Lag0018340 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018340
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr5: 23678383 .. 23679165 (+)
RNA-Seq Expression	Lag0018340
Synteny	Lag0018340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAGTTTCGGCAGACGCTATAAGATTGAGGTTATTCCCATTTTCTCTGCAAGACAAGGCAAAGGATTGGCTCGAATCAGTCGAGACGGGCAGTATTAGCACATGGGACGAGCTTGCCCAGGCTTTCCTGACAAAATTTTTCCCGCCTGCCAAGACCACGAAGCTCCAGACTGAGATCGGAACATTTAGGCAGCTTGATGAGGAGCAGTTGTACGAGGCATGGGAGAGATCTAAGGAAATGCTTAGGTGGTGCCCCCAGCATGGATATCCAGATTGGCTCCAGGTGCAGTTGTTTTATAATGGATTGAATTCCTCCACCAAGACCGTTTTAGACACATCAGCAGGTGATAGTTTTCTTTTCAAAACAGTGACGGAAGCCAAGGATCTGCTAGAGGAAATGGCAGCAACCAGTTATCAGTGGCCGACCGAGATGGGGACGATTTCCAAGAAGGCTGGAATTTATGAATTAGATGAGTCAAGTTCGTTGAAGGCACAGATGGCATCTTTGACAAATGCCCTAAACAAGCTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCGTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTACGTGGGAAACAGACCATTGAGTAATGTTCTGTTTCCCACATATTGAACTTCTTCCACATCTTGACCTTCCTTCTTTGAATATCCTTCAGCTAAGGTGGAAATGGACTTGACCATCTCAGATGAAGTCAACTTGTTCAGCGCATTGGTCAGAGATGCCATCTGA

mRNA sequence

ATGGATGGAGTTTCGGCAGACGCTATAAGATTGAGGTTATTCCCATTTTCTCTGCAAGACAAGGCAAAGGATTGGCTCGAATCAGTCGAGACGGGCAGTATTAGCACATGGGACGAGCTTGCCCAGGCTTTCCTGACAAAATTTTTCCCGCCTGCCAAGACCACGAAGCTCCAGACTGAGATCGGAACATTTAGGCAGCTTGATGAGGAGCAGTTGTACGAGGCATGGGAGAGATCTAAGGAAATGCTTAGGTGGTGCCCCCAGCATGGATATCCAGATTGGCTCCAGGTGCAGTTGTTTTATAATGGATTGAATTCCTCCACCAAGACCGTTTTAGACACATCAGCAGGTGATAGTTTTCTTTTCAAAACAGTGACGGAAGCCAAGGATCTGCTAGAGGAAATGGCAGCAACCAGTTATCAGTGGCCGACCGAGATGGGGACGATTTCCAAGAAGGCTGGAATTTATGAATTAGATGAGTCAAGTTCGTTGAAGGCACAGATGGCATCTTTGACAAATGCCCTAAACAAGCTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCGTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTACGTGGGAAACAGACCATTGACTAAGGTGGAAATGGACTTGACCATCTCAGATGAAGTCAACTTGTTCAGCGCATTGGTCAGAGATGCCATCTGA

Coding sequence (CDS)

ATGGATGGAGTTTCGGCAGACGCTATAAGATTGAGGTTATTCCCATTTTCTCTGCAAGACAAGGCAAAGGATTGGCTCGAATCAGTCGAGACGGGCAGTATTAGCACATGGGACGAGCTTGCCCAGGCTTTCCTGACAAAATTTTTCCCGCCTGCCAAGACCACGAAGCTCCAGACTGAGATCGGAACATTTAGGCAGCTTGATGAGGAGCAGTTGTACGAGGCATGGGAGAGATCTAAGGAAATGCTTAGGTGGTGCCCCCAGCATGGATATCCAGATTGGCTCCAGGTGCAGTTGTTTTATAATGGATTGAATTCCTCCACCAAGACCGTTTTAGACACATCAGCAGGTGATAGTTTTCTTTTCAAAACAGTGACGGAAGCCAAGGATCTGCTAGAGGAAATGGCAGCAACCAGTTATCAGTGGCCGACCGAGATGGGGACGATTTCCAAGAAGGCTGGAATTTATGAATTAGATGAGTCAAGTTCGTTGAAGGCACAGATGGCATCTTTGACAAATGCCCTAAACAAGCTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCGTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTACGTGGGAAACAGACCATTGACTAAGGTGGAAATGGACTTGACCATCTCAGATGAAGTCAACTTGTTCAGCGCATTGGTCAGAGATGCCATCTGA

Protein sequence

MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQDVEEVQYVGNRPLTKVEMDLTISDEVNLFSALVRDAI

Homology

[Close]

BLAST of Lag0018340 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 256.1 bits (653), Expect = 2.9e-64
Identity = 124/182 (68.13%), Postives = 152/182 (83.52%), Query Frame = 0


Query: 1   MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTE 60
           M+GVS DAI+LRLFPFSLQD+AKDWLE++   SI+TW+ LAQAFL K+FPPAK+ +L+TE
Sbjct: 121 MNGVSNDAIKLRLFPFSLQDRAKDWLETIPPDSITTWEILAQAFLNKYFPPAKSQRLRTE 180

Query: 61  IGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSF 120
           IGTFRQL++EQLYEAWER K++LR CPQHGYPDWLQ+QLFYNGL SSTK++LD +AG S 
Sbjct: 181 IGTFRQLEDEQLYEAWERYKDLLRRCPQHGYPDWLQIQLFYNGLASSTKSILDATAGGSI 240

Query: 121 LFKTVTEAKDLLEEMAATSYQWPTEMGT--ISKKAGIYELDESSSLKAQMASLTNALNKL 180
             K   EA  +LE++A TSY WP E  +  I K AG+YE+DE +SLKAQMASLTNAL+KL
Sbjct: 241 FSKNAQEAYTILEDLATTSYNWPCERASPNIPKAAGLYEVDEVNSLKAQMASLTNALSKL 300

[Close]

BLAST of Lag0018340 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-57
Identity = 112/213 (52.58%), Postives = 156/213 (73.24%), Query Frame = 0


Query: 1   MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTE 60
           M+GV+ D IRLRLFPFSL+DKA+ WL+S++ GSI++W ++A+ FL KFFPPAKT +L++E
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSITSWQDMAEKFLAKFFPPAKTAQLRSE 136

Query: 61  IGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSF 120
           IG FRQ D E LYEAWER K+++R CPQHG PDWLQVQ+FYNGLN  T+T++D ++G + 
Sbjct: 137 IGQFRQNDFESLYEAWERYKDLIRCCPQHGLPDWLQVQMFYNGLNGQTRTIVDAASGGTL 196

Query: 121 LFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTS 180
           + KT   A  LLEEMA+ +YQWPTE     K AGI+EL+  ++L AQ+ASL++ ++ L++
Sbjct: 197 MSKTAEGATSLLEEMASNNYQWPTERTMAKKVAGIHELEPFAALSAQVASLSHQVSALST 256

Query: 181 SEVVKSISTVAEGYSKKEGQDV--EEVQYVGNR 212
             + +S   VA         +   E+VQY+ NR
Sbjct: 257 QRIPQSAEYVAASSMTVPMNEASQEQVQYINNR 289

[Close]

BLAST of Lag0018340 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-57
Identity = 112/213 (52.58%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 1   MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTE 60
           M+GV+ D IRLRLFPFSL+DKA+ WL+S++ GSI++W ++A+ FL KFFPPAKT +L++E
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSITSWQDMAEKFLAKFFPPAKTAQLRSE 136

Query: 61  IGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSF 120
           IG FRQ D E LYEAWER K+++R CPQHG PDWLQVQ+FYNGLN  T+T++D ++G + 
Sbjct: 137 IGQFRQNDFESLYEAWERYKDLIRCCPQHGLPDWLQVQMFYNGLNGQTRTIVDAASGGTL 196

