Lag0018343 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018343
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr5: 23748503 .. 23748895 (+)
RNA-Seq Expression	Lag0018343
Synteny	Lag0018343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGATCCCAAGAAAAATATGATTCCGTCGAAGATGAGAATGACGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCGCCTATTTCAAAACAGTAAAAGAAAGGTCAAATCTCAAAGGAAGAAGGGAAAAGAGAAGTCAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTCTGCCCTCCACAACCCGTAACTTTGGCAGAATACTTCCCAAGGCACTTTCTCGATGATAGTCAAGGAAAGCACTTGAAATCGTCACATGTCACATTGTGGACGTGGCGGAAGATGATGATTTTCCTACTAGTTCCTCGGGAGTGGTGGCAGGTTCATGAGACTTATCCTCCTTCAGCATAA

mRNA sequence

ATGAAGGGATCCCAAGAAAAATATGATTCCGTCGAAGATGAGAATGACGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCGCCTATTTCAAAACAGTAAAAGAAAGGTCAAATCTCAAAGGAAGAAGGGAAAAGAGAAGTCAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTCTGCCCTCCACAACCCGTAACTTTGGCAGAATACTTCCCAAGGCACTTTCTCGATGATAGTCAAGGAAAGCACTTGAAATCGTCACATGTCACATTGTGGACGTGGCGGAAGATGATGATTTTCCTACTAGTTCCTCGGGAGTGGTGGCAGGTTCATGAGACTTATCCTCCTTCAGCATAA

Coding sequence (CDS)

ATGAAGGGATCCCAAGAAAAATATGATTCCGTCGAAGATGAGAATGACGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCGCCTATTTCAAAACAGTAAAAGAAAGGTCAAATCTCAAAGGAAGAAGGGAAAAGAGAAGTCAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTCTGCCCTCCACAACCCGTAACTTTGGCAGAATACTTCCCAAGGCACTTTCTCGATGATAGTCAAGGAAAGCACTTGAAATCGTCACATGTCACATTGTGGACGTGGCGGAAGATGATGATTTTCCTACTAGTTCCTCGGGAGTGGTGGCAGGTTCATGAGACTTATCCTCCTTCAGCATAA

Protein sequence

MKGSQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTLWTWRKMMIFLLVPREWWQVHETYPPSA

Homology

[Close]

BLAST of Lag0018343 vs. NCBI nr
Match: KAA0042177.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-10
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPV 63
           SQEK  S+E++++GWT+V RRKK+K +   KESR ++N  R  K+Q+ K K+K+R+ K V
Sbjct: 375 SQEKERSIEEDDEGWTVVTRRKKRKSTPIPKESRFYRNYIRGNKAQKNKKKKKTRKLKLV 434

Query: 64  VEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL 104
            E  +DF    + VTLAE+FP  FL D Q ++ +  HV L
Sbjct: 435 HEVDKDFPRTQRLVTLAEFFPTRFLCDHQDENPELLHVML 474

[Close]

BLAST of Lag0018343 vs. NCBI nr
Match: TYK26751.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-10
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPV 63
           SQEK  S+E++++GWT+V RRKK+K +   KESR ++N  R  K+Q+ K K+K+R+ K V
Sbjct: 375 SQEKERSIEEDDEGWTVVTRRKKRKSTPIPKESRFYRNYIRGNKAQKNKKKKKTRKLKLV 434

Query: 64  VEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL 104
            E  +DF    + VTLAE+FP  FL D Q ++ +  HV L
Sbjct: 435 HEVDKDFPRTQRLVTLAEFFPTRFLCDHQDENPELLHVML 474

[Close]

BLAST of Lag0018343 vs. NCBI nr
Match: KAA0059012.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 0


Query: 4   SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPV 63
           SQEK  S+E++++GW +V RRKK+K +  +KESR ++N +R  K+Q+ K K+K+R+ K V
Sbjct: 116 SQEKERSIEEDDEGWIVVTRRKKRKSTSTQKESRFYRNYRRGNKAQKNKKKKKTRKPKLV 175

Query: 64  VEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH 96
            EE +D   P   VTLA++FP  FL D Q ++
Sbjct: 176 HEEDKDLPRPQPLVTLADFFPTKFLCDHQDEN 207

[Close]

BLAST of Lag0018343 vs. NCBI nr
Match: KAA0053192.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK00150.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 41/93 (44.09%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 4   SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPV 63
           SQ+K  S+E++++GW +V RRKK+K +  +KESR ++N +R  K+Q+ K K+K+R+ K +
Sbjct: 204 SQQKERSIEEDDEGWIVVTRRKKRKSTLIQKESRFYRNYRRGNKAQKNKKKKKTRKLKLM 263

Query: 64  VEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHL 97
            EE +DF    + VTLA++FP  FL D Q ++L
Sbjct: 264 HEEDKDFPQSQRLVTLADFFPTRFLCDHQNENL 296

[Close]

BLAST of Lag0018343 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 4   SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPV 63
           SQEK   +E++++GWT+V RRKK+K +  +KESRL+ N +R  K+Q+ K K+K+R+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  VEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH 96
            E+ +DF    + VTLA++FP  FL D Q ++
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDEN 558

The following BLAST results are available for this feature:

BLAST of Lag0018343 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042177.1	5.0e-10	46.00	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK26751.1	5.0e-10	46.00	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0059012.1	1.1e-09	45.65	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0053192.1	1.5e-09	44.09	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK00150.1 retrotranspos...	[more]
KAA0061113.1	1.5e-09	45.65	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]

BLAST of Lag0018343 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018343.1	Lag0018343.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process