Lag0018183 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTACACGAACGCGTTGGATCGCAGCGTTTGTATCAAATACAAAGTGGGCCGTATCCATAGTGTCACCAGGATAAGGCACCCAGTCTTATCCCTTACTATAGACCCTTTAGGCTGTTTCTTGAACAATGATCCCATATGTCGCTACATATAGTTCAAGACTCATATTACAGCCTTGGATGTCTAGTTTATTGGATTAGGGTTATTATTAGGCAAAGACATATATAAAATAACTAATAACAATTAATGGAAAATATATCAATATTATTTCATTAATATCCGGTCAACGGTTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAGAGGATCCTACATCCATGAAGGACTTTCGTCCATTAGTTGTGCAATGTAATTTATAAGATCATAGCTAAGACGCTTGCCAATAGAATGAAACAGGTGCTCGACAAGATTATCTCGCCAAGCCAATCGGCTTTTGTGTCTGGCGCCTTATCACGGACAATGCCATCTTGGGTTTGAATGTATTCATGCAGTGAATAGCAGAAAAAAGGGAAAGGATGGAGTTGTGGCGCTTAAGCTTGATATGAGCAAGGCGTATGATCGAGTAGAGTGGATTTTCATTCGAAAGATAATGGCAAAATGGGGTTCAACAACCAATGGATTGAGATAACATGGCTGTGTTGAATCGGTTGAGTTCCAGGTTCTCCTCAATGGTACTCCGAGGAGTGGATTCACCCAAATCGGGACTTAGACAGGGAGACCCACTTTCCCATACTTATTCTCATTTGTGCTGAAGGTTGTCTGGACTATTGAACCAAGCTGATAATAACAGGGAGTAGACAGATTTGAGGATAAATAAATATTGTCCTTCTATAACCCATCTCTTTACGCTGATGATAGTTTGTTGTTCTTTAAAGCGTCTAATGCAGATTGCAGGACTATTCGGGACATCCTTGATATATATGCGAAAGCTTCTGGCCAAACTATTAATTTGGACAAATCTAACTTTATGGTGAGCCCTAACACAAAAGAAGAAAGCGTGACGATCATCAAGGAGCCTACAAGTCCAATTCACCAAAGCTTAGGCCAATATTTAGGCATTCCCTCGCAGAATGCTAGAAACAAGAAGGAGATCTTCAATGGCATAAAAGATCGAGTTTGGAAGGCTCTCCAAGGATGGAAAGGAAGTTTTTTTCAATTGCTGGCAAAGAAATACTTATTAAATCTATTGCCCAGGCTATTCCTAATTATGCAATGAGCTGCTTTAAGTTTCCTCTAACTCTATGTAATGAATTAAATGCCTTATGTGCTAGGTTCTGGTGGGGACAACAGATTCGGAGAAGAAAATTCATTGGTGTAGCTGGGACAAACTTTGCCACAACAAGAATTCGGAGGAATGGGCTTTCGAGAGCTATCCTTGTTCAACCAAGCCATGTTGGCAAAACAAAGCTGGAGGTTAATCAAATTTCCAAACAGCTTGCTCGCAAAGGTGCTTCGTGGATGTATTTCAAAACGGGACATTTCTTGAAACCTCTTTGGGTGCAAATCCTTCTTTTACATGGAGGAGCATCCTATGGGTCGAGACCTCTTTAAGATAGGATATAGATGGAGGATTGGAAATGGCTTAAGCGTGGATGTTTGGATGATCCTTGGATTCTGAAAGAAGGTTCCGCTAAGCCAATTCTAGTTCGTCCTGATATACGTCACCTCACTGTGGCGCATCTCAAAGACTCGAACGGGTTGTGGAAGGAGAATATTATTAGAGAGTGCTTCCTGGACACATATGCAGAGGCAATTTTAAATATGCCATCTTGTTCTACCATGGCGAGGACGAGATCATTTGGAATTACGATGCTAAAGGGAAGTTTCGGTAAAAGTGCGTACGTTAGGCTTCAATGTCAAACAGAGTGGTCAGGCTTCGTCCTCTAGCTATAAAGCTCAAGAGCGAATGTGGAAGATTGTTGGAAAATCAATCTACCTCAGAAAATTAAAATCTGTGGTTGGAGGATTTATAATGATATTCTTCCAAATTTAACTAATCTGATTAAGCGTGGATAGATGTTAATCCTTTGTGTTATCTCTGCAGGAGAAGCCTGAATGGTTGCAACATCTCTTTGGAATGCAAGTTCATGAAAGAGGTGTGCATAAGTATTTCCCTATCTCTCATTATTTGCTTCGGATGGCAGGAATAACGGATGGTGGTTGATTTTGCGAATGGACCTGGAAGCGACAGAGGGATGCACCATGGATACAAAAAGCCTAAGGATTAGTCTCATTATCCTTTGGAAGATTTGGCATTTAGGAACTCCATCAGCCACAACAAACAAATTCCCAAGCAGAGAGTTTACAACAGCAAATTGACAAAGCAATATCTGAGCTAATCGGAGAACAAGAGGAGTACCTACCTAATGCGACTGTGAACGAGCAACCCTTCAGTTTCAACAACAAGTCGGCACCCATGTCTGGATGGCTTGCGATTCCCGAAGGCCTATTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAA ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTACACGAACGCGTTGGATCGCAGCGTTTGTATCAAATACAAAGTGGGCCGTGCTCGACAAGATTATCTCGCCAAGCCAATCGGCTTTTGTGTCTGGCGCCTTATCACGGACAATGCCATCTTGGGTTCTCCTCAATGGTACTCCGAGGAGTGGATTCACCCAAATCGGGACTTAGACAGGGAGACCCACTTTCCCATACTTATTCTCATTTGTGCTGAAGCGTCTAATGCAGATTGCAGGACTATTCGGGACATCCTTGATATATATGCGAAAGCTTCTGGCCAAACTATTAATTTGGACAAATCTAACTTTATGGTGAGCCCTAACACAAAAGAAGAAAGCGTGACGATCATCAAGGAGCCTACAAGTCCAATTCACCAAAGCTTAGGCCAATATTTAGGCATTCCCTCGCAGAATGCTAGAAACAAGAAGGAGATCTTCAATGGCATAAAAGATCGAGCTATTCCTAATTATGCAATGAGCTGCTTTAAGTTTCCTCTAACTCTATGTAATGAATTAAATGCCTTATGTGCTAGGTTCTGGTGGGGACAACAGATTCGGAGAAGAAAATTCATTGGTGTAGCTGGGACAAACTTTGCCACAACAAGAATTCGGAGGAATGGGCTTTCGAGAGCTATCCTTGTTCAACCAAGCCATGTTGGCAAAACAAAGCTGGAGGTTAATCAAATTTCCAAACAGCTTGCTCGCAAAGGTTCCGCTAAGCCAATTCTAGTTCGTCCTGATATACGTCACCTCACTGTGGCGCATCTCAAAGACTCGAACGGGTTGTGGAAGGAGAATATTATTAGAGAGTGCTTCCTGGACACATATGCAGAGGCAATTTTAAATATGCCATCTTGTTCTACCATGGCGAGGACGAGATCATTTGGAATTACGATGCTAAAGGGAAGTTTCGGTAAAAGTGCGAGAAGCCTGAATGGTTGCAACATCTCTTTGGAATGCAAGTTCATGAAAGAGGAACTCCATCAGCCACAACAAACAAATTCCCAAGCAGAGAGTTTACAACAGCAAATTGACAAAGCAATATCTGAGCTAATCGGAGAACAAGAGGAGTACCTACCTAATGCGACTGTGAACGAGCAACCCTTCAGTTTCAACAACAAGTCGGCACCCATGTCTGGATGGCTTGCGATTCCCGAAGGCCTATTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAA ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTACACGAACGCGTTGGATCGCAGCGTTTGTATCAAATACAAAGTGGGCCGTGCTCGACAAGATTATCTCGCCAAGCCAATCGGCTTTTGTGTCTGGCGCCTTATCACGGACAATGCCATCTTGGGTTCTCCTCAATGGTACTCCGAGGAGTGGATTCACCCAAATCGGGACTTAGACAGGGAGACCCACTTTCCCATACTTATTCTCATTTGTGCTGAAGCGTCTAATGCAGATTGCAGGACTATTCGGGACATCCTTGATATATATGCGAAAGCTTCTGGCCAAACTATTAATTTGGACAAATCTAACTTTATGGTGAGCCCTAACACAAAAGAAGAAAGCGTGACGATCATCAAGGAGCCTACAAGTCCAATTCACCAAAGCTTAGGCCAATATTTAGGCATTCCCTCGCAGAATGCTAGAAACAAGAAGGAGATCTTCAATGGCATAAAAGATCGAGCTATTCCTAATTATGCAATGAGCTGCTTTAAGTTTCCTCTAACTCTATGTAATGAATTAAATGCCTTATGTGCTAGGTTCTGGTGGGGACAACAGATTCGGAGAAGAAAATTCATTGGTGTAGCTGGGACAAACTTTGCCACAACAAGAATTCGGAGGAATGGGCTTTCGAGAGCTATCCTTGTTCAACCAAGCCATGTTGGCAAAACAAAGCTGGAGGTTAATCAAATTTCCAAACAGCTTGCTCGCAAAGGTTCCGCTAAGCCAATTCTAGTTCGTCCTGATATACGTCACCTCACTGTGGCGCATCTCAAAGACTCGAACGGGTTGTGGAAGGAGAATATTATTAGAGAGTGCTTCCTGGACACATATGCAGAGGCAATTTTAAATATGCCATCTTGTTCTACCATGGCGAGGACGAGATCATTTGGAATTACGATGCTAAAGGGAAGTTTCGGTAAAAGTGCGAGAAGCCTGAATGGTTGCAACATCTCTTTGGAATGCAAGTTCATGAAAGAGGAACTCCATCAGCCACAACAAACAAATTCCCAAGCAGAGAGTTTACAACAGCAAATTGACAAAGCAATATCTGAGCTAATCGGAGAACAAGAGGAGTACCTACCTAATGCGACTGTGAACGAGCAACCCTTCAGTTTCAACAACAAGTCGGCACCCATGTCTGGATGGCTTGCGATTCCCGAAGGCCTATTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAA MQTHCIGYPHSHVSYTNALDRSVCIKYKVGRARQDYLAKPIGFCVWRLITDNAILGSPQWYSEEWIHPNRDLDRETHFPILILICAEASNADCRTIRDILDIYAKASGQTINLDKSNFMVSPNTKEESVTIIKEPTSPIHQSLGQYLGIPSQNARNKKEIFNGIKDRAIPNYAMSCFKFPLTLCNELNALCARFWWGQQIRRRKFIGVAGTNFATTRIRRNGLSRAILVQPSHVGKTKLEVNQISKQLARKGSAKPILVRPDIRHLTVAHLKDSNGLWKENIIRECFLDTYAEAILNMPSCSTMARTRSFGITMLKGSFGKSARSLNGCNISLECKFMKEELHQPQQTNSQAESLQQQIDKAISELIGEQEEYLPNATVNEQPFSFNNKSAPMSGWLAIPEGLLMWTFPTASARVK Homology
BLAST of Lag0018183 vs. NCBI nr
Match: XP_030479476.1 (uncharacterized protein LOC115696730 [Cannabis sativa]) HSP 1 Score: 103.6 bits (257), Expect = 4.2e-18 Identity = 59/164 (35.98%), Postives = 85/164 (51.83%), Query Frame = 0
BLAST of Lag0018183 vs. NCBI nr
Match: XP_030477990.1 (uncharacterized protein LOC115695032 [Cannabis sativa]) HSP 1 Score: 101.7 bits (252), Expect = 1.6e-17 Identity = 57/153 (37.25%), Postives = 79/153 (51.63%), Query Frame = 0
BLAST of Lag0018183 vs. NCBI nr
Match: XP_034219069.1 (uncharacterized protein LOC117630466 [Prunus dulcis]) HSP 1 Score: 100.1 bits (248), Expect = 4.6e-17 Identity = 75/224 (33.48%), Postives = 102/224 (45.54%), Query Frame = 0
BLAST of Lag0018183 vs. NCBI nr
Match: XP_023902041.1 (uncharacterized protein LOC112013897 [Quercus suber]) HSP 1 Score: 100.1 bits (248), Expect = 4.6e-17 Identity = 82/276 (29.71%), Postives = 120/276 (43.48%), Query Frame = 0
BLAST of Lag0018183 vs. NCBI nr
Match: OMO99000.1 (reverse transcriptase [Corchorus capsularis]) HSP 1 Score: 99.4 bits (246), Expect = 7.9e-17 Identity = 82/272 (30.15%), Postives = 119/272 (43.75%), Query Frame = 0
BLAST of Lag0018183 vs. ExPASy TrEMBL
Match: A0A2N9J6K4 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59981 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 9.1e-19 Identity = 77/224 (34.38%), Postives = 103/224 (45.98%), Query Frame = 0
BLAST of Lag0018183 vs. ExPASy TrEMBL
Match: A0A2N9J5D9 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59443 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 9.1e-19 Identity = 78/225 (34.67%), Postives = 102/225 (45.33%), Query Frame = 0
BLAST of Lag0018183 vs. ExPASy TrEMBL
Match: A0A2N9I6M1 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47940 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 2.7e-18 Identity = 70/197 (35.53%), Postives = 97/197 (49.24%), Query Frame = 0
BLAST of Lag0018183 vs. ExPASy TrEMBL
Match: A0A2N9GJ35 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27322 PE=3 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 3.5e-18 Identity = 61/151 (40.40%), Postives = 79/151 (52.32%), Query Frame = 0
BLAST of Lag0018183 vs. ExPASy TrEMBL
Match: A0A2N9EMD0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7908 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 5.9e-18 Identity = 70/203 (34.48%), Postives = 93/203 (45.81%), Query Frame = 0
BLAST of Lag0018183 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 43.9 bits (102), Expect = 3.7e-04 Identity = 20/56 (35.71%), Postives = 27/56 (48.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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