Lag0018086 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018086
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr5: 15797867 .. 15800176 (+)
RNA-Seq Expression	Lag0018086
Synteny	Lag0018086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAACAACTACTGGAATCGCAACTGATAGAGCTTCCTAAGTGTAAACGACTAGAAGAGATGGAGAAAGTCGATGATCCTAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCATCCTAAAAGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAAAATCCTAAGAAATCTCAACCTAAGAGGAAGAGAAGTAAAGAGTTTTCTCAACCTTGACAGCCGGTGACTTTGAATGAATTCTTCTCCAAAACTTTCCACAAAAATGAAAAAGAAAACCTTGCAGCTTCTTACTGCATCGACGTAGAAGAAGTTGATAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGTTCAACCTAAAAGAAAGATGGAGAGTTGAAACTTTTCGATGAAGTAAACAGCGACGAGAAGCTTCATTGTAGCATCCCATCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAAGCTTTTAAAATGTAAAAACTCCTTATCGTAAGAGTCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATCTTGAACTACGTTATGACTTGATCCCTGTTCCTCAAGGGTACGTAGGCAACTTAAAGAAAACTTTAAGTTTAGTCTCTATAAACAAAAAAGAAAGTGCAACAAATATCGAAGCAGAACAATGAAAACTGAAGAAATTCATCACTACTGGGGCAACACAACAAATTGAAGTTGTACATCGTTATAAATGTGAAGCTACGAGTTGGATGGATAAAAGAAGACTTCATTCCTCTAAATTCAATGTCTCGCTAGCCTCAAGTTCGTTGTTTCACTCACCCTAAGTTCGTTGTTCCCTCTTCTTCAAGTTTGAAGGTTCTCTCGCGTTTCGCTGTCCTTTCTCTTCAAGTTTGAAGAACGCAGTTCCTTCTCTCCAAGTTTGAAGAATGCTCCTTCTCTCCAAGTTCGAAGGTTCCCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCCTGCTTCGCTGCAGTTCCTTTCTCCAAGTTCGAAGGTTCCCGCGTTTCACTCCAGCTCCTTCTCTCCAAGTTCGAATGTTCTCCCGCGCTTCGTTGCAGCTCCTTCTCTCCAAGCTCGAAGGTTCTCCCGCGCGTCGCTGCAGTCCCTCTCTCCAAGTTTGAAAGTTCTCCCGCTCTTCGCTACAGTTCCTTCAAGATTGAAGGTTCTCCCGCGCTTCGCTACAGTCCCTTCTCTCCAAGTTCGAAGGTTATTATGTGCTTCTCTGCAATTCCTTCTCTCCAAAGTTCAAAGGTTCTCCTACGCTTCACTGTAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCCTACGCTTTGTTGTTGTTCCTTCATCAAAGTTCAAAGGTTCTCCACCACTGTCGTTTCTTCTTCAAGTTTGAAGGTCCCTCATCGTCGTCGTTCCTTCTTCAAGTTGAGAGTTTCTATCGTTCTTTAATCAAGCTCGAAGGTTCTGTAGATCAATTTAAAAGTTTGGAGGCTTTGCCATTATTTTGTCTCTAAGAGTTATCGCTCTGACTTTGCTTCATCTTCAAAGTTGGTGGTGATTGACAGTGTCGCTTCATCTTCAAAGTTGGTGGTGATTTACGACATCGCTTCATCTTCATAGTTGACGGTGATTGACGGCGTTGTTTCATCTCCAAAGTCGACGATTGACGGCGTCGCTTCATCTTCAAGTTGACGGCGATTGACGGCATCACTTCATCTTTATTGCTGGCATTGCTTCATCTTCCAAGTTGGCGGCAGTTGACGACCTCGCTTCACCTTCAAAGGTTGGCAGTTGAAAGCTTCTTCTTCGCTTCATCTTCAAAGGTTGACAGTGAGAACTTCAGCTTCGCTTCATATTCAAAGGTTGGCGATGCAAGTGGGCAAGTGATCAGCTTGAATTTCGCCTAA

