Lag0018401 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018401
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein FAR-RED ELONGATED HYPOCOTYL 3-like
Locationchr5: 25958794 .. 25959159 (+)
RNA-Seq ExpressionLag0018401
SyntenyLag0018401
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTTTGGAAAAAGCAGAGGAGAAGTCACGGAAGCACGTGGTCAAACCTATTGCTCGATATGAGTTTGATGTCGATGACGGACATTTGGGTGGACGCGCCAACCTTCACGCTAGAACATGCACCTGTCATGAATTTGAGTATTACGAACCTTCATGCTCCCATGCGATCACTGCATGCACTTATCGACATATAGACTATCATACACTTTGTTCTAGAGTCTACCATGTGGACTCTTTGATAGATGCATATGCACAACCCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGAGTTGGTCGTCGTTAG

mRNA sequence

ATGGAAATTTTGGAAAAAGCAGAGGAGAAGTCACGGAAGCACGTGGTCAAACCTATTGCTCGATATGAGTTTGATGTCGATGACGGACATTTGGGTGGACGCGCCAACCTTCACGCTAGAACATGCACCTGTCATGAATTTGAGTATTACGAACCTTCATGCTCCCATGCGATCACTGCATGCACTTATCGACATATAGACTATCATACACTTTGTTCTAGAGTCTACCATGTGGACTCTTTGATAGATGCATATGCACAACCCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGAGTTGGTCGTCGTTAG

Coding sequence (CDS)

ATGGAAATTTTGGAAAAAGCAGAGGAGAAGTCACGGAAGCACGTGGTCAAACCTATTGCTCGATATGAGTTTGATGTCGATGACGGACATTTGGGTGGACGCGCCAACCTTCACGCTAGAACATGCACCTGTCATGAATTTGAGTATTACGAACCTTCATGCTCCCATGCGATCACTGCATGCACTTATCGACATATAGACTATCATACACTTTGTTCTAGAGTCTACCATGTGGACTCTTTGATAGATGCATATGCACAACCCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGAGTTGGTCGTCGTTAG

Protein sequence

MEILEKAEEKSRKHVVKPIARYEFDVDDGHLGGRANLHARTCTCHEFEYYEPSCSHAITACTYRHIDYHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFVDVEVLPPRRVPRVGRR
Homology
BLAST of Lag0018401 vs. NCBI nr
Match: XP_038890792.1 (uncharacterized protein LOC120080248 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-34
Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = 0

Query: 1   MEILEKAEEKSRKHVVKPIARYEFDVDDGHLGGRANLHARTCTCHEFEYYEPSCSHAITA 60
           M I+  A  K+ KH V+PI ++EF+V DG LGGR N+HARTCTC +F+YYE SCSHAI A
Sbjct: 1   MAIIRDATNKASKHEVRPIDQHEFEVIDGGLGGRVNIHARTCTCRKFDYYEISCSHAIAA 60

Query: 61  CTYRHIDYHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFVDVEVLPPRRVPR 118
           C  R+ID  + CS VY +D+++ AYA+PI+PLGH  EWK+S  FVDVE LPP+RVPR
Sbjct: 61  CRVRNIDSTSFCSWVYSIDAMLAAYAEPIRPLGHFLEWKQSLAFVDVETLPPKRVPR 117

BLAST of Lag0018401 vs. NCBI nr
Match: XP_038904373.1 (uncharacterized protein LOC120090731 [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 4.0e-30
Identity = 64/120 (53.33%), Postives = 90/120 (75.00%), Query Frame = 0

Query: 1   MEILEKAEEKSRKHVVKPIARYEFDVDDGHLGGRANLHARTCTCHEFEYYEPSCSHAITA 60
           M I+  A +K+ ++ V+PI +YEF+V +G L GR N+H RTCTC +F+YY+  CSHAI A
Sbjct: 1   MIIILDAADKASRYEVRPIDQYEFEVINGGLEGRVNIHTRTCTCRKFDYYKIPCSHAIAA 60

