Lag0018362 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018362
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr5: 24436905 .. 24437288 (-)
RNA-Seq ExpressionLag0018362
SyntenyLag0018362
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATATTGAAAAATACGGGCTGTTACATAAAGTCTTATTCGAATGGCCATATTGACGGTACTATAGAAGAAGACAACCAGAAATGGAGATTCACAGGTTTTTACGGGAATCCGGAAGCGAGTAAAAAACATGTGTCCTGGAAGCTGCTAGAAAGACTTAGCGAAGGTAACAATATCCCCTGGATTATAAGAGGAGATTTAAATGAATTACTCTTGGGTGATGAAAAAGCTGGGGGTTCTCAAAAAAACCAAAAGATGATCGATAGTTTTAGAGAAGCTATTGATAAATATAGGCTTAGAGATGTGGGGTTTATCTGCAACAAATTCACTTGGAGAAGGGGAAAGAAAGCTTCCACTGCCATTAGGGAGAGGCTCGACTGA

mRNA sequence

ATGATCATATTGAAAAATACGGGCTGTTACATAAAGTCTTATTCGAATGGCCATATTGACGGTACTATAGAAGAAGACAACCAGAAATGGAGATTCACAGGTTTTTACGGGAATCCGGAAGCGAGTAAAAAACATGTGTCCTGGAAGCTGCTAGAAAGACTTAGCGAAGGTAACAATATCCCCTGGATTATAAGAGGAGATTTAAATGAATTACTCTTGGGTGATGAAAAAGCTGGGGGTTCTCAAAAAAACCAAAAGATGATCGATAGTTTTAGAGAAGCTATTGATAAATATAGGCTTAGAGATGTGGGGTTTATCTGCAACAAATTCACTTGGAGAAGGGGAAAGAAAGCTTCCACTGCCATTAGGGAGAGGCTCGACTGA

Coding sequence (CDS)

ATGATCATATTGAAAAATACGGGCTGTTACATAAAGTCTTATTCGAATGGCCATATTGACGGTACTATAGAAGAAGACAACCAGAAATGGAGATTCACAGGTTTTTACGGGAATCCGGAAGCGAGTAAAAAACATGTGTCCTGGAAGCTGCTAGAAAGACTTAGCGAAGGTAACAATATCCCCTGGATTATAAGAGGAGATTTAAATGAATTACTCTTGGGTGATGAAAAAGCTGGGGGTTCTCAAAAAAACCAAAAGATGATCGATAGTTTTAGAGAAGCTATTGATAAATATAGGCTTAGAGATGTGGGGTTTATCTGCAACAAATTCACTTGGAGAAGGGGAAAGAAAGCTTCCACTGCCATTAGGGAGAGGCTCGACTGA

Protein sequence

MIILKNTGCYIKSYSNGHIDGTIEEDNQKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICNKFTWRRGKKASTAIRERLD
Homology
[Close]
BLAST of Lag0018362 vs. NCBI nr
Match: KAA3466354.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 127.9 bits (320), Expect = 6.3e-26
Identity = 59/119 (49.58%), Postives = 77/119 (64.71%), Query Frame = 0 

Query: 11  IKSYSNGHIDGTIEEDNQK--WRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDL 70
           +KSYS  HID  I E N K  WRFTGFYG+P    K+  W LL+ LS GN  PW++ GD 
Sbjct: 50  VKSYSKWHIDSLIREGNGKAEWRFTGFYGSPYLKDKNTVWDLLKGLSHGNYYPWLVAGDF 109

Query: 71  NELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICNKFTWRRGKKASTAIRERLD 128
           NE+L G+EK GG  ++Q  +D FR+ +++ +L D+G+    FTW RG    T IRERLD
Sbjct: 110 NEILFGNEKKGGGVRDQGRMDVFRDTLEECQLIDIGYSGTWFTWERGNLPETNIRERLD 168

[Close]
BLAST of Lag0018362 vs. NCBI nr
Match: KAA3461195.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 55/119 (46.22%), Postives = 84/119 (70.59%), Query Frame = 0 

Query: 11  IKSYSNGHIDGTIEED--NQKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDL 70
           +KS+S  HI+  IEE+  ++KW+FTGFY +P   +K ++W LL RLS+ +N PW++ GD 
Sbjct: 46  LKSFSKWHIEAFIEEEGVHKKWQFTGFYRSPYLKEKDLAWDLLRRLSQESNYPWLVTGDF 105

Query: 71  NELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICNKFTWRRGKKASTAIRERLD 128
           NE++ G EK GG+Q++ K +++FRE ++  +L+D+G+    FTW RG    T IRERLD
Sbjct: 106 NEIMYGFEKKGGAQRDHKKMEAFRETLEDCQLQDIGYSGTWFTWERGNLLETNIRERLD 164

[Close]
BLAST of Lag0018362 vs. NCBI nr
Match: KAA3485417.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-25
Identity = 53/119 (44.54%), Postives = 84/119 (70.59%), Query Frame = 0 

Query: 11  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDL 70
           ++SYS  HID  + E +  ++WRFTGFYG+P + +++  W LL+RLS+GN+ PW++ GD 
Sbjct: 80  LRSYSKWHIDALLWEGSIQKEWRFTGFYGSPYSKERNSVWSLLKRLSQGNSYPWLVAGDF 139

Query: 71  NELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICNKFTWRRGKKASTAIRERLD 128
           NE+L   EK+GG  + QK +++FR+ +++ +L D+G+   ++TW RG    T IRERLD
Sbjct: 140 NEILYSFEKSGGVSQEQKRMEAFRDTLEECKLSDIGYSGMRYTWERGNLPETNIRERLD 198

[Close]
BLAST of Lag0018362 vs. NCBI nr
Match: KAA3458060.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-25
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 0 

Query: 11  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDL 70
           +KSYS  HID  +EE+N   KWR TGFYG P    +   W+LL  L  G+N+PW++ GD 
Sbjct: 72  LKSYSRSHIDVEVEEENGVGKWRLTGFYGEPVEQNRRELWELLRSLQRGSNLPWLVVGDF 131

Query: 71  NELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICNKFTWRRGKKASTAIRERLD 128
           NE+L   EK GG  + ++ +++FR+A++   L D+GF    +TW RG+ AS  IRERLD
Sbjct: 132 NEILFSFEKQGGRMREERQMEAFRKALEDCELADLGFSGQWYTWERGRLASNNIRERLD 190

[Close]
BLAST of Lag0018362 vs. NCBI nr
Match: KAA3467408.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-25
Identity = 53/119 (44.54%), Postives = 78/119 (65.55%), Query Frame = 0 

Query: 11  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDL 70
           +KSYS  HI+  +EE++  + WRFTGFYG P    +  SW+LL  L  GNN+PW++ GD 
Sbjct: 36  LKSYSKSHINVVVEEEDGEEVWRFTGFYGEPVEQNRRASWELLRALQNGNNLPWLVAGDF 95

Query: 71  NELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICNKFTWRRGKKASTAIRERLD 128
           NE++   EK GG  + ++ +D+FR+ +D   L D+GF  + +TW RG+  S  IRERL+
Sbjct: 96  NEIMFSFEKQGGRIREERQMDAFRKTLDDCELADLGFSGHWYTWERGRLVSNNIRERLN 154

The following BLAST results are available for this feature:
BLAST of Lag0018362 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA3466354.16.3e-2649.58reverse transcriptase [Gossypium australe][more]
KAA3461195.11.1e-2546.22reverse transcriptase [Gossypium australe][more]
KAA3485417.12.4e-2544.54reverse transcriptase [Gossypium australe][more]
KAA3458060.15.4e-2546.22reverse transcriptase [Gossypium australe][more]
KAA3467408.15.4e-2544.54reverse transcriptase [Gossypium australe][more]
BLAST of Lag0018362 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 2..127
e-value: 1.5E-9
score: 40.0
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 7..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018362.1Lag0018362.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity