Lag0018423 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018423
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr5: 26516641 .. 26516943 (+)
RNA-Seq ExpressionLag0018423
SyntenyLag0018423
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAAAAGGTGGCAAGGAAGGTGCAGCCCCGTGGGGGAGAACCTTCTTCGTCAAGAGTTAAGAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAAGTTCAACGACATCAACCTGAGAGGCAGGCTCCTATTATACCCCTGTGCAACGTGTGCAACAAACACCACGTGGGTCAATGTGACACGGGTGAAAAAGTCTGTTTCAAGTGTGGAAAGGTAGGTCACTATGCGAAGTGGTGTCCCACCAAAGGCGAGCCTAATCAAGAGAAGCCAGTTTTGAGAGCCCCTCAGTTTTGA

mRNA sequence

ATGGATAAAAAGGTGGCAAGGAAGGTGCAGCCCCGTGGGGGAGAACCTTCTTCGTCAAGAGTTAAGAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAAGTTCAACGACATCAACCTGAGAGGCAGGCTCCTATTATACCCCTGTGCAACGTGTGCAACAAACACCACGTGGGTCAATGTGACACGGGTGAAAAAGTCTGTTTCAAGTGTGGAAAGGTAGGTCACTATGCGAAGTGGTGTCCCACCAAAGGCGAGCCTAATCAAGAGAAGCCAGTTTTGAGAGCCCCTCAGTTTTGA

Coding sequence (CDS)

ATGGATAAAAAGGTGGCAAGGAAGGTGCAGCCCCGTGGGGGAGAACCTTCTTCGTCAAGAGTTAAGAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAAGTTCAACGACATCAACCTGAGAGGCAGGCTCCTATTATACCCCTGTGCAACGTGTGCAACAAACACCACGTGGGTCAATGTGACACGGGTGAAAAAGTCTGTTTCAAGTGTGGAAAGGTAGGTCACTATGCGAAGTGGTGTCCCACCAAAGGCGAGCCTAATCAAGAGAAGCCAGTTTTGAGAGCCCCTCAGTTTTGA

Protein sequence

MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQF
Homology
BLAST of Lag0018423 vs. NCBI nr
Match: XP_022156326.1 (uncharacterized protein LOC111023247 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-08
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 1   MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVG 60
           MDK V+ K  P     SSS VKRK P    +   +  + Q + Q  + P+C  C K H G
Sbjct: 207 MDKDVSNKASPLPEVGSSSGVKRKFPSTYADLVLRAPQRQAQHQG-MPPVCPTCQKRHTG 266

Query: 61  QCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ 91
           QC TG K CF+CG+ GH+A+ CP      Q
Sbjct: 267 QCWTGSKGCFRCGREGHFARECPMSAANTQ 295

BLAST of Lag0018423 vs. NCBI nr
Match: XP_022159077.1 (uncharacterized protein LOC111025517 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-07
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 1   MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVG 60
           MD  V+  VQP     SSS VKRK  P   +QP +  + +P +Q  + P+C  C K   G
Sbjct: 134 MDNDVSNSVQPLVEVGSSSGVKRKVSPAYADQPFRAPQ-RPAQQQGLPPVCPSCQKRQAG 193

Query: 61  QCDTGEKVCFKCGKVGHYAKWC 83
           QC TG + CF+CG+ GH+A+ C
Sbjct: 194 QCWTGNRGCFRCGREGHFAREC 214

BLAST of Lag0018423 vs. NCBI nr
Match: XP_022155000.1 (uncharacterized protein LOC111022144 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 0

Query: 1   MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVG 60
           MDK V+ K        SSS VKRK  P   +   +  +HQ + +  + P+C  C K H G
Sbjct: 180 MDKDVSNKAPSLPEVGSSSGVKRKFHPTYADPSLRAPQHQAQHRG-MPPVCPTCQKRHAG 239

Query: 61  QCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ 91
           QC TG K CF+CG+  H+A+ CP      Q
Sbjct: 240 QCWTGSKGCFRCGRERHFARECPMSAANTQ 268

BLAST of Lag0018423 vs. NCBI nr
Match: XP_022155872.1 (uncharacterized protein LOC111022885 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 1   MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVG 60
           MDK V+ +VQP     SSS VKRK  P   +QP +  + +P +Q  + P+C  C K + G
Sbjct: 118 MDKDVSNRVQPLVEVGSSSGVKRKVSPAYADQPFRAPQ-RPAQQQGLPPVCPSCQKRNAG 177

Query: 61  QCDTGEKVCFKCGKVGHYAKWC 83
           QC TG   CF+C + GH+A+ C
Sbjct: 178 QCWTGTGGCFRCRREGHFAREC 198

BLAST of Lag0018423 vs. NCBI nr
Match: XP_022149380.1 (uncharacterized protein LOC111017810 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 17  SSSRVKRKPPPVMENQPQKVQRHQPERQ-APIIPLCNVCNKHHVGQCDTGEKVCFKCGKV 76
           SSS VKRK      +Q  +  +H  +RQ AP  P+C  C K HVG C  G+++CFKC K 
Sbjct: 239 SSSGVKRKFASFSSSQRSRGHQHHVQRQTAP--PVCPSCKKSHVGPCWLGKRICFKCQKE 298

Query: 77  GHYAKWCPTKGEPNQ 91
           GH+A+ CP  G   Q
Sbjct: 299 GHFARECPMTGSNTQ 311

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156326.16.1e-0841.11uncharacterized protein LOC111023247 [Momordica charantia][more]
XP_022159077.14.0e-0742.68uncharacterized protein LOC111025517 [Momordica charantia][more]
XP_022155000.11.5e-0638.89uncharacterized protein LOC111022144 [Momordica charantia][more]
XP_022155872.11.5e-0642.68uncharacterized protein LOC111022885 [Momordica charantia][more]
XP_022149380.13.4e-0645.33uncharacterized protein LOC111017810 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 68..84
e-value: 5.7E-4
score: 29.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 68..83
e-value: 5.1E-6
score: 26.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 69..83
score: 10.229617
NoneNo IPR availableGENE3D4.10.60.10coord: 60..99
e-value: 2.0E-8
score: 36.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 49..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018423.1Lag0018423.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding