Lag0018434 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018434
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr5: 27010158 .. 27010757 (-)
RNA-Seq ExpressionLag0018434
SyntenyLag0018434
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCAATGATCAATCTAGATGGAATTCTTACAAGAAACACGTTTGGACTAAAGAAGAGGATGGTAAGTTGGTTGAGTGTCTATTAGAGTTAGCAAATCTTAGCCAATGGCGTTGTGATAATGGAACATTTAGATCGGGCTATCTACAACAAGTGGAGAAAATGATGAAGTTAAAGTTGCCTGGATGTGAGGTGAAGGCTCAACCTCACATAGAATCAAGAGTGAAACTTTTGAAGAAACAATATAATGCAATTGCAGAGATGTTAGGGCCAAATTGTAGTGGTTTTGGTTGGAATGAAAGAGAGAAGTGTATTGATTGTTCAAAAGATGTCTTTGATGATTGGGTTAAGGTATCCAAGTAAATATGATATTCTATTTTTCTTTACATTCCATAATATTATTTTAGTTATTAATATAACATTACATACATTTTGTTGTAGAGTCACCCCACAGCAAAAGGATTGCGAAACAAGTCATTAACATACTTAGACGAGATGGCAATAATATTTGGCAAAGATCTAGCTAATGGCCTAGGAGCTGAAGCGCCAGGAGATATGTCTGAAAGAATAGGCATAGAGACAAGTCATGAGATCTGA

mRNA sequence

ATGGAAGTCAATGATCAATCTAGATGGAATTCTTACAAGAAACACGTTTGGACTAAAGAAGAGGATGGTAAGTTGGTTGAGTGTCTATTAGAGTTAGCAAATCTTAGCCAATGGCGTTGTGATAATGGAACATTTAGATCGGGCTATCTACAACAAGTGGAGAAAATGATGAAGTTAAAGTTGCCTGGATGTGAGGTGAAGGCTCAACCTCACATAGAATCAAGAGTGAAACTTTTGAAGAAACAATATAATGCAATTGCAGAGATGTTAGGGCCAAATTGTAGTGGTTTTGGTTGGAATGAAAGAGAGAAGTGTATTGATTGTTCAAAAGATGTCTTTGATGATTGGGTTAAGAGTCACCCCACAGCAAAAGGATTGCGAAACAAGTCATTAACATACTTAGACGAGATGGCAATAATATTTGGCAAAGATCTAGCTAATGGCCTAGGAGCTGAAGCGCCAGGAGATATGTCTGAAAGAATAGGCATAGAGACAAGTCATGAGATCTGA

Coding sequence (CDS)

ATGGAAGTCAATGATCAATCTAGATGGAATTCTTACAAGAAACACGTTTGGACTAAAGAAGAGGATGGTAAGTTGGTTGAGTGTCTATTAGAGTTAGCAAATCTTAGCCAATGGCGTTGTGATAATGGAACATTTAGATCGGGCTATCTACAACAAGTGGAGAAAATGATGAAGTTAAAGTTGCCTGGATGTGAGGTGAAGGCTCAACCTCACATAGAATCAAGAGTGAAACTTTTGAAGAAACAATATAATGCAATTGCAGAGATGTTAGGGCCAAATTGTAGTGGTTTTGGTTGGAATGAAAGAGAGAAGTGTATTGATTGTTCAAAAGATGTCTTTGATGATTGGGTTAAGAGTCACCCCACAGCAAAAGGATTGCGAAACAAGTCATTAACATACTTAGACGAGATGGCAATAATATTTGGCAAAGATCTAGCTAATGGCCTAGGAGCTGAAGCGCCAGGAGATATGTCTGAAAGAATAGGCATAGAGACAAGTCATGAGATCTGA

Protein sequence

MEVNDQSRWNSYKKHVWTKEEDGKLVECLLELANLSQWRCDNGTFRSGYLQQVEKMMKLKLPGCEVKAQPHIESRVKLLKKQYNAIAEMLGPNCSGFGWNEREKCIDCSKDVFDDWVKSHPTAKGLRNKSLTYLDEMAIIFGKDLANGLGAEAPGDMSERIGIETSHEI
Homology
BLAST of Lag0018434 vs. NCBI nr
Match: CAD1831704.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 218.4 bits (555), Expect = 4.7e-53
Identity = 96/152 (63.16%), Postives = 115/152 (75.66%), Query Frame = 0

Query: 10  NSYKKHVWTKEEDGKLVECLLELANLSQWRCDNGTFRSGYLQQVEKMMKLKLPGCEVKAQ 69
           N   KH WTKEED KL+ECLLEL     W+ DNGTFR+GYLQQ+EK M  +LPGC++K  
Sbjct: 14  NKGLKHQWTKEEDEKLIECLLELTTSGNWKADNGTFRNGYLQQLEKWMHERLPGCQLKGV 73

Query: 70  PHIESRVKLLKKQYNAIAEMLGPNCSGFGWNEREKCIDCSKDVFDDWVKSHPTAKGLRNK 129
           PHIESR KL K+QYNAI+EMLGP  SGFGWN+ EKCI C K VFD WVKSHPTA GLR K
Sbjct: 74  PHIESRFKLWKRQYNAISEMLGPAASGFGWNDAEKCIICEKTVFDAWVKSHPTAAGLRGK 133

Query: 130 SLTYLDEMAIIFGKDLANGLGAEAPGDMSERI 162
           S  YL++++++FGKD A G GAE+  D +  +
Sbjct: 134 SFPYLEQLSVVFGKDCATGAGAESAADAARNV 165

BLAST of Lag0018434 vs. NCBI nr
Match: XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])

HSP 1 Score: 218.4 bits (555), Expect = 4.7e-53
Identity = 97/157 (61.78%), Postives = 123/157 (78.34%), Query Frame = 0

Query: 13  KKHVWTKEEDGKLVECLLELANLSQWRCDNGTFRSGYLQQVEKMMKLKLPGCEVKAQPHI 72
           +KH WT  ED KLVECLL++AN  +W+ DNGTF+ GYLQQ+EKMM  K+P C +KAQPHI
Sbjct: 53  RKHQWTTLEDSKLVECLLDMANSGKWKADNGTFKPGYLQQLEKMMNEKIPQCGLKAQPHI 112

Query: 73  ESRVKLLKKQYNAIAEMLGPNCSGFGWNEREKCIDCSKDVFDDWVKSHPTAKGLRNKSLT 132
           +SRVK+LKKQY+AI+EMLGP  SGFGWN+++KC+   KDVFD+WVKSHP+AKGLRNK   
Sbjct: 113 DSRVKILKKQYHAISEMLGPAGSGFGWNDKDKCVVVEKDVFDEWVKSHPSAKGLRNKPFP 172

Query: 133 YLDEMAIIFGKDLANGLGAEAPGDMSERIGIETSHEI 170
           Y DE+ ++FG D ANG GA    DM + I  ET +++
Sbjct: 173 YHDELGLVFGNDRANGQGAMGLTDMVDDIDKETVNDL 209

BLAST of Lag0018434 vs. NCBI nr
Match: XP_020101014.1 (uncharacterized protein LOC109718933 isoform X1 [Ananas comosus] >XP_020101016.1 uncharacterized protein LOC109718933 isoform X1 [Ananas comosus])

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 95/154 (61.69%), Postives = 120/154 (77.92%), Query Frame = 0

Query: 14  KHVWTKEEDGKLVECLLELANLSQWRCDNGTFRSGYLQQVEKMMKLKLPGCEVKAQPHIE 73
           KH WTK ED KL+ECLL+L+N  QWR DNGTFR+GYLQQ+E+ M  K+P CE+K  PHIE
Sbjct: 40  KHQWTKHEDEKLIECLLDLSNSGQWRADNGTFRNGYLQQLERWMHEKIPDCELKGVPHIE 99

Query: 74  SRVKLLKKQYNAIAEMLGPNCSGFGWNEREKCIDCSKDVFDDWVKSHPTAKGLRNKSLTY 133
           SR KL K+QYNAI EMLGP+ SGFGW+++ KC++C K+V+D+WVKSHP A GLR KS  Y
Sbjct: 100 SRFKLWKRQYNAIFEMLGPSASGFGWSDKNKCVECDKNVYDNWVKSHPNAVGLRGKSFPY 159

