Lag0018433 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018433
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMyb/SANT-like domain containing protein
Locationchr5: 27009540 .. 27010109 (-)
RNA-Seq ExpressionLag0018433
SyntenyLag0018433
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAAACAGGTGTTGATGATCAGGTGGATTCTATGTCCATGGATGAGCCTGATTCAAGCCTTCCAACTCAATCTAATACTTCTCGCAAATTATCAAAGAAAAAGGTAAGGAATGGAGATAAATTAGTTGAAATTGTGACTACATCTTTGGATAACATGGGTGTGATGTATGAGAAAACAACTGAAAACATCGGAAAGATAGCTAAGTATTTTGAAACTCAAACTGTTGTTTCTGAAAGGAGAACTCATATATTTACTGAGCTTGTAGATGTTGAAGGGCTAACAGATGCTCAAAGAGTTCGAGCAGGTGCACTTTTAGCAAAGGATCATGATCAGACCCATTATTTATTTATGATGCCACATTCTTATAGAGGGAATTTATATTACAATTGTTGGCAGGACAAAGTTAATTCATAGGTAGACATGATTCATTTTGTGTCAAGAAGGATTTTTTTTTCTAGTTTTTCTTGTTTTTTGTTTTGTTTCTTATTTGTAGAAAGAACTCTAGAGTGTAACTCAAGATTCAATCTAGTTGTTTCAAGTGGTCATAGTTGTTTGAAGAGCTAG

mRNA sequence

ATGTCTCAAACAGGTGTTGATGATCAGGTGGATTCTATGTCCATGGATGAGCCTGATTCAAGCCTTCCAACTCAATCTAATACTTCTCGCAAATTATCAAAGAAAAAGGTAAGGAATGGAGATAAATTAGTTGAAATTGTGACTACATCTTTGGATAACATGGGTGTGATGTATGAGAAAACAACTGAAAACATCGGAAAGATAGCTAAGTATTTTGAAACTCAAACTGTTGTTTCTGAAAGGAGAACTCATATATTTACTGAGCTTGTAGATGTTGAAGGGCTAACAGATGCTCAAAGAGTTCGAGCAGAAAGAACTCTAGAGTGTAACTCAAGATTCAATCTAGTTGTTTCAAGTGGTCATAGTTGTTTGAAGAGCTAG

Coding sequence (CDS)

ATGTCTCAAACAGGTGTTGATGATCAGGTGGATTCTATGTCCATGGATGAGCCTGATTCAAGCCTTCCAACTCAATCTAATACTTCTCGCAAATTATCAAAGAAAAAGGTAAGGAATGGAGATAAATTAGTTGAAATTGTGACTACATCTTTGGATAACATGGGTGTGATGTATGAGAAAACAACTGAAAACATCGGAAAGATAGCTAAGTATTTTGAAACTCAAACTGTTGTTTCTGAAAGGAGAACTCATATATTTACTGAGCTTGTAGATGTTGAAGGGCTAACAGATGCTCAAAGAGTTCGAGCAGAAAGAACTCTAGAGTGTAACTCAAGATTCAATCTAGTTGTTTCAAGTGGTCATAGTTGTTTGAAGAGCTAG

Protein sequence

MSQTGVDDQVDSMSMDEPDSSLPTQSNTSRKLSKKKVRNGDKLVEIVTTSLDNMGVMYEKTTENIGKIAKYFETQTVVSERRTHIFTELVDVEGLTDAQRVRAERTLECNSRFNLVVSSGHSCLKS
Homology
BLAST of Lag0018433 vs. NCBI nr
Match: PON99940.1 (hypothetical protein TorRG33x02_043580 [Trema orientale])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 20  SSLPTQSNTSRKLSKKKVRNGDKLVEIVTTSLDNMGVMYEKTTENIGKIAKYFETQTVVS 79
           SS P  S  S K S+K+ RN D LV+++T +L      +   +ENI K AKYF+ +   +
Sbjct: 38  SSTPIDSTQSGKKSRKRARNKDPLVDVLTKTLKEFSNTHAVASENIRKNAKYFQNEADGA 97

Query: 80  ERRTHIFTELVDVEGLTDAQRVRAERTL 108
            RR  +F EL  V+GLT+AQRV+  + L
Sbjct: 98  NRRMKLFDELKKVDGLTNAQRVKVGQLL 125

BLAST of Lag0018433 vs. NCBI nr
Match: KAF3950503.1 (hypothetical protein CMV_023756 [Castanea mollissima])

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-07
Identity = 30/93 (32.26%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 20  SSLPTQSNTSRKLSKKKVRNGDKLVEIVTTSLDNMGVMYEKTTENIGKIAKYFETQTVVS 79
           + +P Q ++S+ L+KK+ R+ D+L+E +  ++ + G  YE+T  ++  IA  F+ ++  +
Sbjct: 194 TQIPNQGSSSKNLNKKRPRSNDELIETLMETMKDFGKKYEETNGHMATIASCFKIESEEA 253

Query: 80  ERRTHIFTELVDVEGLTDAQRVRAERTLECNSR 113
           ERR  +F EL+ +EGL+ ++R++A   L  ++R
Sbjct: 254 ERRMKVFNELLKIEGLSISERIKAGELLTADTR 286

BLAST of Lag0018433 vs. NCBI nr
Match: KAF3950504.1 (hypothetical protein CMV_023756 [Castanea mollissima])

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-07
Identity = 30/93 (32.26%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 20  SSLPTQSNTSRKLSKKKVRNGDKLVEIVTTSLDNMGVMYEKTTENIGKIAKYFETQTVVS 79
           + +P Q ++S+ L+KK+ R+ D+L+E +  ++ + G  YE+T  ++  IA  F+ ++  +
Sbjct: 196 TQIPNQGSSSKNLNKKRPRSNDELIETLMETMKDFGKKYEETNGHMATIASCFKIESEEA 255

Query: 80  ERRTHIFTELVDVEGLTDAQRVRAERTLECNSR 113
           ERR  +F EL+ +EGL+ ++R++A   L  ++R
Sbjct: 256 ERRMKVFNELLKIEGLSISERIKAGELLTADTR 288

BLAST of Lag0018433 vs. NCBI nr
Match: XP_024029924.1 (uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029925.1 uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029927.1 uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029928.1 uncharacterized protein LOC21412682 [Morus notabilis])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 0

Query: 7   DDQVDSMSMDEPDSSLPTQSNTSRKLSKKKVRNGDKLVEIVTTSLDNMGVMYEKTTENIG 66
           D+ +D+ S+  P     +    S +  +K+ + GD LV+ +T ++     MY    ENIG
Sbjct: 90  DENMDTASIGGPSIQTTSTPLASGRKKRKRSQCGDVLVDALTETVHKFSDMYAMAGENIG 149

Query: 67  KIAKYFETQTVVSERRTHIFTELVDVEGLTDAQRVRAERTLECNSRFN 115
           ++A  F+ +   + RR  +F E+  VEGLT+AQRVR  + L  N  +N
Sbjct: 150 RLANCFQYEADGAARRIQVFDEVKKVEGLTNAQRVRVGKLLVQNHDYN 197

BLAST of Lag0018433 vs. NCBI nr
Match: XP_024030261.1 (uncharacterized protein LOC112094190 [Morus notabilis])

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 34/101 (33.66%), Postives = 57/101 (56.44%), Query Frame = 0

Query: 10  VDSMSMDEPDSSLPTQSNTSRKLSKKKVRNGDKLVEIVTTSLDNMGVMYEKTTENIGKIA 69
           +D+ S+  P +   +   TS +  +K+ ++ D LV+ +T ++     MY    ENIG++A
Sbjct: 49  MDTASIGGPSTQSSSTPLTSGRKKRKRSQSEDVLVDALTETIHKFSNMYAMAGENIGRLA 108

Query: 70  KYFETQTVVSERRTHIFTELVDVEGLTDAQRVRAERTLECN 111
             F+ +   + RR  +F E+  VEGLT+AQRVR  + L  N
Sbjct: 109 NCFQYEADSAARRMQVFDEVKKVEGLTNAQRVRVGKLLVQN 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON99940.13.8e-0742.05hypothetical protein TorRG33x02_043580 [Trema orientale][more]
KAF3950503.15.0e-0732.26hypothetical protein CMV_023756 [Castanea mollissima][more]
KAF3950504.15.0e-0732.26hypothetical protein CMV_023756 [Castanea mollissima][more]
XP_024029924.12.1e-0533.33uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029925.1 uncharacte... [more]
XP_024030261.11.0e-0433.66uncharacterized protein LOC112094190 [Morus notabilis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018433.1Lag0018433.1mRNA