Lag0018373 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018373
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein FAR1-RELATED SEQUENCE 4-like
Locationchr5: 24990753 .. 24991558 (+)
RNA-Seq ExpressionLag0018373
SyntenyLag0018373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAAATGGAGGATATAGTTCCTTCCATTAGGTCTGAATTAGAAGAAGTAGCACATTCTAAATGGGCGAGGGCATTTTTTGTGAGGAACAAATATACCATAATGACAACAAATGCATCTGAGAGTCTTAATGCAATTTTGTTGGAGGCGCGTGAGCTACCTGTTGTTCCCCTTCTCGAGGCCATACGAAGATTGATTCAACAATGGTTCTATGATCGTCGGAGTTTTTTCAGTTTCCAACGTGCTCACCCTTCGCCATGGGTTGAGGATCTGCTTCGTACATCCCTGAAGGAAAAACGAACAATGGATGTGAGTTTTGTTTCATTCTACTTCTTTTGGTACTTACACTTCTGTATTTCTATATTTCTAATGGTCAGTTTTTTTAAAATTTTTAGCTATATCACATAAACCAACATGAATTTGAAGAACATGATCGCACAATGCAATTCGAGGTCAACATTCTTACCAAGAGTTGCTCATGTCGACGATGGAATTTGGATCTGATGCCATGCCCACATGCATGTCTGGTTTTGTGTCGTCGAAACCTTGGGCTTCATTCATAATGTCATGAGTTTTTCCAAACTTCCAATTTAGTGCAATTACACAGTAATGATGTACATCCAATTGGAACTGTTAAACAATTCCCCAACTCAAATGTTGATGAGGAGGATTGCATTCTCCCGCCAAGCACTAAGCGAACAGCTGCACGTCCGAAGAAAAAACGGATTTTGTCTCGTTTTGATAGGACAACATCCTTCAAGTGCGGGCGTTGTGGTCAAATTGTGTTGGGTTTTATGCCCTAA

mRNA sequence

ATGAGGCAAATGGAGGATATAGTTCCTTCCATTAGGTCTGAATTAGAAGAAGTAGCACATTCTAAATGGGCGAGGGCATTTTTTGTGAGGAACAAATATACCATAATGACAACAAATGCATCTGAGAGTCTTAATGCAATTTTGTTGGAGGCGCGTGAGCTACCTGTTGTTCCCCTTCTCGAGGCCATACGAAGATTGATTCAACAATGGTTCTATGATCGTCGGAGTTTTTTCAGTTTCCAACGTGCTCACCCTTCGCCATGGGTTGAGGATCTGCTTCGTACATCCCTGAAGGAAAAACGAACAATGGATGTGAGTTTTGTTTCATTCTACTTCTTTTGTAATGATGTACATCCAATTGGAACTGTTAAACAATTCCCCAACTCAAATGTTGATGAGGAGGATTGCATTCTCCCGCCAAGCACTAAGCGAACAGCTGCACGTCCGAAGAAAAAACGGATTTTGTCTCGTTTTGATAGGACAACATCCTTCAAGTGCGGGCGTTGTGGTCAAATTGTGTTGGGTTTTATGCCCTAA

Coding sequence (CDS)

ATGAGGCAAATGGAGGATATAGTTCCTTCCATTAGGTCTGAATTAGAAGAAGTAGCACATTCTAAATGGGCGAGGGCATTTTTTGTGAGGAACAAATATACCATAATGACAACAAATGCATCTGAGAGTCTTAATGCAATTTTGTTGGAGGCGCGTGAGCTACCTGTTGTTCCCCTTCTCGAGGCCATACGAAGATTGATTCAACAATGGTTCTATGATCGTCGGAGTTTTTTCAGTTTCCAACGTGCTCACCCTTCGCCATGGGTTGAGGATCTGCTTCGTACATCCCTGAAGGAAAAACGAACAATGGATGTGAGTTTTGTTTCATTCTACTTCTTTTGTAATGATGTACATCCAATTGGAACTGTTAAACAATTCCCCAACTCAAATGTTGATGAGGAGGATTGCATTCTCCCGCCAAGCACTAAGCGAACAGCTGCACGTCCGAAGAAAAAACGGATTTTGTCTCGTTTTGATAGGACAACATCCTTCAAGTGCGGGCGTTGTGGTCAAATTGTGTTGGGTTTTATGCCCTAA

Protein sequence

MRQMEDIVPSIRSELEEVAHSKWARAFFVRNKYTIMTTNASESLNAILLEARELPVVPLLEAIRRLIQQWFYDRRSFFSFQRAHPSPWVEDLLRTSLKEKRTMDVSFVSFYFFCNDVHPIGTVKQFPNSNVDEEDCILPPSTKRTAARPKKKRILSRFDRTTSFKCGRCGQIVLGFMP
Homology
BLAST of Lag0018373 vs. NCBI nr
Match: XP_022157216.1 (uncharacterized protein LOC111023978 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-35
Identity = 87/233 (37.34%), Postives = 126/233 (54.08%), Query Frame = 0

Query: 1   MRQMEDIVPSIRSELEEVAHSKWARAFFVRNKYTIMTTNASESLNAILLEARELPVVPLL 60
           MR +E +VP IR EL+E+ + KWARAF  +N++ +MTTN SES+N+   EARELPV+ LL
Sbjct: 1   MRHLEQVVPEIREELQEIGYEKWARAFSTKNRHGLMTTNISESINSTFSEARELPVICLL 60

Query: 61  EAIRRLIQQWFYDRRSFFSFQRAHPSPWVEDLLRTSLKEKRTMDVSFVSFYFF------- 120
           + IR L+Q+WFY+RRSF+S+Q+   +PW  + LR+SLKE RTMD+  V  Y +       
Sbjct: 61  QNIRDLMQRWFYERRSFYSYQQIDITPWTANALRSSLKESRTMDIYPVDQYLYDVHNDDR 120

Query: 121 ----------CN--------------------------------------------DVHP 173
                     CN                                            +VHP
Sbjct: 121 HFNVNILHCTCNFKQWDIDFIPCSHACLAISRRGLELHSFVHKFYHVKTLQLLYSWNVHP 180

BLAST of Lag0018373 vs. NCBI nr
Match: KAA0061274.1 (uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 6.1e-35
Identity = 88/201 (43.78%), Postives = 117/201 (58.21%), Query Frame = 0

Query: 1   MRQMEDIVPSIRSELEEVAHSKWARAFFVRNKYTIMTTNASESLNAILLEARELPVVPLL 60
           MRQ+E + PS+R ELE V   KWARAFF R +Y ++TTN SES+N+ L E RELPV+ LL
Sbjct: 432 MRQLEQLSPSMRHELEAVGRHKWARAFFKRKRYQVITTNISESMNSTLKEQRELPVIGLL 491

Query: 61  EAIRRLIQQWFYDRRSFFSFQRAHPSPWVEDLLRTSLKEKRTMDVSFV------------ 120
           E+   LIQ+WFY+RR+ +SFQR   S + ED++R SL + R+M++  V            
Sbjct: 492 ESRSSLIQKWFYERRTKWSFQRTQLSIYAEDMIRESLAQSRSMNIYPVDQHEFEVHHPLS 551

Query: 121 -----------SFYFFCNDVH-------PIGTVKQFPNSNVDEEDCILPPSTKRTAARPK 172
                       FY+  N ++       PIGTV Q  N++    D ILPP  KR A RPK
Sbjct: 552 TRNLNLHLYTDKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPK 611

BLAST of Lag0018373 vs. NCBI nr
Match: TYK26023.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 8.9e-34
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = 0

Query: 1   MRQMEDIVPSIRSELEEVAHSKWARAFFVRNKYTIMTTNASESLNAILLEARELPVVPLL 60
           +RQ+E + PS+R ELE V   KWARAFF R +Y ++TTN SES+N+ L E RELPV+ LL
Sbjct: 206 IRQLEQLFPSMRHELEAVGRHKWARAFFRRKRYQVITTNISESMNSTLKEQRELPVIGLL 265

Query: 61  EAIRRLIQQWFYDRRSFFSFQRAHPSPWVEDLLRTSLKEKRTMDVSFVSFYFFCNDVHPI 120
           E+IR LIQ+WFY+RR+ +SFQR   S + ED++R SL + R+M++  V       D H  
Sbjct: 266 ESIRSLIQKWFYERRTKWSFQRTQLSIYAEDMIRESLAQSRSMNIYPV-------DQHEF 325

Query: 121 GTVKQFPNSNVDEEDCILPPSTKRTAARPKKKRILSRFDRTTSFKCGRCGQ 172
               + P       D ILPP  KR A RPKKKR  S  ++  S +C RCG+
Sbjct: 326 EVHHRIPIQG--GNDGILPPQVKRPAGRPKKKRFTSFLEKKASVRCSRCGK 367

BLAST of Lag0018373 vs. NCBI nr
Match: KAA0067174.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 8.9e-34
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = 0

Query: 1   MRQMEDIVPSIRSELEEVAHSKWARAFFVRNKYTIMTTNASESLNAILLEARELPVVPLL 60
           +RQ+E + PS+R ELE V   KWARAFF R +Y ++TTN SES+N+ L E RELPV+ LL
Sbjct: 206 IRQLEQLFPSMRHELEAVGRHKWARAFFRRKRYQVITTNISESMNSTLKEQRELPVIGLL 265

Query: 61  EAIRRLIQQWFYDRRSFFSFQRAHPSPWVEDLLRTSLKEKRTMDVSFVSFYFFCNDVHPI 120
           E+IR LIQ+WFY+RR+ +SFQR   S + ED++R SL + R+M++  V       D H  
Sbjct: 266 ESIRSLIQKWFYERRTKWSFQRTQLSIYAEDMIRESLAQSRSMNIYPV-------DQHEF 325

Query: 121 GTVKQFPNSNVDEEDCILPPSTKRTAARPKKKRILSRFDRTTSFKCGRCGQ 172
               + P       D ILPP  KR A RPKKKR  S  ++  S +C RCG+
Sbjct: 326 EVHHRIPIQG--GNDGILPPQVKRPAGRPKKKRFTSFLEKKASVRCSRCGK 367

BLAST of Lag0018373 vs. NCBI nr
Match: KAA0033299.1 (uncharacterized protein E6C27_scaffold845G001100 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 6.4e-32
Identity = 85/201 (42.29%), Postives = 113/201 (56.22%), Query Frame = 0

Query: 1   MRQMEDIVPSIRSELEEVAHSKWARAFFVRNKYTIMTTNASESLNAILLEARELPVVPLL 60
           MRQ+E + PS+R ELE V   KW RAFF R +Y ++TTN SES+N+ L E RELPV+  L
Sbjct: 173 MRQLEQLSPSMRHELEAVGRHKWVRAFFRRKRYQVITTNISESMNSTLKEQRELPVIGFL 232

Query: 61  EAIRRLIQQWFYDRRSFFSFQRAHPSPWVEDLLRTSLKEKRTMDVSFV------------ 120
           E+IR LIQ+WFY+RR+ +SFQR   S + ED++R SL + R+M++  V            
Sbjct: 233 ESIRSLIQKWFYERRTKWSFQRTQLSIYAEDMIRESLAQSRSMNIYPVDQHEFEVHHPLS 292

Query: 121 -----------SFYFFCNDVH-------PIGTVKQFPNSNVDEEDCILPPSTKRTAARPK 172
                       FY+  N ++        IG V Q  N+     D ILPP  KR   RPK
Sbjct: 293 TRNLNLHLYTDKFYYVSNLINLYKKGTRSIGAVNQIRNTG--GNDGILPPQVKRPTGRPK 352

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157216.11.6e-3537.34uncharacterized protein LOC111023978 [Momordica charantia][more]
KAA0061274.16.1e-3543.78uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa][more]
TYK26023.18.9e-3447.95protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo var. makuwa][more]
KAA0067174.18.9e-3447.95protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo var. makuwa][more]
KAA0033299.16.4e-3242.29uncharacterized protein E6C27_scaffold845G001100 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018373.1Lag0018373.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding