Lag0017978 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017978
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNA polymerase II elongation factor
Location	chr5: 12464940 .. 12465602 (-)
RNA-Seq Expression	Lag0017978
Synteny	Lag0017978

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAAACCAAAGATTCCAATGCCGCCCACATCGTGGAAATCCCAGTAGACCAAGACCATCATCAAAATCACAACCAAAATCTTATGATCTCTGTGATCCAACAGCACCCACTGAGGCAAATTTCTGAAAGCTCCGGCCATCTACTGCTCCTGAAACTCTGGCAACGAGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGGAGTCTCTGAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCTCTCACCCTCCTCTTCACATCCTCCGATCCCAACGCCTGCCGAAAGTGGTGGGCTCCAGCGGTGGCGGTGGCGGCGACGTCGGGGGTGTTCGTGATCGTGGTGCAGGTGAAGTTGTGGCTGTACTGGAAGGCAGCAGGGCAGTTGCAGAAGGAGAGGAATGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCTTGTTTTAATCTGTCTAAAGAGCCTCAGAGTGGGAAGAGGATGAAGAGCTCCAGTGTGGAGATCAAATGGGGGCCTCTCAATTGGTTCTCAAGGAATTTTATTACCATTTCTCTTGTTTGCTTTGCAGGGCTTGTTTTTGGTGCTTCCAAGTTCATTCTTTGTGGGTTTTGA

mRNA sequence

ATGGCCGAAACCAAAGATTCCAATGCCGCCCACATCGTGGAAATCCCAGTAGACCAAGACCATCATCAAAATCACAACCAAAATCTTATGATCTCTGTGATCCAACAGCACCCACTGAGGCAAATTTCTGAAAGCTCCGGCCATCTACTGCTCCTGAAACTCTGGCAACGAGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGGAGTCTCTGAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCTCTCACCCTCCTCTTCACATCCTCCGATCCCAACGCCTGCCGAAAGTGGTGGGCTCCAGCGGTGGCGGTGGCGGCGACGTCGGGGGTGTTCGTGATCGTGGTGCAGGTGAAGTTGTGGCTGTACTGGAAGGCAGCAGGGCAGTTGCAGAAGGAGAGGAATGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCTTGTTTTAATCTGTCTAAAGAGCCTCAGAGTGGGAAGAGGATGAAGAGCTCCAGTGTGGAGATCAAATGGGGGCCTCTCAATTGGTTCTCAAGGAATTTTATTACCATTTCTCTTGTTTGCTTTGCAGGGCTTGTTTTTGGTGCTTCCAAGTTCATTCTTTGTGGGTTTTGA

Coding sequence (CDS)

ATGGCCGAAACCAAAGATTCCAATGCCGCCCACATCGTGGAAATCCCAGTAGACCAAGACCATCATCAAAATCACAACCAAAATCTTATGATCTCTGTGATCCAACAGCACCCACTGAGGCAAATTTCTGAAAGCTCCGGCCATCTACTGCTCCTGAAACTCTGGCAACGAGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGGAGTCTCTGAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCTCTCACCCTCCTCTTCACATCCTCCGATCCCAACGCCTGCCGAAAGTGGTGGGCTCCAGCGGTGGCGGTGGCGGCGACGTCGGGGGTGTTCGTGATCGTGGTGCAGGTGAAGTTGTGGCTGTACTGGAAGGCAGCAGGGCAGTTGCAGAAGGAGAGGAATGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCTTGTTTTAATCTGTCTAAAGAGCCTCAGAGTGGGAAGAGGATGAAGAGCTCCAGTGTGGAGATCAAATGGGGGCCTCTCAATTGGTTCTCAAGGAATTTTATTACCATTTCTCTTGTTTGCTTTGCAGGGCTTGTTTTTGGTGCTTCCAAGTTCATTCTTTGTGGGTTTTGA

Protein sequence

MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF

Homology

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BLAST of Lag0017978 vs. NCBI nr
Match: XP_004149573.1 (uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 uncharacterized protein LOC101219596 [Cucumis sativus] >KGN56048.1 hypothetical protein Csa_010603 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 8.0e-101
Identity = 186/220 (84.55%), Postives = 200/220 (90.91%), Query Frame = 0


Query: 1   MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEH 60
           MAETKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEH
Sbjct: 1   MAETKDSTAAHIVEIPVEQ---ENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEH 60

Query: 61  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAAT 120
           LFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP  C+KWW PAV + AT
Sbjct: 61  LFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGAT 120

Query: 121 SGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKS 180
           SGVFVIVVQ+KLW+YWKA GQLQKE+ ENRALTRCVQELRMKGSCFNLSKEPQ G RMKS
Sbjct: 121 SGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKS 180

Query: 181 SSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF 221
           SSVEIKWGPL WFSRNFITISL+ F+ ++F  SKFILCGF
Sbjct: 181 SSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

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BLAST of Lag0017978 vs. NCBI nr
Match: XP_008449068.1 (PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo])

HSP 1 Score: 375.2 bits (962), Expect = 3.9e-100
Identity = 184/220 (83.64%), Postives = 200/220 (90.91%), Query Frame = 0


Query: 1   MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEH 60
           MA+TKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEH
Sbjct: 1   MAQTKDSTAAHIVEIPVEQ---ENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEH 60

Query: 61  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAAT 120
           LFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP  C+KWW PAV + AT
Sbjct: 61  LFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGAT 120

Query: 121 SGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKS 180
           SGVFVIVVQ+KLW+YWKA GQLQ+E++ENRALTRC QELRMKGSCFNLSKEPQ G RMKS
Sbjct: 121 SGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKS 180

Query: 181 SSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF 221
           SSVEIKWGPL WFSRNFI ISL+ F+ +VF ASKFILCGF
Sbjct: 181 SSVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

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BLAST of Lag0017978 vs. NCBI nr
Match: XP_038905570.1 (uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 uncharacterized protein LOC120091553 [Benincasa hispida])

HSP 1 Score: 372.5 bits (955), Expect = 2.6e-99
Identity = 186/220 (84.55%), Postives = 201/220 (91.36%), Query Frame = 0


Query: 1   MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEH 60
           MAETKDS  AHIVEIPV+Q++H   NQN MISVIQ HPLRQISESSGHLLLLKLWQRDEH
Sbjct: 1   MAETKDS-GAHIVEIPVEQENH-TQNQNPMISVIQHHPLRQISESSGHLLLLKLWQRDEH 60

Query: 61  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAAT 120
           LFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDPN C+KWW PAVA+ AT
Sbjct: 61  LFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPNVCKKWWVPAVAMGAT 120

Query: 121 SGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKS 180
           SGVFVIVVQ+KLWLYWKA+GQLQ+E+ ENRALTRCVQELRMKGSCFNLSKEPQ G RMKS
Sbjct: 121 SGVFVIVVQLKLWLYWKASGQLQREKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKS 180

Query: 181 SSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF 221
           SSVEIKWGPL WFSRNFITI L+ F+ +VF ASKFILC F
Sbjct: 181 SSVEIKWGPLTWFSRNFITIFLLGFSAIVFAASKFILCAF 218

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BLAST of Lag0017978 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98
Identity = 179/217 (82.49%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 3   ETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLF 62
           ET+DS AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLF
Sbjct: 4   ETRDSGAAHVVEIPAE-------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLF 63

Query: 63  GLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAATSG 122
           GLR+GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWW P VA+ ATSG
Sbjct: 64  GLRVGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSG 123

Query: 123 VFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSS 182
           VFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSSS
Sbjct: 124 VFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSS 183

Query: 183 VEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCG 220
           VEIKWGPL W SRNF+TI L+CF+G+VFGASKFILCG
Sbjct: 184 VEIKWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCG 213

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BLAST of Lag0017978 vs. NCBI nr
Match: KAG7015562.1 (hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.9 bits (943), Expect = 6.3e-98
Identity = 182/218 (83.49%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 3   ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHL 62
           ETKDS  AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHL
Sbjct: 4   ETKDSGAAAHVVEIPAE-------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHL 63

Query: 63  FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAATS 122
           FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWW P VA+ ATS
Sbjct: 64  FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATS 123

Query: 123 GVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSS 182
           GVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSS
Sbjct: 124 GVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 183

Query: 183 SVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCG 220
           SVEIKWGPL W SRNF+TI L+CF+G+VFGASKFILCG
Sbjct: 184 SVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

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BLAST of Lag0017978 vs. ExPASy TrEMBL
Match: A0A0A0L2U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.9e-101
Identity = 186/220 (84.55%), Postives = 200/220 (90.91%), Query Frame = 0


Query: 1   MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEH 60
           MAETKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEH
Sbjct: 1   MAETKDSTAAHIVEIPVEQ---ENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEH 60

Query: 61  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAAT 120
           LFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP  C+KWW PAV + AT
Sbjct: 61  LFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGAT 120

Query: 121 SGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKS 180
           SGVFVIVVQ+KLW+YWKA GQLQKE+ ENRALTRCVQELRMKGSCFNLSKEPQ G RMKS
Sbjct: 121 SGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKS 180

Query: 181 SSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF 221
           SSVEIKWGPL WFSRNFITISL+ F+ ++F  SKFILCGF
Sbjct: 181 SSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

[Close]

BLAST of Lag0017978 vs. ExPASy TrEMBL
Match: A0A1S3BL81 (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.9e-100
Identity = 184/220 (83.64%), Postives = 200/220 (90.91%), Query Frame = 0


Query: 1   MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEH 60
           MA+TKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEH
Sbjct: 1   MAQTKDSTAAHIVEIPVEQ---ENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEH 60

Query: 61  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAAT 120
           LFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP  C+KWW PAV + AT
Sbjct: 61  LFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGAT 120

Query: 121 SGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKS 180
           SGVFVIVVQ+KLW+YWKA GQLQ+E++ENRALTRC QELRMKGSCFNLSKEPQ G RMKS
Sbjct: 121 SGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKS 180

Query: 181 SSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF 221
           SSVEIKWGPL WFSRNFI ISL+ F+ +VF ASKFILCGF
Sbjct: 181 SSVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

[Close]

BLAST of Lag0017978 vs. ExPASy TrEMBL
Match: A0A6J1HN07 (uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.6e-97
Identity = 182/218 (83.49%), Postives = 196/218 (89.91%), Query Frame = 0


Query: 3   ETKDSNAA-HIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHL 62
           ETKDS AA HIVEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHL
Sbjct: 4   ETKDSGAATHIVEIPAE-------NQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHL 63

Query: 63  FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAATS 122
           FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWW P VA+ ATS
Sbjct: 64  FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATS 123

Query: 123 GVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSS 182
           GVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTR VQELRMKGSCFNLSKEPQ G RMKSS
Sbjct: 124 GVFVIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSS 183

Query: 183 SVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCG 220
           SVEIKWGPL W SRNF+TI L+CF+G+VFGASKFILCG
Sbjct: 184 SVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

[Close]

BLAST of Lag0017978 vs. ExPASy TrEMBL
Match: A0A6J1EWB5 (uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC111438709 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.8e-97
Identity = 181/218 (83.03%), Postives = 196/218 (89.91%), Query Frame = 0


Query: 3   ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHL 62
           ETKDS  AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHL
Sbjct: 4   ETKDSGAAAHVVEIPAE-------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHL 63

Query: 63  FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWAPAVAVAATS 122
           FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWW P VA+ ATS
Sbjct: 64  FGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATS 123

Query: 123 GVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSS 182
           GVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSS
Sbjct: 124 GVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSS 183

Query: 183 SVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCG 220
           SVEIKWGPL   SRNF+TI L+CF+G+VFGASKFILCG
Sbjct: 184 SVEIKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 214

[Close]

BLAST of Lag0017978 vs. ExPASy TrEMBL
Match: A0A2P6QLA8 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 9.9e-73
Identity = 140/222 (63.06%), Postives = 178/222 (80.18%), Query Frame = 0


Query: 1   MAETKDSNAAHIVEIPVDQDHHQNHNQNL-MISVIQQHPLRQISESSGHLLLLKLWQRDE 60
           MAE KD +  H+VEIPVD++H Q  + ++ +IS IQ HPL +ISES GHLLLLKLW+R+E
Sbjct: 1   MAEMKDCH-HHVVEIPVDEEHQQKLSSSMTIISAIQHHPLMEISESPGHLLLLKLWRREE 60

Query: 61  HLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS---SDPNACRKWWAPAVA 120
            LFG RI RRET+++ ++++IFQLCC+F +FHA  LT+LFTS   S+  +C+KWW P++ 
Sbjct: 61  DLFGRRIARRETRMDLIRREIFQLCCFFLIFHAFFLTILFTSSVNSEKGSCQKWWIPSIL 120

Query: 121 VAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGK 180
             +TS VFV++VQV LW YWK  GQLQ+E+ ENRAL RC+QELRMKG+ F+LSKEPQSGK
Sbjct: 121 SVSTSVVFVVLVQVNLWRYWKVWGQLQREKIENRALVRCIQELRMKGASFDLSKEPQSGK 180

Query: 181 RMKSSSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILC 219
           R+KSSSVEIKW P+ W S+N ITI LVCFAGLVF ASK +LC
Sbjct: 181 RLKSSSVEIKWKPITWCSQNLITICLVCFAGLVFPASKLMLC 221

[Close]

BLAST of Lag0017978 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 253.4 bits (646), Expect = 1.6e-67
Identity = 133/239 (55.65%), Postives = 168/239 (70.29%), Query Frame = 0


Query: 1   MAETKDSNAAHIVEIPVDQDHHQNHNQNLMIS----------VIQQHPLRQISESSGHLL 60
           MA TKDS   H+VEIPVD++H +   Q  +++          VIQQHPL +ISES GHLL
Sbjct: 1   MAGTKDS---HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLL 60

Query: 61  LLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN----- 120
           LLKLWQR+E LF  R+  +E++LES+K++IFQLCC+F +FH    TL+++SS  +     
Sbjct: 61  LLKLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVV 120

Query: 121 ----ACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRM 180
                C+KWW P+    ATS V V +VQ KL+++WK    + +ERN+NR LTRCV ELRM
Sbjct: 121 KSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRM 180

Query: 181 KGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF 221
           KGS F+LSKEP SGKRMKSSSVEIKW P+ WFS+  ITI L+C AGL F  SKFILCGF
Sbjct: 181 KGSSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCGF 236

[Close]

BLAST of Lag0017978 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-25
Identity = 66/191 (34.55%), Postives = 114/191 (59.69%), Query Frame = 0


Query: 36  QHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSL 95
           +HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLFH++SL
Sbjct: 17  RHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISL 76

Query: 96  TLLF-------TSSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNE 155
            LLF       +S+  +AC++ W P++    +S   +  V+ K  +       L++E+ +
Sbjct: 77  LLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKED 136

Query: 156 NRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPL-NWFSRNFITISLVCFAG 215
            + L +CV+EL+ KG  F+L KE  + +R KS  VE K  P+  W +R+F+T+     + 
Sbjct: 137 AKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSC 196

Query: 216 LVFGASKFILC 219
           LV    + ILC
Sbjct: 197 LVLAMIRLILC 205

The following BLAST results are available for this feature:

BLAST of Lag0017978 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149573.1	8.0e-101	84.55	uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 uncharact...	[more]
XP_008449068.1	3.9e-100	83.64	PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 P...	[more]
XP_038905570.1	2.6e-99	84.55	uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 unchara...	[more]
XP_023553388.1	1.3e-98	82.49	uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]	[more]
KAG7015562.1	6.3e-98	83.49	hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0017978 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017978 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2U7	3.9e-101	84.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1	[more]
A0A1S3BL81	1.9e-100	83.64	uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=...	[more]
A0A6J1HN07	2.6e-97	83.49	uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114...	[more]
A0A6J1EWB5	9.8e-97	83.03	uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A2P6QLA8	9.9e-73	63.06	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4...	[more]

BLAST of Lag0017978 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56120.1	1.6e-67	55.65	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G12870.1	5.8e-25	34.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 142..162
None	No IPR available	PANTHER	PTHR33287	OS03G0453550 PROTEIN	coord: 22..219
None	No IPR available	PANTHER	PTHR33287:SF3	OS03G0453550 PROTEIN	coord: 22..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017978.1	Lag0017978.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane