Lag0017982 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017982
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr5: 12564252 .. 12564668 (+)
RNA-Seq Expression	Lag0017982
Synteny	Lag0017982

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAATATTTATCCAAAGCTAAAGAGTTATTGGCCAAGTTCAAAAAGTGTGAGGTTAGACAAATCCTGAGATCCCAAAATGTTAATGCTGATTCATTAGCTCGTTTGGCAGCAGCTTACAAAACAAAATTGAATAGAATAGTTCCAGTTGAGGTTTTGTTCAAGCCAACAGTATGTGGAAAAGAGGTAGTAGTGGTAGATGAGCAAGTTTCCATGGGAGGTCGAGCCAGGACAAAAGTCAAAACCTCTGTGGGCGAGGCCGACCATGAGGGGGGCTCGTGGATGGATCCATTGGTGAAATATCTGGCGAATGGGGATCTACCTACAGACAGAGCTGAAGCCAAGAGGTTACAGAGGCGAGCATCGCATTATGTGCTGAGAGATTTTTATAGAATGTTGAAGCAAAAGAAATGA

mRNA sequence

ATGGTTGAATATTTATCCAAAGCTAAAGAGTTATTGGCCAAGTTCAAAAAGTGTGAGGTTAGACAAATCCTGAGATCCCAAAATGTTAATGCTGATTCATTAGCTCGTTTGGCAGCAGCTTACAAAACAAAATTGAATAGAATAGTTCCAGTTGAGGTTTTGTTCAAGCCAACAGTATGTGGAAAAGAGGTAGTAGTGGTAGATGAGCAAGTTTCCATGGGAGGTCGAGCCAGGACAAAAGTCAAAACCTCTGTGGGCGAGGCCGACCATGAGGGGGGCTCGTGGATGGATCCATTGGTGAAATATCTGGCGAATGGGGATCTACCTACAGACAGAGCTGAAGCCAAGAGGTTACAGAGGCGAGCATCGCATTATGTGCTGAGAGATTTTTATAGAATGTTGAAGCAAAAGAAATGA

Coding sequence (CDS)

ATGGTTGAATATTTATCCAAAGCTAAAGAGTTATTGGCCAAGTTCAAAAAGTGTGAGGTTAGACAAATCCTGAGATCCCAAAATGTTAATGCTGATTCATTAGCTCGTTTGGCAGCAGCTTACAAAACAAAATTGAATAGAATAGTTCCAGTTGAGGTTTTGTTCAAGCCAACAGTATGTGGAAAAGAGGTAGTAGTGGTAGATGAGCAAGTTTCCATGGGAGGTCGAGCCAGGACAAAAGTCAAAACCTCTGTGGGCGAGGCCGACCATGAGGGGGGCTCGTGGATGGATCCATTGGTGAAATATCTGGCGAATGGGGATCTACCTACAGACAGAGCTGAAGCCAAGAGGTTACAGAGGCGAGCATCGCATTATGTGCTGAGAGATTTTTATAGAATGTTGAAGCAAAAGAAATGA

Protein sequence

MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLVKYLANGDLPTDRAEAKRLQRRASHYVLRDFYRMLKQKK

Homology

[Close]

BLAST of Lag0017982 vs. NCBI nr
Match: XP_022158579.1 (uncharacterized protein LOC111025033 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 1   MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVC 60
           M +YLS+ +  L +F K E+RQI  +QNVNAD LARLA AY+T L R VPVE+L  P++ 
Sbjct: 401 MAKYLSQVRNQLDQFSKYEIRQIPHAQNVNADVLARLAVAYETDLGRTVPVEILPGPSIE 460

Query: 61  GKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLVKYLANGDLPTDRAEAKRLQR 120
            +E + +D Q               G+ +    +W  PL+KYL +G LPT++ EA++LQR
Sbjct: 461 AQEAMDIDNQ---------------GQPEE---NWKSPLIKYLKDGILPTEKIEAQQLQR 511

Query: 121 RASHYVLRD 130
           RA+ YVL+D
Sbjct: 521 RAARYVLKD 511

[Close]