Query: 61  CTYRHIDYHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFVDVEVLPPRRVPRVGR 120
           C  ++ID  +LCS VY +D+++ AYA+P++ LGH  EWK+S  FVDVE LPP+RV R+GR
Sbjct: 61  CRVQNIDPTSLCSWVYSIDAILAAYAEPVRSLGHFLEWKQSSAFVDVETLPPKRVTRIGR 120

BLAST of Lag0018401 vs. NCBI nr
Match: XP_038895917.1 (uncharacterized protein LOC120084090 [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 5.8e-29
Identity = 63/120 (52.50%), Postives = 88/120 (73.33%), Query Frame = 0

Query: 1   MEILEKAEEKSRKHVVKPIARYEFDVDDGHLGGRANLHARTCTCHEFEYYEPSCSHAITA 60
           M I   A +K+ +H V+PI ++EF++ DG L GRAN+H R CTC +F+YYE  CSH I A
Sbjct: 15  MTITRDATDKASRHEVRPIDQHEFEMIDGGLRGRANIHTRICTCLKFDYYEIPCSHVIAA 74

Query: 61  CTYRHIDYHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFVDVEVLPPRRVPRVGR 120
           C  ++ID  +LCS VY ++S++ AYA+PI+  GH S WK+S  F++VE LPP+RVPR+GR
Sbjct: 75  CRVQNIDPISLCSWVYSIESVLAAYAEPIRLAGHFSGWKQSSTFINVETLPPKRVPRLGR 134

BLAST of Lag0018401 vs. NCBI nr
Match: XP_022156122.1 (uncharacterized protein LOC111023087 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-26
Identity = 59/120 (49.17%), Postives = 87/120 (72.50%), Query Frame = 0

Query: 2   EILEKAEEKSRKHVVKPIARYEFDVDDGHLGGRANLHARTCTCHEFEYYEPSCSHAITAC 61
           E++ KA + +R+H+V  I ++ F+V DG+L G  +L ++TCTC EF+Y++ SCS AI A 
Sbjct: 274 EMIAKASDNARRHIVMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVSCSDAIAAA 333

Query: 62  TYRHIDYHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFVDVEVLPPRRVPRVGRR 121
           + R I+ +TLC  VY V+S + AYA+PI P+G  S WK SP FV+++V PP++V RVGRR
Sbjct: 334 SSRSINPYTLCDEVYTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVRVGRR 393

BLAST of Lag0018401 vs. NCBI nr
Match: XP_022154803.1 (uncharacterized protein LOC111021969 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-25
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0

Query: 3   ILEKAEEKSRKHVVKPIARYEFDVDDGHLGGRANLHARTCTCHEFEYYEPSCSHAITACT 62
           IL++  E++R H V+PI R+EF+V DG    R N++++TCTC +F YYE  CSHAI    
Sbjct: 686 ILKEVAEQARYHHVRPIDRFEFEVHDGATKVRVNINSKTCTCKQFYYYEIPCSHAIAGAV 745

Query: 63  YRHIDYHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFVDVEVLPPRRVPRVGR 121
            R+I  HTLCS  Y +D+LI AY +P+ PLG E +W     +V   + PPR VPRVGR
Sbjct: 746 LRNISVHTLCSDRYRIDTLIQAYVEPVYPLGDEEDWILPYDYVPTTIQPPRFVPRVGR 803

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038890792.13.5e-3460.68uncharacterized protein LOC120080248 [Benincasa hispida][more]
XP_038904373.14.0e-3053.33uncharacterized protein LOC120090731 [Benincasa hispida][more]
XP_038895917.15.8e-2952.50uncharacterized protein LOC120084090 [Benincasa hispida][more]
XP_022156122.13.5e-2649.17uncharacterized protein LOC111023087 [Momordica charantia][more]
XP_022154803.11.8e-2549.15uncharacterized protein LOC111021969 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 40..67
e-value: 4.2E-4
score: 29.5
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 40..63
e-value: 1.1E-4
score: 21.8
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 22..65
score: 8.666616

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018401.1Lag0018401.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding