Lag0018168 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018168
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGlycine-rich cell wall structural protein-like
Locationchr5: 17878812 .. 17879273 (+)
RNA-Seq ExpressionLag0018168
SyntenyLag0018168
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCCAAGATTCTCTTTCTTCTGCTTCTTGGTGCCTTTGTCTGCACCACTTCTGGGGCTCGCAAGCTGACTCCCTCTTTTGAAGAGGAGAAGTTCTTCCACCGTCCTAGATTTGGCGGCGGAGGATTCGGTGGTGGAGGCGGTGGAGGGTTCGGCGGAGGTGGAGGGCTAGGTGGGGGTTCTGGAGGTGGTTTTGGTGGTGGTTCGGGAGGTGGTTTTGGTGGTGGTGGCGGCGCTGGAGGAGGAGGAGGGTTTGGTGGAGGAGGAGGTGGTGGACTAGGTGGAGGGAGTGGTTTTGGAGGCGGAGCTGGATTCGGAGGAGGGGCCGGTGCAGGAGGAGGAATTGGTGGTGGAGCTGGTGGTGGAGGAGGTGGAGGGTTCGGTGGCGGTGGGGGACTTGGGGGTGGAGCAGGCGGAGGGTTCGGCGGAGGCGCCGGTGGCGGAGGTGGTCTTCCTTGA

mRNA sequence

ATGACTTCCAAGATTCTCTTTCTTCTGCTTCTTGGTGCCTTTGTCTGCACCACTTCTGGGGCTCGCAAGCTGACTCCCTCTTTTGAAGAGGAGAAGTTCTTCCACCGTCCTAGATTTGGCGGCGGAGGATTCGGTGGTGGAGGCGGTGGAGGGTTCGGCGGAGGTGGAGGGCTAGGTGGGGGTTCTGGAGGTGGTTTTGGTGGTGGTTCGGGAGGTGGTTTTGGTGGTGGTGGCGGCGCTGGAGGAGGAGGAGGGTTTGGTGGAGGAGGAGGTGGTGGACTAGGTGGAGGGAGTGGTTTTGGAGGCGGAGCTGGATTCGGAGGAGGGGCCGGTGCAGGAGGAGGAATTGGTGGTGGAGCTGGTGGTGGAGGAGGTGGAGGGTTCGGTGGCGGTGGGGGACTTGGGGGTGGAGCAGGCGGAGGGTTCGGCGGAGGCGCCGGTGGCGGAGGTGGTCTTCCTTGA

Coding sequence (CDS)

ATGACTTCCAAGATTCTCTTTCTTCTGCTTCTTGGTGCCTTTGTCTGCACCACTTCTGGGGCTCGCAAGCTGACTCCCTCTTTTGAAGAGGAGAAGTTCTTCCACCGTCCTAGATTTGGCGGCGGAGGATTCGGTGGTGGAGGCGGTGGAGGGTTCGGCGGAGGTGGAGGGCTAGGTGGGGGTTCTGGAGGTGGTTTTGGTGGTGGTTCGGGAGGTGGTTTTGGTGGTGGTGGCGGCGCTGGAGGAGGAGGAGGGTTTGGTGGAGGAGGAGGTGGTGGACTAGGTGGAGGGAGTGGTTTTGGAGGCGGAGCTGGATTCGGAGGAGGGGCCGGTGCAGGAGGAGGAATTGGTGGTGGAGCTGGTGGTGGAGGAGGTGGAGGGTTCGGTGGCGGTGGGGGACTTGGGGGTGGAGCAGGCGGAGGGTTCGGCGGAGGCGCCGGTGGCGGAGGTGGTCTTCCTTGA

Protein sequence

MTSKILFLLLLGAFVCTTSGARKLTPSFEEEKFFHRPRFGGGGFGGGGGGGFGGGGGLGGGSGGGFGGGSGGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGGIGGGAGGGGGGGFGGGGGLGGGAGGGFGGGAGGGGGLP
Homology
BLAST of Lag0018168 vs. NCBI nr
Match: KAA0065824.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96563.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-17
Identity = 131/156 (83.97%), Postives = 140/156 (89.74%), Query Frame = 0

Query: 1   MTSKILFLLLLGAFVCTTSGARKL-TPSFEEEKFFHRPRFGGGGFGGGGGGGF--GGGGG 60
           M SKI+FL+ LGAF+ +TSGARKL T SF++EKFFHRPRFGGGG GGGGGGGF  GGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGGIG 120
           LGGGSGGGFGGGSG G G GGGAGGGGGFGGGGGGG+GGGSGFGGGAGFGGG+G GGG+G
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120

Query: 121 GGAGGGGGGGFGGGGGLGGGAGGGFGGGAGGGGGLP 154
           GGAGGGGG G GGGGGLGGGAGGGFGGGAG GGG P
Sbjct: 121 GGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGYP 156

BLAST of Lag0018168 vs. NCBI nr
Match: KAA0065825.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-16
Identity = 131/160 (81.88%), Postives = 139/160 (86.88%), Query Frame = 0

Query: 1   MTSKILFLLLLGAFVCTTSGARKL-TPSFEEEKFFHRPRFGGGGFGGGGGGGF--GGGGG 60
           M SKI+FL+ LGAF+ TTSGARKL T SF++EKFFHRPR+GGGG GGGGGGGF  GGGGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGS--GGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGG 120
           LGGGSGGGFGGGS  GGG GGG G GGGGGFGGGGGGGLGGGSGFGGGAGFGGG+G GGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120

Query: 121 IGGGAGGGGGGGF--GGGGGLGGGAGGGFGGGAGGGGGLP 154
           +GGG G GGGGGF  GGGGGLGGGAGGGFG GAG GGG P
Sbjct: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160

BLAST of Lag0018168 vs. NCBI nr
Match: XP_011650511.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-14
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = 0

Query: 1   MTSKILFLLLLGAFVCTTSGARKL-TPSFEEEKFFHRPRFGGGGFGGGGGGGF--GGGGG 60
           M SKI+FL+ LGAF+ +TSGARKL T SF++EKFF RPRFGGGG GGGGGGGF  GGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGS--GGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGG 120
           LGGGSGGGFGGGS  GGG GGG G GGGGGFGGGGGGGLGGGSGFGGGAGFGGG+G G G
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGLG 120

Query: 121 IGGGAGGGGGGGFGGGGGLGGGAGGGFGGGAGGGGGLP 154
            GGGAGGGGG G GGGGGLGGGAGGGFGGGAG GGG P
Sbjct: 121 GGGGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGFP 158

BLAST of Lag0018168 vs. NCBI nr
Match: XP_002529919.2 (glycine-rich protein 5 [Ricinus communis])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 126/167 (75.45%), Postives = 134/167 (80.24%), Query Frame = 0

Query: 1   MTSKILFLLLLGAFVCTTSGARKLT---PSFEEEKFFHRPRF-------GGGGFGGGGGG 60
           M SK+  +LLLGAFVCT++ AR L     SFE+EKFF RPR        GGGGFGGGGGG
Sbjct: 4   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPRSGGGLGGGGGGGFGGGGGG 63

Query: 61  GFGGGGGLGGGSGGGFGGGSGGGFGG--GGGAGGGGGFGGGGGGGLGGGSGFGGGA--GF 120
           G GGGGG GGG+  GFGGG+GGG GG  GGGAGGGGGFGGGGGGGLGGGSGFGGGA  GF
Sbjct: 64  GLGGGGGAGGGA--GFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGGF 123

Query: 121 GGGAGAGGGIGGGAGGGGGGGFGGGGGLGGGAGGGFGGGAGGGGGLP 154
           GGGAGAGGG+GGGAGGGGG G GGGGGLGGGAGGGFG G G GGGLP
Sbjct: 124 GGGAGAGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGAGGGLGGGLP 168

BLAST of Lag0018168 vs. NCBI nr
Match: EEF32473.1 (GRP3S, putative [Ricinus communis])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 126/167 (75.45%), Postives = 134/167 (80.24%), Query Frame = 0

Query: 1   MTSKILFLLLLGAFVCTTSGARKLT---PSFEEEKFFHRPRF-------GGGGFGGGGGG 60
           M SK+  +LLLGAFVCT++ AR L     SFE+EKFF RPR        GGGGFGGGGGG
Sbjct: 1   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPRSGGGLGGGGGGGFGGGGGG 60

Query: 61  GFGGGGGLGGGSGGGFGGGSGGGFGG--GGGAGGGGGFGGGGGGGLGGGSGFGGGA--GF 120
           G GGGGG GGG+  GFGGG+GGG GG  GGGAGGGGGFGGGGGGGLGGGSGFGGGA  GF
Sbjct: 61  GLGGGGGAGGGA--GFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGGF 120

Query: 121 GGGAGAGGGIGGGAGGGGGGGFGGGGGLGGGAGGGFGGGAGGGGGLP 154
           GGGAGAGGG+GGGAGGGGG G GGGGGLGGGAGGGFG G G GGGLP
Sbjct: 121 GGGAGAGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGAGGGLGGGLP 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065824.11.7e-1783.97glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96... [more]
KAA0065825.14.2e-1681.88glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa][more]
XP_011650511.11.0e-1482.28glycine-rich cell wall structural protein-like [Cucumis sativus][more]
XP_002529919.22.0e-1075.45glycine-rich protein 5 [Ricinus communis][more]
EEF32473.12.0e-1075.45GRP3S, putative [Ricinus communis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 3..19
score: 31.62
coord: 143..153
score: 36.84
coord: 116..126
score: 39.77
coord: 88..103
score: 54.69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018168.1Lag0018168.1mRNA