Lag0018166 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018166
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiontransmembrane protein 50A
Locationchr5: 17874344 .. 17875626 (+)
RNA-Seq ExpressionLag0018166
SyntenyLag0018166
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCCCAATCCCTCCACATTTCTCCCGTTCCTTTCACTTCTCTTTTCTTTCTTCGCTTTTGCCGCCTCTGGATTTGCCTTTCAAATTCCGCCGTCTGCGCTTTTCCCACTGGAAGACTTGCTGTTGCCGTCCGACGCCCATGATTTGGTGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCAGAGCCGTGTTCAGTGTCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGTCGTATCCTTCGTCCACTACCTCCCAGGTTCTCTAATCTTGCTTCGCTCTTTATTCATTTACCAGTCCACGCCAGGTATAATTCGCGCTTATGGTTTTTTACGTTGCTCTAGTATTGGGGTTGTAGAAAATAAAGTGTCTGGATTGGAGGTTCAATCTTGGCTTCTCCGAGTACCTTCCAGCAGGTTGATATATATATTTAGAGATCTCTTACAAAATGCATTCAGTTTTGATTTTCCTTATGCTTTACTTATCGCTGTGTGTTATTGTTTTGCTGTGCATATGTGGATTACAAAGACAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTACTAAAATGACAAGAAACAGAACGGATAAGACATGGGAGTACTGTTTTTTATCTCTCGGAATGAAAGACAAATTCGAAGCCTTTTTTTTTGTTCTAGCATTATTATCCTTCTCTATTGTTCTAATATTGAAATAATTGATTTCAAGAAGGCATTGGAGTTAGTTGCTGAGACGATACCATTCTTTTATTAATATTTATTTCGCCTACTGCTTCCTTACCAAAATTGTTCTCGTAATCATAATTTAAGACTCAACTTCTACATCTTATTGCTATTCTAACATAGCAAAGAAATTACATTGATTAGAAAATTGTTCTCTGTATCAAAAACAAAATTTGTATTCAACAATAAAATTTTTTGACGGTGCTCTGGTATTGGGGTTGTAGGTTTTTGACGAGGCTTGAACGAAAGAATAGAGACAGCGTCGGACGGCAACAACGAGTCTTCCAGTGGGACAAGCGCATATGGCGGAATTTGAAAGGCAAATTCAGTGGCGGCAAAAGCGAAAAAGAAAAGAGAAGTGAAAGGAACGAGAGAAATGTGGAGGGATTGGGGTTCATTATCTCGATCGGAGCTCCCAGCCAGGACGACAACGGAGAGGGAGGGGAGCGGCGGAGAGAAAGAAGGAAGTGGTGGAGAGAAAAGAGAGTAATGCGGAGCCGCTGGACCTTTTGTAAGAGGCACTTCTGGAGGTAA

mRNA sequence

ATGAACCCCAATCCCTCCACATTTCTCCCGTTCCTTTCACTTCTCTTTTCTTTCTTCGCTTTTGCCGCCTCTGGATTTGCCTTTCAAATTCCGCCGTCTGCGCTTTTCCCACTGGAAGACTTGCTGTTGCCGTCCGACGCCCATGATTTGGTGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCAGAGCCGTGTTCAGTGTCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGTCGTATCCTTCGTCCACTACCTCCCAGGTTCTCTAATCTTGCTTCGCTCTTTATTCATTTACCAGTCCACGCCAGGTATAATTCGCGCTTATGGTTTTTTACGTTGCTCTAGTATTGGGGTTGTAGAAAATAAAGTGTCTGGATTGGAGGTTCAATCTTGGCTTCTCCGAGTACCTTCCAGCAGGTTTTTGACGAGGCTTGAACGAAAGAATAGAGACAGCGTCGGACGGCAACAACGAGTCTTCCAGTGGGACAAGCGCATATGGCGGAATTTGAAAGGCAAATTCAGTGGCGGCAAAAGCGAAAAAGAAAAGAGAAGTGAAAGGAACGAGAGAAATGTGGAGGGATTGGGGTTCATTATCTCGATCGGAGCTCCCAGCCAGGACGACAACGGAGAGGGAGGGGAGCGGCGGAGAGAAAGAAGGAAGTGGTGGAGAGAAAAGAGAGTAATGCGGAGCCGCTGGACCTTTTGTAAGAGGCACTTCTGGAGGTAA

Coding sequence (CDS)

