Lag0018152 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018152
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA mismatch repair protein MSH5
Locationchr5: 17506249 .. 17507133 (+)
RNA-Seq ExpressionLag0018152
SyntenyLag0018152
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGTTTGCTTTAGAATTTTCCCGTAAAAAAAAAGCTTGTGGTACTGTAAATTACAGTGATATTCTTGCTCCCATTACTGCTGCAAACTGATCCTATTACTTGTATAGGCGTTCCAGATGAGGTTATTAAGAGAGCAGCCTCTGTTTTGGATGCCATAGGGAATAATAAGCATGTTGAGCGGCTGCACAATGAGAATTTATCCGCTCATGATAAGCTATACCAGGTCTTTTATGACTTTGAATTTTCCTTGGGGTGTAGTTATTTGTGTAGTTTGCAATACTTATGATTCCTTACCAGTTGTTGACAGAATGATGATGTGATTGAATTTGAACTAAATACAGGATGCGGTCGACAAGTTGCTGGGGCTTGATGTTAACAAGTGTGATCTTAGCCTTTTCTTTCGGGACATATTTCCTTCGTAATTGAACATCTTAAGGTATTCCTGTTTTGCTCTATATATATTTTCATACTTCAATTACAAATTTAGAGTTTAATTTAAATCCTAAACTCTGAAACTTTAACTCTTATTTTATTTAGTTGGCCTATTTGTTTGTCACATGATGTTAAATGACTGCTCTTCAATTAACATGTCACGTCCATGTTGGAGTGATGATGTTAACCATTAGAATTTATTAGATTCAAAATTGAAAGTTATAAGACATAATTAAAATTCTGTTTTTAATCAAAGCTTTTTATAGTTGAGGGACCAAATTGACCCAACTATTAAGGTTTAGCGACCAAATTTGTAATTTTAACTATATTTTTATCTGTACAGTTTTCAATTGTAGCCTTCTCCAGTGAAACTTTCAGGTATGGTTGGCACTTGGCAGAAGGTTCCGTTCCCAGAGTCTGGTCATACAAACAGCACTGGAACGATTAG

mRNA sequence

ATGCTTGGCGTTCCAGATGAGGTTATTAAGAGAGCAGCCTCTGTTTTGGATGCCATAGGGAATAATAAGCATGTTGAGCGGCTGCACAATGAGAATTTATCCGCTCATGATAAGCTATACCAGGATGCGGTCGACAAGTTGCTGGGGCTTGATGTTAACAAGTGTGATCTTAGCCTTTTCTTTCGGGACATATTTCCTTCGTATGGTTGGCACTTGGCAGAAGGTTCCGTTCCCAGAGTCTGGTCATACAAACAGCACTGGAACGATTAG

Coding sequence (CDS)

ATGCTTGGCGTTCCAGATGAGGTTATTAAGAGAGCAGCCTCTGTTTTGGATGCCATAGGGAATAATAAGCATGTTGAGCGGCTGCACAATGAGAATTTATCCGCTCATGATAAGCTATACCAGGATGCGGTCGACAAGTTGCTGGGGCTTGATGTTAACAAGTGTGATCTTAGCCTTTTCTTTCGGGACATATTTCCTTCGTATGGTTGGCACTTGGCAGAAGGTTCCGTTCCCAGAGTCTGGTCATACAAACAGCACTGGAACGATTAG

Protein sequence

MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPSYGWHLAEGSVPRVWSYKQHWND
Homology
[Close]
BLAST of Lag0018152 vs. NCBI nr
Match: XP_023553301.1 (DNA mismatch repair protein MSH5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553302.1 DNA mismatch repair protein MSH5 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-24
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1   MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLF 60
           + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS F
Sbjct: 742 LAGVPDEVIKRAAFVLDAMGNNKHVERLHNENLSAQDKLYQDAVDKLLGLDVNKCDLSRF 801

Query: 61  FRDIFPS 68
           F+ IFPS
Sbjct: 802 FQGIFPS 808

[Close]
BLAST of Lag0018152 vs. NCBI nr
Match: XP_023007704.1 (DNA mismatch repair protein MSH5 isoform X7 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-24
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1   MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLF 60
           + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS F
Sbjct: 680 LAGVPDEVIKRAAFVLDAMGNNKHVERLHNENLSAQDKLYQDAVDKLLGLDVNKCDLSRF 739

Query: 61  FRDIFPS 68
           F+ IFPS
Sbjct: 740 FQGIFPS 746

[Close]
BLAST of Lag0018152 vs. NCBI nr
Match: XP_023007699.1 (DNA mismatch repair protein MSH5 isoform X2 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-24
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1   MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLF 60
           + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS F
Sbjct: 759 LAGVPDEVIKRAAFVLDAMGNNKHVERLHNENLSAQDKLYQDAVDKLLGLDVNKCDLSRF 818

Query: 61  FRDIFPS 68
           F+ IFPS
Sbjct: 819 FQGIFPS 825

[Close]
BLAST of Lag0018152 vs. NCBI nr
Match: XP_023007696.1 (DNA mismatch repair protein MSH5 isoform X1 [Cucurbita maxima] >XP_023007698.1 DNA mismatch repair protein MSH5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-24
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1   MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLF 60
           + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS F
Sbjct: 760 LAGVPDEVIKRAAFVLDAMGNNKHVERLHNENLSAQDKLYQDAVDKLLGLDVNKCDLSRF 819

Query: 61  FRDIFPS 68
           F+ IFPS
Sbjct: 820 FQGIFPS 826

[Close]
BLAST of Lag0018152 vs. NCBI nr
Match: XP_022932275.1 (DNA mismatch repair protein MSH5 isoform X6 [Cucurbita moschata])

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-24
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1   MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLF 60
           + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS F
Sbjct: 680 LAGVPDEVIKRAAFVLDAMGNNKHVERLHNENLSAQDKLYQDAVDKLLGLDVNKCDLSRF 739

Query: 61  FRDIFPS 68
           F+ IFPS
Sbjct: 740 FQGIFPS 746

[Close]
BLAST of Lag0018152 vs. ExPASy Swiss-Prot
Match: F4JEP5 (DNA mismatch repair protein MSH5 OS=Arabidopsis thaliana OX=3702 GN=MSH5 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-12
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 1   MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLF 60
           + GVP+EV+KRAA VLDA  +N +V++L  + +S+ D+ ++DAVDK   LD++K D+  F
Sbjct: 741 LAGVPEEVVKRAAIVLDAFESNNNVDKLSLDKISSQDQAFKDAVDKFAELDISKGDIHAF 800

Query: 61  FRDIFPS 68
           F+DIF S
Sbjct: 801 FQDIFTS 807

[Close]
BLAST of Lag0018152 vs. ExPASy Swiss-Prot
Match: Q6L4V0 (DNA mismatch repair protein MSH5 OS=Oryza sativa subsp. japonica OX=39947 GN=MSH5 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-10
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 1   MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLF 60
           + GVP EV++RA +VL  I + + + R+  E L+A D+ YQDAV KLL  D +K DL  F
Sbjct: 743 LAGVPSEVVQRAVTVLGDIHSKRPIRRMVWEKLAAKDQQYQDAVTKLLAFDPHKGDLVNF 802

Query: 61  FRDIFPS 68
           F+++FPS
Sbjct: 803 FQEVFPS 809

The following BLAST results are available for this feature:
BLAST of Lag0018152 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023553301.12.4e-2488.06DNA mismatch repair protein MSH5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023... [more]
XP_023007704.12.4e-2488.06DNA mismatch repair protein MSH5 isoform X7 [Cucurbita maxima][more]
XP_023007699.12.4e-2488.06DNA mismatch repair protein MSH5 isoform X2 [Cucurbita maxima][more]
XP_023007696.12.4e-2488.06DNA mismatch repair protein MSH5 isoform X1 [Cucurbita maxima] >XP_023007698.1 D... [more]
XP_022932275.12.4e-2488.06DNA mismatch repair protein MSH5 isoform X6 [Cucurbita moschata][more]
BLAST of Lag0018152 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JEP52.2e-1249.25DNA mismatch repair protein MSH5 OS=Arabidopsis thaliana OX=3702 GN=MSH5 PE=2 SV... [more]
Q6L4V04.6e-1047.76DNA mismatch repair protein MSH5 OS=Oryza sativa subsp. japonica OX=39947 GN=MSH... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018152.1Lag0018152.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding