Lag0018087 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018087
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGolgin subfamily A member 6 6-like protein
Locationchr5: 15800348 .. 15801687 (-)
RNA-Seq ExpressionLag0018087
SyntenyLag0018087
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGATCGTTAGACCCATGGTTCACCGCTGCCTTTTGTGTTTGTCGTGAGCCACCGTCGGAGAAGAAGAATAGAGAGGGGGTTGCGGGCTATATGGTTTGAAGCTTCCACTGCACGTTGTTCACTGGAGTCGCGTGCCTTTGCCGGAGGAGAGACGTCGGAGGAGGTGGCTTGGGTGCAGCGGGAGAAATTGGAGATACTGACAGCTGAGGAAGAAAATAATGGATGGAGAAAATAGGCTCTGAGAGGGAGGGAAAGATGGGACACGCATGTTACAATTTTTTTTTCTTTTTTTCTTTTCTTTTTTTTTTCTTTTTTTACAACTAAGATATTTCTTTCAACCGCCAAACTATGAAGGTGGAGCGGAACGAGGCCATCAGCCGCCACCGACTTTGAAGATGGAGCAGAACGAGGTCGTCAGCCGCCAACATTTGAAGATGGAGTGAGACCGAAGCCGTCAAACGCCAACATTTGAAGATGGAGTGAGGCCGAAGCCGTCAACCGCCAACATTTGAAGATGGAGCGAGGCCGAAGCCGTCAATCGCCGACTTTGGAGATGAAGTTGTCGTCAACCGCATCTTACCTTGGGAAGTGATCATCCTCTGATTCAGGCGGAATTCAGGCTGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGAATCAGGCGGAATTCAGGTTGATCATTCACCCTTCACATCTTGCCTCAAGCAGTGATCAACCCCTAATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCTTGATTCAGGAGGAATTCATGATGATCACTTGTCCTTCACCTCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGTAGTGATCAACCCTTGATTCAGGCGGAATTCAGGATGATCACTTGTCCTTCACCTCTTGCCTCAGGCAGTGATCAACTCCTGATTCAGGCGAAATTCAAGATGATCACTTGCCCTTCACATCTTGCCTCAGGTAGTGACCAACCCTTGATTCAGGTGGAATTCAAGATGATCACTTGTCCTTCGCCTCTTGCCTCAGGCAGTGATCAACACCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCATTGATTCAGGCGGAATTCAGGATGATCACTTGTCCTTCACCTCCTGCCTTAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCATGATGATCACTTGCCCTTCACATCTTGTCTCAGGCAGCGATCAACCCCTGATTTAG

mRNA sequence

ATGAGCCGATCGTTAGACCCATGGTTCACCGCTGCCTTTTGTGTTTGTCGTGAGCCACCGTCGGAGAAGAAGAATAGAGAGGGGGTTGCGGGCTATATGGCGGAATTCAGGCTGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGAATCAGGCGGAATTCAGGTTGATCATTCACCCTTCACATCTTGCCTCAAGCAGTGATCAACCCCTAATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCTTGATTCAGGAGGAATTCATGATGATCACTTGTCCTTCACCTCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGTAGTGATCAACCCTTGATTCAGGCGGAATTCAGGATGATCACTTGTCCTTCACCTCTTGCCTCAGGCAGTGATCAACTCCTGATTCAGGCGAAATTCAAGATGATCACTTGCCCTTCACATCTTGCCTCAGGTAGTGACCAACCCTTGATTCAGGTGGAATTCAAGATGATCACTTGTCCTTCGCCTCTTGCCTCAGGCAGTGATCAACACCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCATTGATTCAGGCGGAATTCAGGATGATCACTTGTCCTTCACCTCCTGCCTTAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCATGATGATCACTTGCCCTTCACATCTTGTCTCAGGCAGCGATCAACCCCTGATTTAG

Coding sequence (CDS)

ATGAGCCGATCGTTAGACCCATGGTTCACCGCTGCCTTTTGTGTTTGTCGTGAGCCACCGTCGGAGAAGAAGAATAGAGAGGGGGTTGCGGGCTATATGGCGGAATTCAGGCTGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGAATCAGGCGGAATTCAGGTTGATCATTCACCCTTCACATCTTGCCTCAAGCAGTGATCAACCCCTAATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCTTGATTCAGGAGGAATTCATGATGATCACTTGTCCTTCACCTCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGTAGTGATCAACCCTTGATTCAGGCGGAATTCAGGATGATCACTTGTCCTTCACCTCTTGCCTCAGGCAGTGATCAACTCCTGATTCAGGCGAAATTCAAGATGATCACTTGCCCTTCACATCTTGCCTCAGGTAGTGACCAACCCTTGATTCAGGTGGAATTCAAGATGATCACTTGTCCTTCGCCTCTTGCCTCAGGCAGTGATCAACACCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCATTGATTCAGGCGGAATTCAGGATGATCACTTGTCCTTCACCTCCTGCCTTAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCATGATGATCACTTGCCCTTCACATCTTGTCTCAGGCAGCGATCAACCCCTGATTTAG

Protein sequence

MSRSLDPWFTAAFCVCREPPSEKKNREGVAGYMAEFRLITCPSHLASGSDQPLNQAEFRLIIHPSHLASSSDQPLIQAEFRMITCPSHLASGSDQPLIQEEFMMITCPSPLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMITCPSPLASGSDQLLIQAKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSDQHLIQAEFRMITCPSHLASGSDQPLIQAEFRMITCPSPPALGSDQPLIQAEFMMITCPSHLVSGSDQPLI
Homology
BLAST of Lag0018087 vs. NCBI nr
Match: KAG7335348.1 (hypothetical protein KOW79_001944 [Hemibagrus wyckioides])

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-20
Identity = 63/238 (26.47%), Postives = 105/238 (44.12%), Query Frame = 0

Query: 38  LITCPSHLASGSDQPLNQAEFRLIIHPSHLASSSDQPLIQAEFRMITCPSHLASGSDQPL 97
           L++ P HL + S   +  +   +   P HL +SS   +  +   +++ P HL + S   L
Sbjct: 127 LLSSPHHLITCSHHLITSSPALITSSPHHLITSSPALITSSPHHLLSSPHHLITSSPHHL 186

Query: 98  IQEEFMMITCPSPLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMITCPSPLAS 157
           +     +IT    L + S   L+ +   +ITC  HL + S   L+ +   +ITC   L +
Sbjct: 187 LSSPHHLITSSPALITSSPHHLLSSPHHLITCSHHLITSSPHHLLSSPHHLITCSHHLIT 246

Query: 158 GSDQLLIQAKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSDQHLIQAEFRMITC 217
            S  L+  +   +IT    L + S   +      +ITC   L + S  HL+ +   +ITC
Sbjct: 247 SSPALITSSPHHLITSSPALITSSPALITSSPHHLITCSHHLITSSLDHLLSSPHHLITC 306

Query: 218 PSHLASGS------DQPLIQAEFRMITCPSPPALGSDQPLIQAEFMMITCPSHLVSGS 270
             HL + S         LI +   +IT      L S   L+ +   +ITC  HL++ S
Sbjct: 307 SHHLITCSHHLITCSHHLITSSPALITSSPDHLLSSPHHLLSSPHHLITCSHHLITSS 364

BLAST of Lag0018087 vs. NCBI nr
Match: CAE1322405.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 98.6 bits (244), Expect = 8.9e-17
Identity = 78/215 (36.28%), Postives = 86/215 (40.00%), Query Frame = 0

Query: 36  FRLITC---PSHLASGSDQPLNQAEFRLIIH--PSHLASSSDQPLIQAEFRMITCPSHLA 95
           FRL TC   P+HL S S  P     FRL  +  PSHL SSS  P I         P+HL 
Sbjct: 39  FRL-TCYPLPTHLLSSSVSP--AILFRLTCYRLPSHLLSSSVSPAILFRLTCYPLPTHLL 98

Query: 96  SGSDQPLIQEEFMMITCPSPLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMIT 155
           S S  P I         PS L S SD P I         P+HL S SD P I        
Sbjct: 99  SLSVSPAILFRLTCYPLPSHLPSSSDSPAILFRLTCYPLPTHLLSSSDSPAIFFRLTCYP 158

Query: 156 CPSPLASGSDQLLIQAKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSDQHLIQA 215
            PS L S S    I  +      PSHL S SD P I         P+ L S S    I  
Sbjct: 159 LPSHLLSSSVSPAILFRLTCYLLPSHLLSYSDSPAILFRLTCHRLPTHLLSSSVSPAIVF 218

Query: 216 EFRMITCPSHLASGSDQPLIQAEFRMITCPSPPAL 246
                  P+HL S S  P I   FR+   P P  L
Sbjct: 219 RLTCHCLPTHLLSSSVSPAIL--FRLTCYPLPTHL 248

BLAST of Lag0018087 vs. NCBI nr
Match: MBN9393447.1 (hypothetical protein [Chloroflexi bacterium] >OJV86965.1 hypothetical protein BGO39_28595 [Chloroflexi bacterium 54-19])

HSP 1 Score: 86.3 bits (212), Expect = 4.6e-13
Identity = 63/248 (25.40%), Postives = 110/248 (44.35%), Query Frame = 0

Query: 27  EGVAGYMAEFRLITCPSHLASGSDQPLNQAEFRLII--HPSHLASSSDQPLIQAEFRMIT 86
           +G A  +A  +++T  S  A+     + Q   + I    P+  A+    P  QA    IT
Sbjct: 216 KGAASVVAGSQVVTFASPTATAKGAGIGQTNSQTIAVSSPAATATGIQNPTAQAGSSTIT 275

Query: 87  CPSHLASGSDQPLIQEEFMMITCPSPLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQA 146
             S  A+ S    +Q    ++T  SP A+GS   +  A  ++++  S  AS +     QA
Sbjct: 276 LISPAATPSSDATVQANSQVVTLLSPAATGSGDAVAPANSQVVSVASSSASATGTATGQA 335

Query: 147 EFRMITCPSPLASGSDQLLIQAKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSD 206
              +I   SP+++G       A  + +   S +A+ +   + Q   + +T  SP A+ + 
Sbjct: 336 GSTVIAVASPVSTGQGDATATAASQSLVVTSPIATATGSAVGQATSQSVTLASPAATATG 395

Query: 207 QHLIQAEFRMIT--CPSHLASGSDQPLIQAEFRMITCPSPPALGSDQPL--IQAEFMMIT 266
              +QA  + IT   P+  A+ S     QA   +IT  SP A+GS   +  + ++ + +T
Sbjct: 396 TATVQASSQTITVSSPTATATTSGNATGQAGSSVITLASPAAVGSGAAVAPVVSQTITLT 455

Query: 267 CPSHLVSG 269
            P    SG
Sbjct: 456 GPGATASG 463

BLAST of Lag0018087 vs. NCBI nr
Match: CAE1298543.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-12
Identity = 75/246 (30.49%), Postives = 82/246 (33.33%), Query Frame = 0

Query: 39  ITC---PSHLASGSDQPLNQAEFRLIIHPSHLASSSDQPLIQAEFRMITCPSHLASGSDQ 98
           +TC   P HL S S        F     P HL SSS  P I   F     P  L S S  
Sbjct: 416 LTCYPLPPHLLSSSTSTDILFHFTCYPLPPHLLSSSTSPAILFRFTCYPLPPQLLSSSAS 475

Query: 99  PLIQEEFMMITCPSPLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMITCPSPL 158
           P I         P+ L S S  P+I   F     P HL S S    I       + P  L
Sbjct: 476 PAILFRLTCYPLPTHLLSSSASPVILFHFTCHPLPPHLLSSSTSYAILFHLTCNSLPPHL 535

Query: 159 ASGSDQLLIQAKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSDQHLIQAEFRMI 218
            S S    I   F     P HL S S  P I            L S S    I   F   
Sbjct: 536 LSSSTSPAILFHFTCHPLPPHLLSPSASPAILFRLTCYPLTLHLLSSSTSPAILFHFTCH 595

Query: 219 TCPSHLASGSDQPLIQAEFRMITCPSP-----PAL--GSDQPLIQAEFMMITCPSHLVSG 275
             P HL S S  P I      + C +P     PA+      P I   F     P HL S 
Sbjct: 596 PLPPHLLSPSASPAI------LFCLTPSSYLQPAILFHLTSPAILLHFTCCPLPPHLQSS 655

BLAST of Lag0018087 vs. NCBI nr
Match: XP_036798068.1 (uncharacterized protein LOC118938392 [Oncorhynchus mykiss])

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-10
Identity = 47/167 (28.14%), Postives = 78/167 (46.71%), Query Frame = 0

Query: 106 TCPSPLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMITCPSPLASGSDQLLIQ 165
           T PSP+ S  +Q + +      T PS + S  +Q + +   R  T PSP+ S  +QL+ +
Sbjct: 693 TAPSPVPSAREQLIKELAGHSTTAPSPVPSAREQLIKELAGRSTTAPSPVPSAREQLIKE 752

Query: 166 AKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSDQHLIQAEFRMITCPSHLASGS 225
              +  T PS + S  +Q + ++     T PSP+ S  +Q + +   R  T PS + S  
Sbjct: 753 LAGRSTTAPSPVPSAREQLIKELAGHSTTAPSPVPSAREQLIKELAGRSTTAPSPVPSAR 812

Query: 226 DQPLIQAEFRMITCPSPPALGSDQPLIQAEFMMITCPSHLVSGSDQP 273
           +Q + +   R  T PSP  + S  P        +  P ++ +G D P
Sbjct: 813 EQLIKELAGRSTTAPSP--VPSVPPATS-----VHLPKYICAGMDVP 852

BLAST of Lag0018087 vs. ExPASy TrEMBL
Match: A0A1Q3SFW0 (Uncharacterized protein OS=Chloroflexi bacterium 54-19 OX=1895928 GN=BGO39_28595 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-13
Identity = 63/248 (25.40%), Postives = 110/248 (44.35%), Query Frame = 0

Query: 27  EGVAGYMAEFRLITCPSHLASGSDQPLNQAEFRLII--HPSHLASSSDQPLIQAEFRMIT 86
           +G A  +A  +++T  S  A+     + Q   + I    P+  A+    P  QA    IT
Sbjct: 216 KGAASVVAGSQVVTFASPTATAKGAGIGQTNSQTIAVSSPAATATGIQNPTAQAGSSTIT 275

Query: 87  CPSHLASGSDQPLIQEEFMMITCPSPLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQA 146
             S  A+ S    +Q    ++T  SP A+GS   +  A  ++++  S  AS +     QA
Sbjct: 276 LISPAATPSSDATVQANSQVVTLLSPAATGSGDAVAPANSQVVSVASSSASATGTATGQA 335

Query: 147 EFRMITCPSPLASGSDQLLIQAKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSD 206
              +I   SP+++G       A  + +   S +A+ +   + Q   + +T  SP A+ + 
Sbjct: 336 GSTVIAVASPVSTGQGDATATAASQSLVVTSPIATATGSAVGQATSQSVTLASPAATATG 395

Query: 207 QHLIQAEFRMIT--CPSHLASGSDQPLIQAEFRMITCPSPPALGSDQPL--IQAEFMMIT 266
              +QA  + IT   P+  A+ S     QA   +IT  SP A+GS   +  + ++ + +T
Sbjct: 396 TATVQASSQTITVSSPTATATTSGNATGQAGSSVITLASPAAVGSGAAVAPVVSQTITLT 455

Query: 267 CPSHLVSG 269
            P    SG
Sbjct: 456 GPGATASG 463

BLAST of Lag0018087 vs. ExPASy TrEMBL
Match: A0A286UW21 (Golgin subfamily A member 6 6-like protein OS=Pyrrhoderma noxium OX=2282107 GN=PNOK_0071300 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10
Identity = 62/237 (26.16%), Postives = 104/237 (43.88%), Query Frame = 0

Query: 50   DQPLNQAEFRLIIHPSHLASSSDQPLIQAEFRMITCPSH-LASGSDQPLIQ-EEFMMITC 109
            +QPL Q+E + ++        S+QPL Q+E + +      L    DQP+ Q EE  ++  
Sbjct: 2512 EQPLYQSEEQPVLQEEQPLYQSEQPLYQSEEQPVFQEERPLYQSEDQPVYQSEEQPVLQA 2571

Query: 110  PSPLASGSDQPLIQAEFRMITCPSHLAS-----GSDQPLIQAEFRMITCP-SPLASGSDQ 169
              PL   S+QPL Q+E + +       S       +QP++Q E  +      P+    +Q
Sbjct: 2572 EQPLYQ-SEQPLYQSEDQPVYSEGQYQSSPAYQSEEQPVLQEEQPLYQSEGQPIYQSEEQ 2631

Query: 170  LLIQAKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSDQHLIQAEFRMITCPSHL 229
             + Q +  +      L    DQP+ + E  +     PL   S++  I +E +  + P + 
Sbjct: 2632 PVYQEEQPLYQSEQPLYQSEDQPVYREEQPLYQSEQPLYR-SEEQPIYSEGQYQSSPVYQ 2691

Query: 230  AS-----GSDQPLIQAEFRMITCPSPPALGSDQPLIQAEFMMITCPSHLVSGSDQPL 274
            +        +QPL Q+E  +      PAL  +QPL Q+E  +       V   +QPL
Sbjct: 2692 SEEQPVLQEEQPLYQSEQPLYRSEEQPALQEEQPLYQSEQPLYQSQERPVYQEEQPL 2746

BLAST of Lag0018087 vs. ExPASy TrEMBL
Match: A0A3P8S3J1 (Uncharacterized protein OS=Amphiprion percula OX=161767 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-08
Identity = 61/237 (25.74%), Postives = 85/237 (35.86%), Query Frame = 0

Query: 38  LITCPSHLASGSDQPLNQAEFRLIIHPSHLASSSDQPLIQAEFRMITCPSHLASGSDQPL 97
           LI  PS        PL +    LI+ PS        PLI+    +I  PS        PL
Sbjct: 186 LIEPPSLTLIVPPSPLIEPPSPLIVPPS--------PLIEPPSPLIEPPSLTLIVPPSPL 245

Query: 98  IQEEFMMITCPSPLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMITCPSPLAS 157
           I+    +I  PSPL       ++     +I  PS L       ++     +I  PSPL  
Sbjct: 246 IEPPSPLIEPPSPLIEPPSPLIVPPSLTLIVPPSPLIEPPSPLIVPPSLTLIVPPSPLIE 305

Query: 158 GSDQLLIQAKFKMITCPSHLASGSDQPLIQVEFKMITCPSPLASGSDQHLIQAEFRMITC 217
                LI     +I  PS L       ++     +I  PSPL       LI     +I  
Sbjct: 306 PPSLTLIVPPSPLIVPPSPL-------IVPPSLTLIEPPSPLIVPPSLTLIVPPSPLIVP 365

Query: 218 PSHLASGSDQPLIQAEFRMITCPSPPALGSDQPLIQAEFMMITCPSHLVSGSDQPLI 275
           PS        PLI+     +  P  P +    PLI+   + +  P   +     PLI
Sbjct: 366 PSLTLIEPPSPLIEPPSLTLIVPPSPLIEPPSPLIEPPSLTLIVPPSPLIEPPSPLI 407

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7335348.12.3e-2026.47hypothetical protein KOW79_001944 [Hemibagrus wyckioides][more]
CAE1322405.18.9e-1736.28unnamed protein product [Sepia pharaonis][more]
MBN9393447.14.6e-1325.40hypothetical protein [Chloroflexi bacterium] >OJV86965.1 hypothetical protein BG... [more]
CAE1298543.12.3e-1230.49unnamed protein product [Sepia pharaonis][more]
XP_036798068.12.1e-1028.14uncharacterized protein LOC118938392 [Oncorhynchus mykiss][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1Q3SFW02.2e-1325.40Uncharacterized protein OS=Chloroflexi bacterium 54-19 OX=1895928 GN=BGO39_28595... [more]
A0A286UW213.9e-1026.16Golgin subfamily A member 6 6-like protein OS=Pyrrhoderma noxium OX=2282107 GN=P... [more]
A0A3P8S3J12.8e-0825.74Uncharacterized protein OS=Amphiprion percula OX=161767 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018087.1Lag0018087.1mRNA