BLAST of Lag0017982 vs. NCBI nr
Match: XP_022154103.1 (uncharacterized protein LOC111021439 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-18
Identity = 56/129 (43.41%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 1   MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVC 60
           M +YLS+ +  L +F K E+RQI R+QNVNAD+LARLA  Y+T L R VPVE+L  P++ 
Sbjct: 194 MTKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLATTYETDLGRTVPVEILLGPSIE 253

Query: 61  GKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLVKYLANGDLPTDRAEAKRLQR 120
            +E + +D+Q               G+ +    +W   L+KYL +G LPT++ EA++LQ+
Sbjct: 254 AQEAMDIDDQ---------------GQPEE---NWKSLLIKYLKDGILPTEKIEAQQLQQ 304

Query: 121 RASHYVLRD 130
           RA+ YVL+D
Sbjct: 314 RAARYVLKD 304

[Close]

BLAST of Lag0017982 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-17
Identity = 57/129 (44.19%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 1   MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVC 60
           M +YLS+ +  L +F K E+ QI R+QNV+AD+LARLAA Y+T L R VPVE+L +P++ 
Sbjct: 738 MAKYLSQVRNQLDQFSKYEIXQIPRAQNVBADALARLAAXYETDLGRTVPVEILPEPSIE 797

Query: 61  GKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLVKYLANGDLPTDRAEAKRLQR 120
            +E + +D Q               G+ +    S   PL+KYL +G LPT++ EA++LQR
Sbjct: 798 AQEAMDIDNQ---------------GQXEENXKS---PLIKYLKDGILPTEKIEAQQLQR 848

Query: 121 RASHYVLRD 130
           RA+ YVL+D
Sbjct: 858 RAARYVLKD 848

[Close]

BLAST of Lag0017982 vs. NCBI nr
Match: XP_022159204.1 (uncharacterized protein LOC111025623 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-16
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 1   MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVC 60
           M +YLS+ K+ L +F K E+RQI  +QNVNAD+LARLAAAY T L R + VE+L +P++ 
Sbjct: 341 MAKYLSRVKDQLGQFSKFEIRQIPCTQNVNADALARLAAAYGTDLGRTISVEILLEPSIK 400

Query: 61  GKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLVKYLANGDLPTDRAEAKRLQR 120
            +E + +DEQ                       +WM  L+KYL +G LP +  E ++LQR
Sbjct: 401 AQEKMDIDEQ------------------RQSEENWMSHLIKYLKDGILPDEMIEGQQLQR 451

Query: 121 RASHYVLRD 130
           +A+ YVL+D
Sbjct: 461 QAARYVLKD 451

[Close]

BLAST of Lag0017982 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 6.0e-14
Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 1   MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVC 60
           M  YL+KA+ LLA+F+   +RQ+ RS+N NAD LARLA+AY T L R VPVE+L + +V 
Sbjct: 395 MERYLAKARWLLAQFEDYVIRQVPRSENSNADVLARLASAYDTDLPRTVPVEILTESSVD 454

Query: 61  GKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLVKYLANGDLPTDRAEAKRLQR 120
             E++                     E      +WMDP+  +L NG +P D ++A++L+R
Sbjct: 455 QPELM---------------------EITSAQPTWMDPIKDFLVNGSVPADPSQARKLRR 502

Query: 121 RASHYVLRD 130
           +A+HY++++
Sbjct: 515 QAAHYLMQE 502

The following BLAST results are available for this feature:

BLAST of Lag0017982 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158579.1	2.4e-18	44.96	uncharacterized protein LOC111025033 [Momordica charantia]	[more]
XP_022154103.1	6.9e-18	43.41	uncharacterized protein LOC111021439 [Momordica charantia]	[more]
XP_022156571.1	3.4e-17	44.19	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022159204.1	1.0e-16	42.64	uncharacterized protein LOC111025623 [Momordica charantia]	[more]
XP_022156986.1	6.0e-14	38.76	uncharacterized protein LOC111023816 [Momordica charantia]	[more]

BLAST of Lag0017982 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..53 e-value: 4.0E-5 score: 25.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017982.1	Lag0017982.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003676	nucleic acid binding