Lag0018157 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018157
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr5: 17726092 .. 17726731 (+)
RNA-Seq ExpressionLag0018157
SyntenyLag0018157
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACTTCTCGTACTCAAACACGAAGAATGTTTTGCAGCCACCGCCAGGTTTTGCATCATCCAGTGCGCCTAAAGAAGAATAACCTGGGGGAGATGGTGGCTATGTTTATAAAAGAACAACAAGTGTTGAATGTGAATCTCCAGACAACAGTTAATAACCACGACACAGCTCTGAAAAATATGGAAGTTCAAATAGGAAAGACCGCTTCAGCGGTGAATGCCCTTCAGAAGGGAAAATTTTCAAGCGACACTGAACCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTAAGAAGTGGTAGGACCCTGGAGATCAGTTCAGAGCAAAAGAAGAAAGAAGATAAGAGAAAAGGGTGAAGATGAAAGGGCTAAGGCACAAAAAGCCTCCTCTGAAAGGTCCCAACATCCTCCTATCTCTATTGATTTAAATTGTGATGTTTCTAACTCTTTTGCAGAAAAGAAAGAAGATGAAAAGAAGAATGACAGGCATGAAGAGAAACTGAACGAGGAAGAAGTGGTTCCATGCAACTATCACGACGAGGCTCGCACATTAGCCTGCACAAACGGAGGGGCGAATGTCCAACCTTTGACTACAGGGAGTTGCATTTTCCTCAACGCTTTAAAAATGTTAAATTAG

mRNA sequence

ATGAGAACTTCTCGTACTCAAACACGAAGAATGTTTTGCAGCCACCGCCAGGTTTTGCATCATCCAGTGCGCCTAAAGAAGAATAACCTGGGGGAGATGGTGGCTATGTTTATAAAAGAACAACAAGTGTTGAATGTGAATCTCCAGACAACAGTTAATAACCACGACACAGCTCTGAAAAATATGGAAGTTCAAATAGGAAAGACCGCTTCAGCGGTGAATGCCCTTCAGAAGGGAAAATTTTCAAGCGACACTGAACCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTAAGAAGTGAAAAGAAAGAAGATGAAAAGAAGAATGACAGGCATGAAGAGAAACTGAACGAGGAAGAAGTGGTTCCATGCAACTATCACGACGAGGCTCGCACATTAGCCTGCACAAACGGAGGGGCGAATGTCCAACCTTTGACTACAGGGAGTTGCATTTTCCTCAACGCTTTAAAAATGTTAAATTAG

Coding sequence (CDS)

ATGAGAACTTCTCGTACTCAAACACGAAGAATGTTTTGCAGCCACCGCCAGGTTTTGCATCATCCAGTGCGCCTAAAGAAGAATAACCTGGGGGAGATGGTGGCTATGTTTATAAAAGAACAACAAGTGTTGAATGTGAATCTCCAGACAACAGTTAATAACCACGACACAGCTCTGAAAAATATGGAAGTTCAAATAGGAAAGACCGCTTCAGCGGTGAATGCCCTTCAGAAGGGAAAATTTTCAAGCGACACTGAACCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTAAGAAGTGAAAAGAAAGAAGATGAAAAGAAGAATGACAGGCATGAAGAGAAACTGAACGAGGAAGAAGTGGTTCCATGCAACTATCACGACGAGGCTCGCACATTAGCCTGCACAAACGGAGGGGCGAATGTCCAACCTTTGACTACAGGGAGTTGCATTTTCCTCAACGCTTTAAAAATGTTAAATTAG

Protein sequence

MRTSRTQTRRMFCSHRQVLHHPVRLKKNNLGEMVAMFIKEQQVLNVNLQTTVNNHDTALKNMEVQIGKTASAVNALQKGKFSSDTEPNPREQCKMVTLRSEKKEDEKKNDRHEEKLNEEEVVPCNYHDEARTLACTNGGANVQPLTTGSCIFLNALKMLN
Homology
BLAST of Lag0018157 vs. NCBI nr
Match: XP_022159119.1 (uncharacterized protein LOC111025551 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-09
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 48  LQTTVNNHDTALKNMEVQIGKTASAVNALQKGKFSSDTEPNPREQCKMVTLRS------- 107
           ++  +  + TA+KNMEVQIG+ AS +N +QKGKF SDTE NPRE CK VTLRS       
Sbjct: 1   MEVKLEGNTTAIKNMEVQIGQMASTLNIMQKGKFPSDTEVNPREHCKAVTLRSGKELQEP 60