ATGAACCCCAATCCCTCCACATTTCTCCCGTTCCTTTCACTTCTCTTTTCTTTCTTCGCTTTTGCCGCCTCTGGATTTGCCTTTCAAATTCCGCCGTCTGCGCTTTTCCCACTGGAAGACTTGCTGTTGCCGTCCGACGCCCATGATTTGGTGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCAGAGCCGTGTTCAGTGTCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGTCGTATCCTTCGTCCACTACCTCCCAGGTTCTCTAATCTTGCTTCGCTCTTTATTCATTTACCAGTCCACGCCAGGTATAATTCGCGCTTATGGTTTTTTACGTTGCTCTAGTATTGGGGTTGTAGAAAATAAAGTGTCTGGATTGGAGGTTCAATCTTGGCTTCTCCGAGTACCTTCCAGCAGGTTTTTGACGAGGCTTGAACGAAAGAATAGAGACAGCGTCGGACGGCAACAACGAGTCTTCCAGTGGGACAAGCGCATATGGCGGAATTTGAAAGGCAAATTCAGTGGCGGCAAAAGCGAAAAAGAAAAGAGAAGTGAAAGGAACGAGAGAAATGTGGAGGGATTGGGGTTCATTATCTCGATCGGAGCTCCCAGCCAGGACGACAACGGAGAGGGAGGGGAGCGGCGGAGAGAAAGAAGGAAGTGGTGGAGAGAAAAGAGAGTAATGCGGAGCCGCTGGACCTTTTGTAAGAGGCACTTCTGGAGGTAA

Protein sequence

MNPNPSTFLPFLSLLFSFFAFAASGFAFQIPPSALFPLEDLLLPSDAHDLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPGSLILLRSLFIYQSTPGIIRAYGFLRCSSIGVVENKVSGLEVQSWLLRVPSSRFLTRLERKNRDSVGRQQRVFQWDKRIWRNLKGKFSGGKSEKEKRSERNERNVEGLGFIISIGAPSQDDNGEGGERRRERRKWWREKRVMRSRWTFCKRHFWR
Homology
[Close]
BLAST of Lag0018166 vs. NCBI nr
Match: XP_004140320.1 (transmembrane protein 50A [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-13
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. NCBI nr
Match: KAA0067394.1 (transmembrane protein 50A [Cucumis melo var. makuwa] >TYK26535.1 transmembrane protein 50A [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-13
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. NCBI nr
Match: KGN50994.1 (hypothetical protein Csa_008144 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-13
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. NCBI nr
Match: XP_022993057.1 (transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-13
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. NCBI nr
Match: XP_008460472.1 (PREDICTED: transmembrane protein 50A [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-13
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. ExPASy TrEMBL
Match: A0A5D3DT37 (Transmembrane protein 50A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001240 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. ExPASy TrEMBL
Match: A0A6J1JRP9 (transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. ExPASy TrEMBL
Match: A0A0A0KQ70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387940 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. ExPASy TrEMBL
Match: A0A1S3CCJ8 (transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 49 DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG 93
          DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Sbjct: 2  DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPG 45

[Close]
BLAST of Lag0018166 vs. ExPASy TrEMBL
Match: A0A6J1FCW9 (transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111444629 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-14
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 49  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPGSLILLRSL 101
           DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG    + +L
Sbjct: 2   DLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAAL 53

[Close]
BLAST of Lag0018166 vs. TAIR 10
Match: AT1G36980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-15
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 49  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPGSLILLRSL 101
           DL ELW+IFGPG + AVF  GWWFWVDAVVCSS+ V FVHYLPG    L +L
Sbjct: 2   DLAELWAIFGPGFSGAVFGTGWWFWVDAVVCSSIQVPFVHYLPGIFASLGAL 53

The following BLAST results are available for this feature:
BLAST of Lag0018166 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140320.11.4e-1388.64transmembrane protein 50A [Cucumis sativus][more]
KAA0067394.11.4e-1388.64transmembrane protein 50A [Cucumis melo var. makuwa] >TYK26535.1 transmembrane p... [more]
KGN50994.11.4e-1388.64hypothetical protein Csa_008144 [Cucumis sativus][more]
XP_022993057.11.4e-1388.64transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane prote... [more]
XP_008460472.11.4e-1388.64PREDICTED: transmembrane protein 50A [Cucumis melo][more]
BLAST of Lag0018166 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0018166 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DT376.8e-1488.64Transmembrane protein 50A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1JRP96.8e-1488.64transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1[more]
A0A0A0KQ706.8e-1488.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387940 PE=3 SV=1[more]
A0A1S3CCJ86.8e-1488.64transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1[more]
A0A6J1FCW98.9e-1476.92transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111444629 PE=... [more]
BLAST of Lag0018166 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G36980.12.1e-1569.23unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007919Uncharacterised protein family UPF0220PANTHERPTHR13180SMALL MEMBRANE PROTEIN-RELATEDcoord: 46..98
NoneNo IPR availablePANTHERPTHR13180:SF3OS02G0566900 PROTEINcoord: 46..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018166.1Lag0018166.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component GO:0016021 integral component of membrane