI nr
Match: XP_008465839.1 (PREDICTED: uncharacterized protein LOC103503433 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 3.4e-37
Identity = 75/122 (61.48%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 37  TTIHNKYAGTLITASTPDANDQIFPLAFCVVDSENDMSWQWFFMQLKQIVGNRKDLVIVS 96
           T++ NKY GTL++ASTPDANDQIFPLAFC+VDSEND SW WF  QLK+I+G R ++VIVS
Sbjct: 22  TSLMNKYGGTLLSASTPDANDQIFPLAFCIVDSENDSSWTWFCNQLKRIIGGRNEVVIVS 81

Query: 97  GRHKSIAKEIQIVLPNISHCICMLQLMRNLKLKYKDKLIDSIF--FQCVKAYNVVDFEFQ 156
            RHKSI K I++V PN+ HC+C++ L+RNLKLKYK +++D++F  + C KA+N+V+FE +
Sbjct: 82  DRHKSICKAIEVVFPNVLHCMCLVHLLRNLKLKYK-RIVDTVFHAYACGKAFNIVNFEHE 141

[Close]

BLAST of Lag0018435 vs. NCBI nr
Match: XP_008450197.1 (PREDICTED: uncharacterized protein LOC103491857 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-34
Identity = 72/120 (60.00%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 37  TTIHNKYAGTLITASTPDANDQIFPLAFCVVDSENDMSWQWFFMQLKQIVGNRKDLVIVS 96
           T++ NKY GTL++ASTPDANDQIFPLA CVVDS+ND    WF+ QLK+I+G R ++VI+S
Sbjct: 123 TSLKNKYGGTLLSASTPDANDQIFPLALCVVDSKNDSPLIWFWNQLKRIIGGRNEVVIIS 182

Query: 97  GRHKSIAKEIQIVLPNISHCICMLQLMRNLKLKYKDKLIDSIFFQCVKAYNVVDFEFQKR 156
            RHKSI K I+IV P++ HCIC++ L+RNLKLKYK +++D +F  C KA+N+VDF+ + R
Sbjct: 183 DRHKSICKAIEIVFPDVLHCICLVHLLRNLKLKYK-RIMDIVFHSCGKAFNIVDFKHKMR 241

[Close]

BLAST of Lag0018435 vs. NCBI nr
Match: XP_008446991.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-34
Identity = 72/120 (60.00%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 37  TTIHNKYAGTLITASTPDANDQIFPLAFCVVDSENDMSWQWFFMQLKQIVGNRKDLVIVS 96
           T++ NKY GTL++ STPDANDQIF LAFCVVD END SW W  +QLK+I+G+R ++VIVS
Sbjct: 54  TSMKNKYGGTLLSTSTPDANDQIFSLAFCVVDFENDSSWTWLCIQLKRIIGDRNEVVIVS 113

Query: 97  GRHKSIAKEIQIVLPNISHCICMLQLMRNLKLKYKDKLIDSIFFQCVKAYNVVDFEFQKR 156
            RHKSI K I++V PNI HC+C++ L+RN+KLKYK +++D+IF    K +N+VDFE + R
Sbjct: 114 DRHKSIYKAIKVVFPNILHCMCLVHLLRNMKLKYK-RIVDTIFHAYRKTFNIVDFEHEMR 172

[Close]

BLAST of Lag0018435 vs. NCBI nr
Match: KAA0045551.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK28842.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 4.6e-34
Identity = 72/120 (60.00%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 37  TTIHNKYAGTLITASTPDANDQIFPLAFCVVDSENDMSWQWFFMQLKQIVGNRKDLVIVS 96
           T+  NKY GTL++ASTPD+NDQIF LAFCVVDSEND SW WF  QLK+I+  + D+VIVS
Sbjct: 52  TSPKNKYGGTLLSASTPDSNDQIFRLAFCVVDSENDSSWTWFCNQLKRIICGQNDVVIVS 111

Query: 97  GRHKSIAKEIQIVLPNISHCICMLQLMRNLKLKYKDKLIDSIFFQCVKAYNVVDFEFQKR 156
            RH+SI K I++V  N+ HCIC++ L++NLKLKYK +++D++F  C KA+N+VDFE + R
Sbjct: 112 DRHRSICKAIEVVFLNVLHCICLVYLLQNLKLKYK-RIMDTLFHSCRKAFNIVDFEHEMR 170

The following BLAST results are available for this feature:

BLAST of Lag0018435 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047452.1	3.4e-37	61.48	protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYJ98646.1 prot...	[more]
XP_008465839.1	3.4e-37	61.48	PREDICTED: uncharacterized protein LOC103503433 [Cucumis melo]	[more]
XP_008450197.1	1.2e-34	60.00	PREDICTED: uncharacterized protein LOC103491857 [Cucumis melo]	[more]
XP_008446991.1	1.6e-34	60.00	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo]	[more]
KAA0045551.1	4.6e-34	60.00	protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK28842.1 prot...	[more]

BLAST of Lag0018435 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018289	MULE transposase domain	PFAM	PF10551	MULE	coord: 41..125 e-value: 3.0E-16 score: 59.7
None	No IPR available	PANTHER	PTHR31973:SF113	PROTEIN FAR1-RELATED SEQUENCE 3-LIKE	coord: 37..152
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 37..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018435.1	Lag0018435.1	mRNA