Lag0018057 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018057
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Locationchr5: 14932276 .. 14933365 (+)
RNA-Seq ExpressionLag0018057
SyntenyLag0018057
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCGTACCTTGCATCATTTTCGACGCAAGCTCCTAATCAAGCCCTTTATCGAGGGAGTCATGTGGACGACTCAGTGTTCAGCCCATACATGGAGTTTGATAAGGAAATTTCTGATGATTCAAGCAGTAAATGAAGATTAGGGTTTCCAGAAGAGAGACTATGCACAATAAAAAGTGTTAATGTCTATAAGGATATGGATATAACACATCTGTGTTTAGTCTTAGACGTCATATTACTGCTCAAGTTCAAGATGTCAAGTGACAAGTTTAATGAGACCACCTGTTTGAAAAGCTACCTCAGCATATATTGTCAAAAGAGTTGGATTGCTCAAAGTTTACAGATAGAAGGACTTGGCAGATGCATTCAAGAAGCCATATGAATACAATATTGATATATGGTGCCAGAATACTCAAATCTTCAACGCATCGAAAATGAAGGCATTGAAACTTTGAAGGAATATGCTCAAAGATGGAGAGAAAATGAGTGGCCCAAGTGCAACCCTCATTGGCAGATAAAGAAATATTAGCAATCCTCATAAACATTCAAAAGAGCTTCGTATTATGGCAAGATGATTGGAAATGCCTCAACGAACTTCTCTGGCATTAATCAGAGAAAGGATTAAAAACGAAGAGTTAAAAATGGGCATGAAAATGCAGAAGCCACCACCTTAAAAGGCATGGAAGAAGAAGAAGTGAATGAGACTATTCTAGGGCAAAGAATTATTAGCCCACAATATTTCATCACCACACATTTAAATTGGTGAACTACACTCAGAGTCCTTAGCAAAATGGACAAAATCAGTCAAATGCACCAAATCAACAAGGTGCTAAGAATAGTTAGAGATCGACGCAGGAAGACCCCATACGACCTCCATATCCTAAGTGGAAAGCACACAATATGAGCACCATGCAGGGGCATTGGAAAACTCTACAGAGATTTGCCTCCCCCTGAAATTTGAGGTGCAAAGTTTAATCAAAGCCAGATGGCAGAAGGCTGATGAAGCAGGAGAGGAGCAAGGTATCAATCAAAATCTTCTCCCGAATGATGAGAATTTTGCTATAAATTGGATTGAAGTGGATCATTGA

mRNA sequence

ATGACGTCGTACCTTGCATCATTTTCGACGCAAGCTCCTAATCAAGCCCTTTATCGAGGGAGTCATGTGGACGACTCAGTGTTCAGCCCATACATGGAGTTTGATAAGGAAATTTCTGATGATTCAAGCAGGGCATTGGAAAACTCTACAGAGATTTGCCTCCCCCTGAAATTTGAGGTGCAAAGTTTAATCAAAGCCAGATGGCAGAAGGCTGATGAAGCAGGAGAGGAGCAAGGTATCAATCAAAATCTTCTCCCGAATGATGAGAATTTTGCTATAAATTGGATTGAAGTGGATCATTGA

Coding sequence (CDS)

ATGACGTCGTACCTTGCATCATTTTCGACGCAAGCTCCTAATCAAGCCCTTTATCGAGGGAGTCATGTGGACGACTCAGTGTTCAGCCCATACATGGAGTTTGATAAGGAAATTTCTGATGATTCAAGCAGGGCATTGGAAAACTCTACAGAGATTTGCCTCCCCCTGAAATTTGAGGTGCAAAGTTTAATCAAAGCCAGATGGCAGAAGGCTGATGAAGCAGGAGAGGAGCAAGGTATCAATCAAAATCTTCTCCCGAATGATGAGAATTTTGCTATAAATTGGATTGAAGTGGATCATTGA

Protein sequence

MTSYLASFSTQAPNQALYRGSHVDDSVFSPYMEFDKEISDDSSRALENSTEICLPLKFEVQSLIKARWQKADEAGEEQGINQNLLPNDENFAINWIEVDH
Homology
[Close]
BLAST of Lag0018057 vs. NCBI nr
Match: KAA0034830.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-06
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 27 VFSPYMEFDKEISDDSSRALENSTEICLPLKFEVQSLIKARWQKADEAGEEQGINQNLLP 86
          VFSP +      S      + +STE C PL+ +VQSL+KARW K  + GEE  +NQN LP
Sbjct: 27 VFSPNVG-QTNYSPSYQNEVGHSTENCFPLEAKVQSLVKARWLKFKKIGEEPDVNQNPLP 86

Query: 87 NDENFAINWIE 98
          N+E  AIN ++
Sbjct: 87 NNEGPAINVVD 96

[Close]
BLAST of Lag0018057 vs. NCBI nr
Match: TYK28914.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-06
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 27  VFSPYMEFDKEISDDSSRALENSTEICLPLKFEVQSLIKARWQKADEAGEEQGINQNLLP 86
           VFSP +      S      + NSTE C PL+ +VQSL+KA+W K  + GEE  +NQN LP
Sbjct: 73  VFSPNVG-QTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLP 132

Query: 87  NDENFAINWIE 98
           N+E   IN ++
Sbjct: 133 NNEGPTINVVD 142

[Close]
BLAST of Lag0018057 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-05
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 45   ALENSTEICLPLKFEVQSLIKARWQKADEAGEEQGINQNLLPNDENFAINWIE 98
            A+ +STE C PLK +VQSL+KA W +  + GEE  +NQN LPN E  +IN ++
Sbjct: 1002 AVGHSTENCFPLKAKVQSLVKAGWLRFKKTGEEPDVNQNPLPNHEGPSINAVD 1054

[Close]
BLAST of Lag0018057 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-05
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 45  ALENSTEICLPLKFEVQSLIKARWQKADEAGEEQGINQNLLPNDENFAINWIE 98
           A+ +STE C PLK +VQSL+KA W +  + GEE  +NQN LPN E  +IN ++
Sbjct: 441 AVGHSTENCFPLKAKVQSLVKAGWLRFKKTGEEPDVNQNPLPNHEGPSINAVD 493

[Close]
BLAST of Lag0018057 vs. NCBI nr
Match: KAA0046608.1 (uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-05
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 45  ALENSTEICLPLKFEVQSLIKARWQKADEAGEEQGINQNLLPNDENFAINWIE 98
           A+ +STE C PLK +VQSL+KA W +  + GEE  +NQN LPN E  +IN ++
Sbjct: 195 AVGHSTENCFPLKAKVQSLVKAGWLRFKKTGEEPDVNQNPLPNHEGPSINAVD 247

The following BLAST results are available for this feature:
BLAST of Lag0018057 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034830.17.5e-0646.48Gag-pro-like protein [Cucumis melo var. makuwa][more]
TYK28914.19.8e-0645.07Gag-pro-like protein [Cucumis melo var. makuwa][more]
KAA0033221.18.3e-0550.94uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa][more]
KAA0061241.18.3e-0550.94uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa][more]
KAA0046608.18.3e-0550.94uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa][more]
BLAST of Lag0018057 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018057.1Lag0018057.1mRNA