Query: 121 LFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTS 180
           + KT   A  LLEEMA+ +YQWPTE     K AGI+EL+  ++L AQ+ASL++ ++ LT+
Sbjct: 197 MSKTAEGATSLLEEMASNNYQWPTERTMAKKVAGIHELEPFAALSAQVASLSHQVSALTT 256

Query: 181 SEVVKSISTVAEGYSKKEGQDV--EEVQYVGNR 212
             + +    VA         +   E+VQY+ NR
Sbjct: 257 QRIPQGAEYVAASSMTVPMNEASQEQVQYINNR 289

[Close]

BLAST of Lag0018340 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-56
Identity = 112/213 (52.58%), Postives = 154/213 (72.30%), Query Frame = 0


Query: 1   MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTE 60
           M+GV+ D IRLRLFPFSL+DKA+ WL+S++ GSI++W ++A+ FL KFFPPAKT +L++E
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSITSWQDMAEKFLAKFFPPAKTAQLRSE 136

Query: 61  IGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSF 120
           IG FRQ D E LYEAWER K+++R CPQHG  DWLQVQ+FYNGLN  T+T++D ++G + 
Sbjct: 137 IGQFRQNDFESLYEAWERYKDLIRCCPQHGLLDWLQVQMFYNGLNGQTRTIVDAASGGTL 196

Query: 121 LFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTS 180
           + KT   A  LLEEMA+  YQWPTE     K AGI+EL+  ++L AQ+ASL++ ++ LT+
Sbjct: 197 MSKTAEGATSLLEEMASNKYQWPTERTMAKKVAGIHELESFAALAAQVASLSHQVSALTT 256

Query: 181 SEVVKSISTVAEGYSKKEGQDV--EEVQYVGNR 212
             + +S+  VA         +   E VQY+ NR
Sbjct: 257 QRIPQSVEYVAASSMTVPMNEASQEHVQYINNR 289

[Close]

BLAST of Lag0018340 vs. NCBI nr
Match: KAG7947748.1 (hypothetical protein I3843_14G109500 [Carya illinoinensis])

HSP 1 Score: 228.4 bits (581), Expect = 6.4e-56
Identity = 111/213 (52.11%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 1   MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTE 60
           ++GV+ D IRLRLFPFSL+DKA+ WL+S++ GSI +W ++A+ FL KFFPPAKT +L++E
Sbjct: 77  INGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSIVSWQDMAERFLAKFFPPAKTAQLRSE 136

Query: 61  IGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSF 120
           IG F+Q D E LYEAWER K+++R CPQHG PDWLQVQ+FYNGLN  T+T++D ++G + 
Sbjct: 137 IGQFKQNDFESLYEAWERYKDLIRRCPQHGLPDWLQVQMFYNGLNGQTRTIVDAASGGTL 196

Query: 121 LFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTS 180
           + KT   A  LLEEMA+ +YQWPTE     K AGI+EL+  ++L AQ+A+L++ ++ LT+
Sbjct: 197 MSKTAEGATALLEEMASNNYQWPTERTLAKKVAGIHELEPIAALSAQVATLSHQISALTT 256

Query: 181 SEVVKSISTVAEGYSKKEGQDV--EEVQYVGNR 212
             + +S   VA         +   E+VQYV NR
Sbjct: 257 QRIPQSTEYVASTSMIVPSNEASQEQVQYVNNR 289

[Close]

BLAST of Lag0018340 vs. ExPASy TrEMBL
Match: A0A6J0ZYV0 (uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC110413413 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 5.5e-53
Identity = 113/214 (52.80%), Postives = 143/214 (66.82%), Query Frame = 0


Query: 2   DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEI 61
           +GV+ DAIRLRLFPFSL+DKAK WL S+  GSI+TW++LAQ FL KFFPPAKT K++ +I
Sbjct: 125 NGVTDDAIRLRLFPFSLRDKAKSWLNSLPNGSITTWEDLAQKFLAKFFPPAKTAKMRNDI 184

Query: 62  GTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSFL 121
            +F Q D E LYEAWER KE+LR CP HG PDWLQVQ FYNGL  S KT++D +AG + +
Sbjct: 185 TSFIQFDGESLYEAWERFKELLRRCPHHGIPDWLQVQTFYNGLVGSIKTIIDAAAGGALM 244

Query: 122 FKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSS 181
            K   +A +LLEEMA+ +YQWP+E     K  G YE+D   +L  Q+A+L+  L+ L   
Sbjct: 245 SKNAVDAYNLLEEMASNNYQWPSERSGSRKAVGAYEIDALGTLTTQVAALSKKLDTLGVH 304

Query: 182 EVVKSISTVAEGYSKKEGQD-----VEEVQYVGN 211
            V  S+  V E        D      E VQ+VGN
Sbjct: 305 AVQNSL-VVCEMCGDSHSYDQCPYNSESVQFVGN 337

[Close]

BLAST of Lag0018340 vs. ExPASy TrEMBL
Match: A0A6J0ZX64 (LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica OX=108875 GN=LOC110412945 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 5.5e-53
Identity = 113/214 (52.80%), Postives = 143/214 (66.82%), Query Frame = 0


Query: 2   DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEI 61
           +GV+ DAIRLRLFPFSL+DKAK WL S+  GSI+TW++LAQ FL KFFPPAKT K++ +I
Sbjct: 125 NGVTDDAIRLRLFPFSLRDKAKSWLNSLPNGSITTWEDLAQKFLAKFFPPAKTAKMRNDI 184

Query: 62  GTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSFL 121
            +F Q D E LYEAWER KE+LR CP HG PDWLQVQ FYNGL  S KT++D +AG + +
Sbjct: 185 TSFIQFDGESLYEAWERFKELLRRCPHHGIPDWLQVQTFYNGLVGSIKTIIDAAAGGALM 244

Query: 122 FKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSS 181
            K   +A +LLEEMA+ +YQWP+E     K  G YE+D   +L  Q+A+L+  L+ L   
Sbjct: 245 SKNAVDAYNLLEEMASNNYQWPSERSGSRKAVGAYEIDALGTLTTQVAALSKKLDTLGVH 304

Query: 182 EVVKSISTVAEGYSKKEGQD-----VEEVQYVGN 211
            V  S+  V E        D      E VQ+VGN
Sbjct: 305 AVQNSL-VVCEMCGDSHSYDQCPYNSESVQFVGN 337

[Close]

BLAST of Lag0018340 vs. ExPASy TrEMBL
Match: A0A2I4G4Q3 (uncharacterized protein LOC109004712 OS=Juglans regia OX=51240 GN=LOC109004712 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-52
Identity = 105/213 (49.30%), Postives = 153/213 (71.83%), Query Frame = 0


Query: 1   MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTE 60
           ++GV+ D IRLRLFPFSL+D+A+ WL+S++  SI++W ++A+ F  KFFPPAKTT+L++E
Sbjct: 31  INGVTEDTIRLRLFPFSLRDRARGWLQSLQPRSITSWQDMAEKFHAKFFPPAKTTQLRSE 90

Query: 61  IGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSF 120
           IG F+Q D E LYEAWE  K+++R CPQHG PDWLQVQ+FYNGLN  T+T++D ++G + 
Sbjct: 91  IGQFKQNDFESLYEAWEIYKDLIRRCPQHGLPDWLQVQMFYNGLNGHTRTIVDDTSGGTL 150

Query: 121 LFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTS 180
           + KT+  A  LLEEMA+ +YQWP E     K A I+EL+  ++L AQ+A+L++ ++ LT+
Sbjct: 151 MLKTIEGATYLLEEMASNNYQWPIERTMAKKVARIHELEPLAALSAQVATLSHQISALTT 210

Query: 181 SEVVKSISTVAEGYSKKEGQDV--EEVQYVGNR 212
             + +S   V          +V  E+VQY+ NR
Sbjct: 211 QRIPQSAEYVVATSMTVLSNEVSQEQVQYINNR 243

[Close]

BLAST of Lag0018340 vs. ExPASy TrEMBL
Match: A0A803PT47 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 103/209 (49.28%), Postives = 149/209 (71.29%), Query Frame = 0


Query: 1   MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTE 60
           M+GV+ DAIRLRLFP SL+D+ + WL+S++  SISTWDE+A+ F+ KFFPP+K+ +L++E
Sbjct: 69  MNGVTDDAIRLRLFPSSLRDRVRKWLQSMQPCSISTWDEMARKFMVKFFPPSKSAQLRSE 128

Query: 61  IGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSF 120
           IG FR LD E  YEAWERSK++LR  PQHGY  W+QV +FYNGLN  T+T++D + G + 
Sbjct: 129 IGQFRHLDSEPFYEAWERSKDLLRHYPQHGYESWMQVSIFYNGLNGPTRTLIDAAVGGAL 188

Query: 121 LFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTS 180
           L K +TEA +LLEEMA  SY WP E  T  K AG++E+D  +++ AQ+++L+N    L +
Sbjct: 189 LSKHITEAINLLEEMATNSYNWPNERNTHKKLAGLHEVDPMTNIAAQISALSNQEAALVN 248

Query: 181 SEVVKSI-STVAEGYSKKEGQDVEEVQYV 209
            +   ++ + VA   S+     +E+ QY+
Sbjct: 249 HKNTSTVENVVAASTSQGPEMSIEQAQYM 277

[Close]

BLAST of Lag0018340 vs. ExPASy TrEMBL
Match: A0A6P6XAQ1 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.4e-48
Identity = 106/214 (49.53%), Postives = 138/214 (64.49%), Query Frame = 0


Query: 2   DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEI 61
           +GVS DAI+LRLFPFSL+DKAK WL+S    + +TWDELA+AFL KFFPP KT KL+ +I
Sbjct: 76  NGVSEDAIKLRLFPFSLRDKAKVWLQSHPPNTFTTWDELAKAFLNKFFPPGKTAKLRMDI 135

Query: 62  GTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKTVLDTSAGDSFL 121
            +F Q + E LYEAWER +E+ R CP HG PDWL VQ FYNGL   TKT +D +AG + +
Sbjct: 136 TSFSQQEGETLYEAWERYRELQRRCPHHGLPDWLVVQTFYNGLTYPTKTHVDAAAGGALM 195

Query: 122 FKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSS 181
            KT  EA+ L+EEMAA +YQW  E G   + AG+ E+D  + L A+M ++   LN+   S
Sbjct: 196 GKTAEEAQQLIEEMAANNYQWANERGNSRRTAGMLEVDTLNMLSAKMDNVVKMLNRQVGS 255

Query: 182 E-----VVKSISTVAEGYSKKEGQDVEEVQYVGN 211
                 VV S +     +        E+VQY+ N
Sbjct: 256 SSNQGVVVASCTICGGDHDDFMCSSSEQVQYLNN 289

The following BLAST results are available for this feature:

BLAST of Lag0018340 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833153.1	2.9e-64	68.13	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
XP_023903214.1	4.5e-57	52.58	uncharacterized protein LOC112015077 [Quercus suber]	[more]
XP_023874613.1	4.5e-57	52.58	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_023929660.1	1.7e-56	52.58	uncharacterized protein LOC112040975 [Quercus suber]	[more]
KAG7947748.1	6.4e-56	52.11	hypothetical protein I3843_14G109500 [Carya illinoinensis]	[more]

BLAST of Lag0018340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0018340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J0ZYV0	5.5e-53	52.80	uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A6J0ZX64	5.5e-53	52.80	LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica ...	[more]
A0A2I4G4Q3	1.6e-52	49.30	uncharacterized protein LOC109004712 OS=Juglans regia OX=51240 GN=LOC109004712 P...	[more]
A0A803PT47	4.7e-52	49.28	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6P6XAQ1	2.4e-48	49.53	Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1	[more]

BLAST of Lag0018340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 13..105 e-value: 1.0E-17 score: 64.2
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 5..180
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018340.1	Lag0018340.1	mRNA