Query: 134 LDEMAIIFGKDLANGLGAEAPGDMSERI-GIETS 167
            +E++I+FGKD A G+ AE+P D    I G ET+
Sbjct: 160 FEELSIVFGKDRATGIAAESPADAVANIEGEETN 193

BLAST of Lag0018434 vs. NCBI nr
Match: XP_020101017.1 (uncharacterized protein LOC109718933 isoform X2 [Ananas comosus] >XP_020101018.1 uncharacterized protein LOC109718933 isoform X2 [Ananas comosus])

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 95/154 (61.69%), Postives = 120/154 (77.92%), Query Frame = 0

Query: 14  KHVWTKEEDGKLVECLLELANLSQWRCDNGTFRSGYLQQVEKMMKLKLPGCEVKAQPHIE 73
           KH WTK ED KL+ECLL+L+N  QWR DNGTFR+GYLQQ+E+ M  K+P CE+K  PHIE
Sbjct: 18  KHQWTKHEDEKLIECLLDLSNSGQWRADNGTFRNGYLQQLERWMHEKIPDCELKGVPHIE 77

Query: 74  SRVKLLKKQYNAIAEMLGPNCSGFGWNEREKCIDCSKDVFDDWVKSHPTAKGLRNKSLTY 133
           SR KL K+QYNAI EMLGP+ SGFGW+++ KC++C K+V+D+WVKSHP A GLR KS  Y
Sbjct: 78  SRFKLWKRQYNAIFEMLGPSASGFGWSDKNKCVECDKNVYDNWVKSHPNAVGLRGKSFPY 137

Query: 134 LDEMAIIFGKDLANGLGAEAPGDMSERI-GIETS 167
            +E++I+FGKD A G+ AE+P D    I G ET+
Sbjct: 138 FEELSIVFGKDRATGIAAESPADAVANIEGEETN 171

BLAST of Lag0018434 vs. NCBI nr
Match: CAD1825870.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 95/154 (61.69%), Postives = 120/154 (77.92%), Query Frame = 0

Query: 14  KHVWTKEEDGKLVECLLELANLSQWRCDNGTFRSGYLQQVEKMMKLKLPGCEVKAQPHIE 73
           KH WTK ED KL+ECLL+L+N  QWR DNGTFR+GYLQQ+E+ M  K+P CE+K  PHIE
Sbjct: 40  KHQWTKHEDEKLIECLLDLSNSGQWRADNGTFRNGYLQQLERWMHEKIPDCELKGVPHIE 99

Query: 74  SRVKLLKKQYNAIAEMLGPNCSGFGWNEREKCIDCSKDVFDDWVKSHPTAKGLRNKSLTY 133
           SR KL K+QYNAI EMLGP+ SGFGW+++ KC++C K+V+D+WVKSHP A GLR KS  Y
Sbjct: 100 SRFKLWKRQYNAIFEMLGPSASGFGWSDKNKCVECDKNVYDNWVKSHPNAVGLRGKSFPY 159

Query: 134 LDEMAIIFGKDLANGLGAEAPGDMSERI-GIETS 167
            +E++I+FGKD A G+ AE+P D    I G ET+
Sbjct: 160 FEELSIVFGKDRATGIAAESPADAVANIEGEETN 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAD1831704.14.7e-5363.16unnamed protein product [Ananas comosus var. bracteatus][more]
XP_024022021.14.7e-5361.78uncharacterized protein LOC112091787 [Morus notabilis][more]
XP_020101014.11.4e-5261.69uncharacterized protein LOC109718933 isoform X1 [Ananas comosus] >XP_020101016.1... [more]
XP_020101017.11.4e-5261.69uncharacterized protein LOC109718933 isoform X2 [Ananas comosus] >XP_020101018.1... [more]
CAD1825870.11.4e-5261.69unnamed protein product [Ananas comosus var. bracteatus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 17..114
e-value: 8.4E-9
score: 36.3
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 10..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018434.1Lag0018434.1mRNA