Query: 108 EKKEDEKKNDRHEEKLNEEEVV 123
           EKK+ E+     EE+ N+EEVV
Sbjct: 61  EKKKMEEPVITTEERENKEEVV 82

BLAST of Lag0018157 vs. NCBI nr
Match: XP_024019991.1 (uncharacterized protein LOC112091203 [Morus notabilis])

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-08
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 37  FIKEQQVLNVNLQTTVNNHDTALKNMEVQIGKTASAVNALQKGKFSSDTEPNPREQCKMV 96
           F K++  L+ N++T  NN +  +K++EVQIG+ A+AV     GKF SDTEPNP++ CK +
Sbjct: 301 FNKDEARLD-NIETHCNNMNATMKSLEVQIGQLANAVKGQSSGKFPSDTEPNPKDHCKAI 360

Query: 97  TLRSEKKEDEKKNDRHEEKLNEEEV 122
           TLRSE++ +  K    E+K+ EEEV
Sbjct: 361 TLRSEEEVEAPK--PQEDKIKEEEV 382

BLAST of Lag0018157 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-08
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 0

Query: 17  QVLHHPVRLKKNNLGEMVAMFIKE-----QQVLN--VNLQTTVNNHDTALKNMEVQIGKT 76
           Q   HP   KK++L +++  FI E      ++ N    ++  +  + T++KNMEVQIG+ 
Sbjct: 279 QFTSHPAE-KKSSLEDLLGAFINECRSRASRIENQVEGMEVKLEGNTTSIKNMEVQIGQI 338

Query: 77  ASAVNALQKGKFSSDTEPNPREQCKMVTLRS-------EKKEDEKKNDRHEEKLNEEEVV 123
           A  +N +QKGKF SD E  PRE CK VTLRS       EKK+ E+     EE+ N+EEVV
Sbjct: 339 APTLNTMQKGKFPSDIEVKPREHCKAVTLRSGKELQEPEKKKMEEPVITTEERENKEEVV 397

BLAST of Lag0018157 vs. NCBI nr
Match: XP_024032903.1 (uncharacterized protein LOC112095347 [Morus notabilis])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-07
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 0

Query: 12  FCSHRQVLHHP------VRLKKNNLGEMVAMFIKE-------QQVLNVNLQTTVNNHDTA 71
           + ++R VL  P      V  KK ++ ++++ FI E        +    N++T  NN +  
Sbjct: 301 YANNRNVLQPPSGFNQQVVEKKPSVEDLLSTFIVETRGRFNKDEARLDNIETHCNNMNAT 360

Query: 72  LKNMEVQIGKTASAVNALQKGKFSSDTEPNPREQCKMVTLRSEKKEDEKKNDRHEEKLNE 131
           +K++EVQIG+ A+ V     GKF SDTEPNP++ CK +TLRS K+ +  K    E+K  E
Sbjct: 361 MKSLEVQIGQLANVVKGQSSGKFPSDTEPNPKDHCKAITLRSGKEVEAPK--PQEDKTEE 420

BLAST of Lag0018157 vs. NCBI nr
Match: XP_024020480.1 (uncharacterized protein LOC112091333 [Morus notabilis])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-07
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 0

Query: 12  FCSHRQVLHHP------VRLKKNNLGEMVAMFIKE-------QQVLNVNLQTTVNNHDTA 71
           + ++R VL  P      V  KK ++ ++++ FI E        +    N++T  NN +  
Sbjct: 318 YANNRNVLQPPPGFNQQVVEKKPSVEDLLSTFIVETRGRFNKDEARLDNIETHYNNMNAT 377

Query: 72  LKNMEVQIGKTASAVNALQKGKFSSDTEPNPREQCKMVTLRSEKKEDEKKNDRHEEKLNE 122
           +K++EVQIG+ A+ V     GKF SDTEPNP + CK +TLRS K+ +  K    E+K+ E
Sbjct: 378 MKSLEVQIGQLANTVKGQSSGKFPSDTEPNPNDHCKAITLRSGKEVEAPK--PQEDKIEE 437

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159119.16.8e-0953.66uncharacterized protein LOC111025551 [Momordica charantia][more]
XP_024019991.15.8e-0847.06uncharacterized protein LOC112091203 [Morus notabilis][more]
XP_022157708.15.8e-0841.67uncharacterized protein LOC111024361 [Momordica charantia][more]
XP_024032903.12.9e-0736.09uncharacterized protein LOC112095347 [Morus notabilis][more]
XP_024020480.12.9e-0737.40uncharacterized protein LOC112091333 [Morus notabilis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 95..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018157.1Lag0018157.1mRNA