Lag0018106 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018106
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr5: 16352373 .. 16352744 (+)
RNA-Seq ExpressionLag0018106
SyntenyLag0018106
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGATGCTTCTGCAAGAGGGGCCGTTTTGGCAAAAACCTTTAATGAAGCCCATGAGATTTTAGAGAGAATATCAACCAATAGTTGTCAGTGGTCAGATGTTAGAGGCTATAGTAAAAAAGTGAAGAGTGTAATAGAAGTTGATGGTGTGTCTACCATTAGGGCTGATATAACAGCATTAGTTATCGCTCTTAAAGGCATAACTATGGTAACCAATGTTCAGCAGCCACCAGTGGTGGAGGCTGCTGCAGCTATAGACCAAGTGGCAGCCGAATCATGTGTCTATTGTGGTGAAGAGCATAATTATGAGTTTTGCCCCAGTGATGCGTGCTTAAACAACAGTGGACTGAATGTGGATGTTAGGGAATGA

mRNA sequence

ATGGTCGATGCTTCTGCAAGAGGGGCCGTTTTGGCAAAAACCTTTAATGAAGCCCATGAGATTTTAGAGAGAATATCAACCAATAGTTGTCAGTGGTCAGATGTTAGAGGCTATAGTAAAAAAGTGAAGAGTGTAATAGAAGTTGATGGTGTGTCTACCATTAGGGCTGATATAACAGCATTAGTTATCGCTCTTAAAGGCATAACTATGGTAACCAATGTTCAGCAGCCACCAGTGGTGGAGGCTGCTGCAGCTATAGACCAAGTGGCAGCCGAATCATGTGTCTATTGTGGTGAAGAGCATAATTATGAGTTTTGCCCCAGTGATGCGTGCTTAAACAACAGTGGACTGAATGTGGATGTTAGGGAATGA

Coding sequence (CDS)

ATGGTCGATGCTTCTGCAAGAGGGGCCGTTTTGGCAAAAACCTTTAATGAAGCCCATGAGATTTTAGAGAGAATATCAACCAATAGTTGTCAGTGGTCAGATGTTAGAGGCTATAGTAAAAAAGTGAAGAGTGTAATAGAAGTTGATGGTGTGTCTACCATTAGGGCTGATATAACAGCATTAGTTATCGCTCTTAAAGGCATAACTATGGTAACCAATGTTCAGCAGCCACCAGTGGTGGAGGCTGCTGCAGCTATAGACCAAGTGGCAGCCGAATCATGTGTCTATTGTGGTGAAGAGCATAATTATGAGTTTTGCCCCAGTGATGCGTGCTTAAACAACAGTGGACTGAATGTGGATGTTAGGGAATGA

Protein sequence

MVDASARGAVLAKTFNEAHEILERISTNSCQWSDVRGYSKKVKSVIEVDGVSTIRADITALVIALKGITMVTNVQQPPVVEAAAAIDQVAAESCVYCGEEHNYEFCPSDACLNNSGLNVDVRE
Homology
[Close]
BLAST of Lag0018106 vs. NCBI nr
Match: XP_022929949.1 (uncharacterized protein LOC111436411 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 56/110 (50.91%), Postives = 81/110 (73.64%), Query Frame = 0 

Query: 1   MVDASARGAVLAKTFNEAHEILERISTNSCQWSDVRGY-SKKVKSVIEVDGVSTIRADIT 60
           +VDASA GA+L+KT+NEA+EILERI++N+CQW+DVR    +K + V+EVD +S+I A + 
Sbjct: 256 VVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLA 315

Query: 61  ALVIALKGITMVTNVQQPPVVEAAAAIDQVAAESCVYCGEEHNYEFCPSD 110
           ++   L+ + +  +      V  AAAI+Q AAESCVYCGEEH ++ CPS+
Sbjct: 316 SVTNILQNLALGQDSMIKAPVHTAAAINQTAAESCVYCGEEHTFDQCPSN 365

[Close]
BLAST of Lag0018106 vs. NCBI nr
Match: XP_023521407.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.1 bits (279), Expect = 3.5e-21
Identity = 55/110 (50.00%), Postives = 80/110 (72.73%), Query Frame = 0 

Query: 1   MVDASARGAVLAKTFNEAHEILERISTNSCQWSDVRGY-SKKVKSVIEVDGVSTIRADIT 60
           +VDASA GA+L+KT+NEA+EILERI++N+CQW+DVR    +K + V+EVD +S+I A + 
Sbjct: 559 VVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLA 618

Query: 61  ALVIALKGITMVTNVQQPPVVEAAAAIDQVAAESCVYCGEEHNYEFCPSD 110
           ++   L+ + +  +      V  AA I+Q AAESCVYCGEEH ++ CPS+
Sbjct: 619 SVTNILQNLALGQDSMIKAPVHTAAVINQTAAESCVYCGEEHTFDQCPSN 668

[Close]
BLAST of Lag0018106 vs. NCBI nr
Match: XP_022926214.1 (uncharacterized protein LOC111433394 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 54/110 (49.09%), Postives = 79/110 (71.82%), Query Frame = 0 

Query: 1   MVDASARGAVLAKTFNEAHEILERISTNSCQWSDVRGY-SKKVKSVIEVDGVSTIRADIT 60
           +VDASA GA+L+KT+NEA+EILERI++N+CQW+DVR    +K + V+EVD +S+I A + 
Sbjct: 227 VVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLA 286

Query: 61  ALVIALKGITMVTNVQQPPVVEAAAAIDQVAAESCVYCGEEHNYEFCPSD 110
           ++   L+ + +  +      V   A I+Q AAESCVYCGEEH ++ CPS+
Sbjct: 287 SVTNILQNLALGQDSMIKAPVHTVAVINQTAAESCVYCGEEHTFDQCPSN 336

[Close]
BLAST of Lag0018106 vs. NCBI nr
Match: XP_023521781.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-19
Identity = 53/110 (48.18%), Postives = 78/110 (70.91%), Query Frame = 0 

Query: 1   MVDASARGAVLAKTFNEAHEILERISTNSCQWSDVRGY-SKKVKSVIEVDGVSTIRADIT 60
           +VDASA GA+L+KT+NEA+EILERI++N+CQW+DVR    +K + V+EVD +S+I A + 
Sbjct: 15  VVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTQGVLEVDALSSINAQLA 74

Query: 61  ALVIALKGITMVTNVQQPPVVEAAAAIDQVAAESCVYCGEEHNYEFCPSD 110
           ++   L+ + +  +      V  AA I+Q AAESCV CGEEH ++ C S+
Sbjct: 75  SVTNILQNLALGQDSNIKAPVHTAAVINQTAAESCVCCGEEHTFDQCSSN 124

[Close]
BLAST of Lag0018106 vs. NCBI nr
Match: XP_022960432.1 (uncharacterized protein LOC111461168 [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-19
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0 

Query: 1   MVDASARGAVLAKTFNEAHEILERISTNSCQWSDVRGY-SKKVKSVIEVDGVSTIRADIT 60
           +VDASA GA+L+KT+NEA+EILERI++N+CQW+DVR    KK + V+EVD +S+I A + 
Sbjct: 218 VVDASANGAMLSKTYNEAYEILERIASNNCQWADVRSNPGKKTRGVLEVDALSSINAQLA 277

Query: 61  ALVIALKGITMVTNVQQPPVVEAAAAIDQVAAESCVYCGEEHNYEFCP 108
           ++   L+ +              AA + Q A ESCVYCGEEH ++ CP
Sbjct: 278 SVTNILQNLAFGQGTMIKAPAHTAAVMTQTATESCVYCGEEHTFDQCP 325

The following BLAST results are available for this feature:
BLAST of Lag0018106 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929949.11.2e-2150.91uncharacterized protein LOC111436411 [Cucurbita moschata][more]
XP_023521407.13.5e-2150.00LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp.... [more]
XP_022926214.11.0e-2049.09uncharacterized protein LOC111433394 [Cucurbita moschata][more]
XP_023521781.14.3e-1948.18LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pe... [more]
XP_022960432.14.3e-1948.15uncharacterized protein LOC111461168 [Cucurbita moschata][more]
BLAST of Lag0018106 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018106.1Lag0018106.1mRNA