mRNA sequence

ATGTTGGAACAACTACTGGAATCGCAACTGATAGAGCTTCCTAAGTGTAAACGACTAGAAGAGATGGAGAAAGTCGATGATCCTAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCATCCTAAAAGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAACCGGTGACTTTGAATGAATTCTTCTCCAAAACTTTCCACAAAAATGAAAAAGAAAACCTTGCAGCTTCTTACTGCATCGACGTAGAAGAAGTTGATAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTGAAGCCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAAGCTTTTAAAATAACGCAGTTCCTTCTCTCCAAGTTTGAAGAATGCTCCTTCTCTCCAAGTTCGAAGGTTCCCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCCTGCTTCGCTGCAGTTCCTTTCTCCAAGTTCGAAGGTTCCCGCGTTTCACTCCAGCTCCTTCTCTCCAAGTTCGAATGTTCTCCCGCGCTTCGTTGCAGCTCCTTCTCTCCAAGCTCGAAGGTTCTCCCGCGCGTCGCTGCAGTCCCTCTCTCCAAGTTTGAAAGTTCTCCCGCTCTTCGCTACAGTTCCTTCAAGATTGAAGGTTCTCCCGCGCTTCGCTACAGTCCCTTCTCTCCAAGTTCGAAGGTTATTATGTGCTTCTCTGCAATTCCTTCTCTCCAAAGTTCAAAGGTTCTCCTACGCTTCACTGTAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCCTACGCTTTGTTGTTGTTCCTTCATCAAAGTTCAAAGGTTCTCCACCACTGTCGTTTCTTCTTCAAGTTTGAAGGTCCCTCATCGTCGTCGTTCCTTCTTCAATTGACGACCTCGCTTCACCTTCAAAGGTTGGCAGTTGAAAGCTTCTTCTTCGCTTCATCTTCAAAGGTTGACAGTGAGAACTTCAGCTTCGCTTCATATTCAAAGGTTGGCGATGCAAGTGGGCAAGTGATCAGCTTGAATTTCGCCTAA

Coding sequence (CDS)

ATGTTGGAACAACTACTGGAATCGCAACTGATAGAGCTTCCTAAGTGTAAACGACTAGAAGAGATGGAGAAAGTCGATGATCCTAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCATCCTAAAAGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAACCGGTGACTTTGAATGAATTCTTCTCCAAAACTTTCCACAAAAATGAAAAAGAAAACCTTGCAGCTTCTTACTGCATCGACGTAGAAGAAGTTGATAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTGAAGCCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAAGCTTTTAAAATAACGCAGTTCCTTCTCTCCAAGTTTGAAGAATGCTCCTTCTCTCCAAGTTCGAAGGTTCCCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCCTGCTTCGCTGCAGTTCCTTTCTCCAAGTTCGAAGGTTCCCGCGTTTCACTCCAGCTCCTTCTCTCCAAGTTCGAATGTTCTCCCGCGCTTCGTTGCAGCTCCTTCTCTCCAAGCTCGAAGGTTCTCCCGCGCGTCGCTGCAGTCCCTCTCTCCAAGTTTGAAAGTTCTCCCGCTCTTCGCTACAGTTCCTTCAAGATTGAAGGTTCTCCCGCGCTTCGCTACAGTCCCTTCTCTCCAAGTTCGAAGGTTATTATGTGCTTCTCTGCAATTCCTTCTCTCCAAAGTTCAAAGGTTCTCCTACGCTTCACTGTAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCCTACGCTTTGTTGTTGTTCCTTCATCAAAGTTCAAAGGTTCTCCACCACTGTCGTTTCTTCTTCAAGTTTGAAGGTCCCTCATCGTCGTCGTTCCTTCTTCAATTGACGACCTCGCTTCACCTTCAAAGGTTGGCAGTTGAAAGCTTCTTCTTCGCTTCATCTTCAAAGGTTGACAGTGAGAACTTCAGCTTCGCTTCATATTCAAAGGTTGGCGATGCAAGTGGGCAAGTGATCAGCTTGAATTTCGCCTAA

Protein sequence

MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKIELDLDEPVTLNEFFSKTFHKNEKENLAASYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQFLLSKFEECSFSPSSKVPASLQFLLSKFEGSCFAAVPFSKFEGSRVSLQLLLSKFECSPALRCSSFSPSSKVLPRVAAVPLSKFESSPALRYSSFKIEGSPALRYSPFSPSSKVIMCFSAIPSLQSSKVLLRFTVVPSLQVRRFSYALLLFLHQSSKVLHHCRFFFKFEGPSSSSFLLQLTTSLHLQRLAVESFFFASSSKVDSENFSFASYSKVGDASGQVISLNFA

Homology

[Close]

BLAST of Lag0018086 vs. NCBI nr
Match: KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 4.4e-47
Identity = 121/228 (53.07%), Postives = 144/228 (63.16%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQL+E QLI+L  CKR  +  KVDDP YCKYHRVI HPVE+CF+LK+LILKLA E KI
Sbjct: 161 MLEQLIEKQLIQLLGCKRPGQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKI 220

Query: 61  ELDLDEP--------------VTLNEFFSKTF---HKNEKENLAASYCIDV--------- 120
           +LD+DEP              +TL EF  ++F   H  E   + A +   +         
Sbjct: 221 QLDIDEPIKGKDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNYDS 280

Query: 121 -EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSV 180
            EEVDNS + +QRTSVFDRIKP TTR  VFQR+SMAT EEENQC  ST+TR SAF+RLS+
Sbjct: 281 YEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRLSI 340

Query: 181 STSKKSRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQF 202
           STSKK R STS FDRLK+K             +DQ   E K+ K   F
Sbjct: 341 STSKKHRPSTSAFDRLKMK-------------NDQQQREMKSLKAKPF 375

[Close]

BLAST of Lag0018086 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-43
Identity = 123/285 (43.16%), Postives = 154/285 (54.04%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQLLE+QLI+LP+CKR E+  KVDDP YCKYHRVI HPVE+CF+LK+LILKLA E KI
Sbjct: 448 MLEQLLENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKI 507

Query: 61  ELDLDE---------------------------PVTLNEFFSKTFHKNEKENLA------ 120
           ELD+DE                            +TL EF  ++F +++ E +       
Sbjct: 508 ELDIDEVAQTNHAIEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACH 567

Query: 121 ASYCIDVE-------EVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVS 180
           A+  ++V+       EV+NS +  QRTSVFDRIKP TTR SVFQR+S+AT EEENQC   
Sbjct: 568 AASIVEVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTF 627

Query: 181 TFTRPSAFQRLSVSTSKKSRSSTSVFDRLK------------------------------ 196
            +TR S  +RLS+ST KK R STS FDRLK                              
Sbjct: 628 IYTRTSTSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSC 687

[Close]

BLAST of Lag0018086 vs. NCBI nr
Match: KAA0065608.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK07179.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 6.6e-43
Identity = 115/228 (50.44%), Postives = 139/228 (60.96%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQL+E QLI+LP+CKR E+  KVDDP YCKYHRVI H +E+CF+LK+LILKLA + KI
Sbjct: 1   MLEQLIEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHLIEKCFVLKELILKLAHKNKI 60

Query: 61  ELDLDEPVTLNE--------------FFSKTF---HKNEKENLAASYCIDV--------- 120
           ELD+DE    N                + ++F   H  E   + A +   +         
Sbjct: 61  ELDIDEVAQTNHAAVNMTSSVSPSILLYDQSFLEDHPEEILEVTACHTTSIVEVDNSYDS 120

Query: 121 -EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSV 180
            EEVDNS + +QRT VFDRIKP TTR SVFQR+SMA  EEE QC  ST+TR S F+RLS+
Sbjct: 121 YEEVDNSNEIKQRTFVFDRIKPLTTRSSVFQRLSMAMKEEEKQCPTSTYTRTSTFKRLSI 180

Query: 181 STSKKSRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQF 202
           STSKK R STS FDRLK       +TN      DQ   E K+ K   F
Sbjct: 181 STSKKDRPSTSAFDRLK-------MTN------DQQQKEMKSLKAKPF 215

[Close]

BLAST of Lag0018086 vs. NCBI nr
Match: TYK15207.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 1.9e-42
Identity = 116/223 (52.02%), Postives = 141/223 (63.23%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQLLE+QLI+LPKCKR ++  KVDDP YCKYHRVI HPVE+CF+LK++ILKLA E KI
Sbjct: 137 MLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKCFLLKEMILKLAREKKI 196

Query: 61  ELDLDE---------PVTLNEFFSKTF---HKNEKENLAASYCIDV----------EEVD 120
           ELD+ E          +TL+   S  F   H  E   + A + + +          EEVD
Sbjct: 197 ELDIYEVAQTNHVAVEMTLSVPPSTHFLNDHLEEVSEVTACHAVGIVEVDNNYASSEEVD 256

Query: 121 NSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSVSTSKK 180
           NS + +QRT VFDRIKP  TR S+FQR SMAT EE+NQC +ST T+ SAF+RLS+STSK+
Sbjct: 257 NSNEVKQRTYVFDRIKPSITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKR 316

Query: 181 SRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQF 202
            R  TS FDRLK       +TN      DQ   E K  K   F
Sbjct: 317 DRPLTSDFDRLK-------MTN------DQQQREMKTLKAKPF 346

[Close]

BLAST of Lag0018086 vs. NCBI nr
Match: KAA0066166.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 4.3e-42
Identity = 116/223 (52.02%), Postives = 140/223 (62.78%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQLLE+QLI+LPKCKR ++  KVDDP YCKYHRVI HPVE+CF+LK +ILKLA E KI
Sbjct: 137 MLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKCFLLKKMILKLAREKKI 196

Query: 61  ELDLDE---------PVTLNEFFSKTF---HKNEKENLAASYCIDV----------EEVD 120
           ELD+ E          +TL+   S  F   H  E   + A + + +          EEVD
Sbjct: 197 ELDIYEVAQTNHVAVEMTLSVPPSTHFLNDHLEEVSEVTACHAVGIVEVDNNYASSEEVD 256

Query: 121 NSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSVSTSKK 180
           NS + +QRT VFDRIKP  TR S+FQR SMAT EE+NQC +ST T+ SAF+RLS+STSK+
Sbjct: 257 NSNEVKQRTYVFDRIKPSITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKR 316

Query: 181 SRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQF 202
            R  TS FDRLK       +TN      DQ   E K  K   F
Sbjct: 317 DRPLTSDFDRLK-------MTN------DQQQREMKTLKAKPF 346

[Close]

BLAST of Lag0018086 vs. ExPASy TrEMBL
Match: A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-47
Identity = 121/228 (53.07%), Postives = 144/228 (63.16%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQL+E QLI+L  CKR  +  KVDDP YCKYHRVI HPVE+CF+LK+LILKLA E KI
Sbjct: 161 MLEQLIEKQLIQLLGCKRPGQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKI 220

Query: 61  ELDLDEP--------------VTLNEFFSKTF---HKNEKENLAASYCIDV--------- 120
           +LD+DEP              +TL EF  ++F   H  E   + A +   +         
Sbjct: 221 QLDIDEPIKGKDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNYDS 280

Query: 121 -EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSV 180
            EEVDNS + +QRTSVFDRIKP TTR  VFQR+SMAT EEENQC  ST+TR SAF+RLS+
Sbjct: 281 YEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRLSI 340

Query: 181 STSKKSRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQF 202
           STSKK R STS FDRLK+K             +DQ   E K+ K   F
Sbjct: 341 STSKKHRPSTSAFDRLKMK-------------NDQQQREMKSLKAKPF 375

[Close]

BLAST of Lag0018086 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-43
Identity = 123/285 (43.16%), Postives = 154/285 (54.04%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQLLE+QLI+LP+CKR E+  KVDDP YCKYHRVI HPVE+CF+LK+LILKLA E KI
Sbjct: 448 MLEQLLENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKI 507

Query: 61  ELDLDE---------------------------PVTLNEFFSKTFHKNEKENLA------ 120
           ELD+DE                            +TL EF  ++F +++ E +       
Sbjct: 508 ELDIDEVAQTNHAIEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACH 567

Query: 121 ASYCIDVE-------EVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVS 180
           A+  ++V+       EV+NS +  QRTSVFDRIKP TTR SVFQR+S+AT EEENQC   
Sbjct: 568 AASIVEVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTF 627

Query: 181 TFTRPSAFQRLSVSTSKKSRSSTSVFDRLK------------------------------ 196
            +TR S  +RLS+ST KK R STS FDRLK                              
Sbjct: 628 IYTRTSTSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSC 687

[Close]

BLAST of Lag0018086 vs. ExPASy TrEMBL
Match: A0A5D3CA53 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00600 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-43
Identity = 115/228 (50.44%), Postives = 139/228 (60.96%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQL+E QLI+LP+CKR E+  KVDDP YCKYHRVI H +E+CF+LK+LILKLA + KI
Sbjct: 1   MLEQLIEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHLIEKCFVLKELILKLAHKNKI 60

Query: 61  ELDLDEPVTLNE--------------FFSKTF---HKNEKENLAASYCIDV--------- 120
           ELD+DE    N                + ++F   H  E   + A +   +         
Sbjct: 61  ELDIDEVAQTNHAAVNMTSSVSPSILLYDQSFLEDHPEEILEVTACHTTSIVEVDNSYDS 120

Query: 121 -EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSV 180
            EEVDNS + +QRT VFDRIKP TTR SVFQR+SMA  EEE QC  ST+TR S F+RLS+
Sbjct: 121 YEEVDNSNEIKQRTFVFDRIKPLTTRSSVFQRLSMAMKEEEKQCPTSTYTRTSTFKRLSI 180

Query: 181 STSKKSRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQF 202
           STSKK R STS FDRLK       +TN      DQ   E K+ K   F
Sbjct: 181 STSKKDRPSTSAFDRLK-------MTN------DQQQKEMKSLKAKPF 215

[Close]

BLAST of Lag0018086 vs. ExPASy TrEMBL
Match: A0A5D3CTF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00840 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 9.3e-43
Identity = 116/223 (52.02%), Postives = 141/223 (63.23%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQLLE+QLI+LPKCKR ++  KVDDP YCKYHRVI HPVE+CF+LK++ILKLA E KI
Sbjct: 137 MLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKCFLLKEMILKLAREKKI 196

Query: 61  ELDLDE---------PVTLNEFFSKTF---HKNEKENLAASYCIDV----------EEVD 120
           ELD+ E          +TL+   S  F   H  E   + A + + +          EEVD
Sbjct: 197 ELDIYEVAQTNHVAVEMTLSVPPSTHFLNDHLEEVSEVTACHAVGIVEVDNNYASSEEVD 256

Query: 121 NSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSVSTSKK 180
           NS + +QRT VFDRIKP  TR S+FQR SMAT EE+NQC +ST T+ SAF+RLS+STSK+
Sbjct: 257 NSNEVKQRTYVFDRIKPSITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKR 316

Query: 181 SRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQF 202
            R  TS FDRLK       +TN      DQ   E K  K   F
Sbjct: 317 DRPLTSDFDRLK-------MTN------DQQQREMKTLKAKPF 346

[Close]

BLAST of Lag0018086 vs. ExPASy TrEMBL
Match: A0A5A7VII4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001730 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-42
Identity = 116/223 (52.02%), Postives = 140/223 (62.78%), Query Frame = 0


Query: 1   MLEQLLESQLIELPKCKRLEEMEKVDDPKYCKYHRVIGHPVERCFILKDLILKLAMEGKI 60
           MLEQLLE+QLI+LPKCKR ++  KVDDP YCKYHRVI HPVE+CF+LK +ILKLA E KI
Sbjct: 137 MLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKCFLLKKMILKLAREKKI 196

Query: 61  ELDLDE---------PVTLNEFFSKTF---HKNEKENLAASYCIDV----------EEVD 120
           ELD+ E          +TL+   S  F   H  E   + A + + +          EEVD
Sbjct: 197 ELDIYEVAQTNHVAVEMTLSVPPSTHFLNDHLEEVSEVTACHAVGIVEVDNNYASSEEVD 256

Query: 121 NSKKGEQRTSVFDRIKPPTTRPSVFQRMSMATTEEENQCLVSTFTRPSAFQRLSVSTSKK 180
           NS + +QRT VFDRIKP  TR S+FQR SMAT EE+NQC +ST T+ SAF+RLS+STSK+
Sbjct: 257 NSNEVKQRTYVFDRIKPSITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKR 316

Query: 181 SRSSTSVFDRLKVKPNLIILTNPTSQGSDQDHDEDKAFKITQF 202
            R  TS FDRLK       +TN      DQ   E K  K   F
Sbjct: 317 DRPLTSDFDRLK-------MTN------DQQQREMKTLKAKPF 346

The following BLAST results are available for this feature:

BLAST of Lag0018086 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065984.1	4.4e-47	53.07	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp...	[more]
KAA0056121.1	2.3e-43	43.16	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065608.1	6.6e-43	50.44	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK07179.1 retrotranspos...	[more]
TYK15207.1	1.9e-42	52.02	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0066166.1	4.3e-42	52.02	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0018086 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0018086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFA5	2.1e-47	53.07	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7URH1	1.1e-43	43.16	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CA53	3.2e-43	50.44	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CTF5	9.3e-43	52.02	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VII4	2.1e-42	52.02	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Lag0018086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018086.1	Lag0018086.1	mRNA