Lag0017956 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017956
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr5: 12263354 .. 12264836 (-)
RNA-Seq Expression	Lag0017956
Synteny	Lag0017956

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGAAGGGAAACCTTCGGGACACCGAGCAAGCTTGCCAAAGAGGAGGATCACCAATAGAAGGAAAAGACAACTATCAGGTAATGAAGGGGAACCACTAGGGAAAAGACCAAGTTGGTCAAGAAGAAGGGAGATCAAAGCATGAAACAATCAAGTCCCAGGAATGTTTGGGAAGACAAGGAAGCACATGGGAGGGAACAAAAGAAAACGAGGAAACAACGTTGGAAGGAGAAGTAGTAGGTGAAGATATGCACAAGCTTCTGGAGAAACTAAAGCTGGAAGAAGACAAGAGAGTAGTGGAAGTTGAAGATGAAGATATAGAGGAGGCTGACAAAGATTTTGAAAACGCGATTGCGTGCAAAATTCTTACAACCAAATTTATAAATGCAGAAGTTTTCTCGAGGATAATGCCGAAAATATGGGGAATAGAAGGAGTTGTGAAGGTTGAAAAAGTCGGAACAAATGTGTATTTGTGCAAATTCAAGAGGATGAAAGATAAAATTAGAATCATTCGAGGAGGGCCATGGATTTATGACCATGCCATAATAATATTCGATGAACCAAAAGCGAACTGCAACATGGAAGCTCTAGATTTTCAATATGTTTCCTTTTGGATACACTTTCATAACTTACCCTGTGTTTGTTATTGCAGGAAATATGCAGTGGCTTTGGGCAATTAGATAGGTCTCTTTGAAGCAGCAGAGTCTGACGCTTTATGAGAAAATGAAGGGAGAAACTTTAAGGGTCAAAGTGAGAATCAACAATAAAGAACCACTTAAGAGAGGAACAAATGTAAAAGCGGGGTCCATGACGGAAAAAAAGTGGATTCCCATATCGTATGAGAAACTTCCAAACTTTTGTTACTACTGTGGAAGATTGGGTCATGTGGTGCACGAGTGTAACGAGGAAGGATTGGAAAAAAATAAAGAAATAAGCTTTGGGGTAGAATTAAGGGAGACAAACGGAAGTAAAGGATTTTATAAAAGCTGGAGAAGCGACTTTAAACCAGTCGGAGGAAGAGGACCAAGAGGAAGAGGAAGGGGATTCTTCTGGAGAGGCGCGAGAGAAGATATCAATTTGAATGAAAGTTATGAAGAGAAAAATGGAACTGCCGATACCCAAAGCAACATCAGGAAAGGAAGTAACAGTAAGTTGGAGGAAGAAGACAACCGCCATAAAATACAGGAAGTGGGGGAAGATGGCCGAAATAGAGAGGAAGTCAGAAAGGAAGGAGAAAGAGCGGTGGAGGTGTCAACTAGGATCGGTAGACCCAATCAATCAGTAATAGACGAAATAGGCAAAGGACAGATGTTAGGGTCAATAGCAGGAAAAGACAGATCAGGGGAAGGGAAAGAGCCGTTGGAGGAAGGCCTTGGAAGTATCAGTGATGTCGAAATGGGTCAAAGCTGTGGCCCAAGACTTGAAAGGCCAACCATCGACATCCCAAAGAACAAATTAGAGCAAGTTAAGGAAAGCTGA

mRNA sequence

ATGGACATGAAGGGAAACCTTCGGGACACCGAGCAAGCTTGCCAAAGAGGAGGATCACCAATAGAAGGAAAAGACAACTATCAGGAATGTTTGGGAAGACAAGGAAGCACATGGGAGGGAACAAAAGAAAACGAGGAAACAACGTTGGAAGGAGAAGTAGTAGGTGAAGATATGCACAAGCTTCTGGAGAAACTAAAGCTGGAAGAAGACAAGAGAGTAGTGGAAGTTGAAGATGAAGATATAGAGGAGGCTGACAAAGATTTTGAAAACGCGATTGCGTGCAAAATTCTTACAACCAAATTTATAAATGCAGAAGTTTTCTCGAGGATAATGCCGAAAATATGGGGAATAGAAGGAGTTGTGAAGGTCTCTTTGAAGCAGCAGAGTCTGACGCTTTATGAGAAAATGAAGGGAGAAACTTTAAGGGTCAAAGTGAGAATCAACAATAAAGAACCACTTAAGAGAGGAACAAATGTAAAAGCGGGGTCCATGACGGAAAAAAAGTGGATTCCCATATCGTATGAGAAACTTCCAAACTTTTGTTACTACTGTGGAAGATTGGGTCATGTGGTGCACGAGTGTAACGAGGAAGGATTGGAAAAAAATAAAGAAATAAGCTTTGGGGTAGAATTAAGGGAGACAAACGGAAGTAAAGGATTTTATAAAAGCTGGAGAAGCGACTTTAAACCAGTCGGAGGAAGAGGACCAAGAGGAAGAGGAAGGGGATTCTTCTGGAGAGGCGCGAGAGAAGATATCAATTTGAATGAAAGTTATGAAGAGAAAAATGGAACTGCCGATACCCAAAGCAACATCAGGAAAGGAAGTAACAGTAAGTTGGAGGAAGAAGACAACCGCCATAAAATACAGGAAGTGGGGGAAGATGGCCGAAATAGAGAGGAAGTCAGAAAGGAAGGAGAAAGAGCGGTGGAGGTGTCAACTAGGATCGGTAGACCCAATCAATCAGTAATAGACGAAATAGGCAAAGGACAGATGTTAGGGTCAATAGCAGGAAAAGACAGATCAGGGGAAGGGAAAGAGCCGTTGGAGGAAGGCCTTGGAAGTATCAGTGATGTCGAAATGGGTCAAAGCTGTGGCCCAAGACTTGAAAGGCCAACCATCGACATCCCAAAGAACAAATTAGAGCAAGTTAAGGAAAGCTGA

Coding sequence (CDS)

ATGGACATGAAGGGAAACCTTCGGGACACCGAGCAAGCTTGCCAAAGAGGAGGATCACCAATAGAAGGAAAAGACAACTATCAGGAATGTTTGGGAAGACAAGGAAGCACATGGGAGGGAACAAAAGAAAACGAGGAAACAACGTTGGAAGGAGAAGTAGTAGGTGAAGATATGCACAAGCTTCTGGAGAAACTAAAGCTGGAAGAAGACAAGAGAGTAGTGGAAGTTGAAGATGAAGATATAGAGGAGGCTGACAAAGATTTTGAAAACGCGATTGCGTGCAAAATTCTTACAACCAAATTTATAAATGCAGAAGTTTTCTCGAGGATAATGCCGAAAATATGGGGAATAGAAGGAGTTGTGAAGGTCTCTTTGAAGCAGCAGAGTCTGACGCTTTATGAGAAAATGAAGGGAGAAACTTTAAGGGTCAAAGTGAGAATCAACAATAAAGAACCACTTAAGAGAGGAACAAATGTAAAAGCGGGGTCCATGACGGAAAAAAAGTGGATTCCCATATCGTATGAGAAACTTCCAAACTTTTGTTACTACTGTGGAAGATTGGGTCATGTGGTGCACGAGTGTAACGAGGAAGGATTGGAAAAAAATAAAGAAATAAGCTTTGGGGTAGAATTAAGGGAGACAAACGGAAGTAAAGGATTTTATAAAAGCTGGAGAAGCGACTTTAAACCAGTCGGAGGAAGAGGACCAAGAGGAAGAGGAAGGGGATTCTTCTGGAGAGGCGCGAGAGAAGATATCAATTTGAATGAAAGTTATGAAGAGAAAAATGGAACTGCCGATACCCAAAGCAACATCAGGAAAGGAAGTAACAGTAAGTTGGAGGAAGAAGACAACCGCCATAAAATACAGGAAGTGGGGGAAGATGGCCGAAATAGAGAGGAAGTCAGAAAGGAAGGAGAAAGAGCGGTGGAGGTGTCAACTAGGATCGGTAGACCCAATCAATCAGTAATAGACGAAATAGGCAAAGGACAGATGTTAGGGTCAATAGCAGGAAAAGACAGATCAGGGGAAGGGAAAGAGCCGTTGGAGGAAGGCCTTGGAAGTATCAGTGATGTCGAAATGGGTCAAAGCTGTGGCCCAAGACTTGAAAGGCCAACCATCGACATCCCAAAGAACAAATTAGAGCAAGTTAAGGAAAGCTGA

Protein sequence

MDMKGNLRDTEQACQRGGSPIEGKDNYQECLGRQGSTWEGTKENEETTLEGEVVGEDMHKLLEKLKLEEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVKVSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPRGRGRGFFWRGAREDINLNESYEEKNGTADTQSNIRKGSNSKLEEEDNRHKIQEVGEDGRNREEVRKEGERAVEVSTRIGRPNQSVIDEIGKGQMLGSIAGKDRSGEGKEPLEEGLGSISDVEMGQSCGPRLERPTIDIPKNKLEQVKES

Homology

[Close]

BLAST of Lag0017956 vs. NCBI nr
Match: TXG54824.1 (hypothetical protein EZV62_020080 [Acer yangbiense])

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-12
Identity = 59/195 (30.26%), Postives = 96/195 (49.23%), Query Frame = 0


Query: 56  EDMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKI 115
           +++  L E L + EED  V+E  + +IE+  KD +  +  K+LT K +N E F  ++ +I
Sbjct: 4   KEITDLYENLSIAEEDGVVLETSETEIEDGAKDVDCCLVGKVLTGKKVNREAFRSLIEQI 63

Query: 116 WGIEGVVK-----VSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKW 175
           W   G V+     V +   S   +    G+ +RVKV I+  + L+R   +K G   E   
Sbjct: 64  WSPFGQVEQIGEVVEIPADSRECW----GKFMRVKVCIDISKSLRRWLRLKLGKTEEITT 123

Query: 176 IPISYEKLPNFCYYCGRLGHVVHECNEEGLEKN----KEISFGVELRETNGSKGFYKSWR 235
           + + YE+LP FCY CGR+GH + EC +    K         +G  L+   G K +Y++  
Sbjct: 124 VSLKYERLPEFCYACGRVGHGILECLDVDARKQALECTPTKYGAWLKALTGEKLYYRNNS 183

Query: 236 SDFKPVGGRGPRGRG 241
             ++    RG    G
Sbjct: 184 QGYESSSDRGRSTEG 194

[Close]

BLAST of Lag0017956 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-11
Identity = 54/128 (42.19%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 123 VSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCY 182
           V  KQ+++T+ +    E +R         P   GT  K G M ++KWIP+SYEKLP+FCY
Sbjct: 15  VEQKQRAVTVEDDDIDEVVR-------DFPNVHGTIKKLGVMAKEKWIPVSYEKLPDFCY 74

Query: 183 YCGRLGHVVHECNEEGLEKNKEISFGVELRETNG----SKGFYKSWRSDFKPVGGRGPRG 242
            CGR+GHVV EC E G +  +   FGV LR++      SKG  +  RS F    GRG  G
Sbjct: 75  KCGRVGHVVQECKEVGDDGEEGQRFGVWLRKSQTSQSISKGRREEVRSQFTIDRGRG-EG 134

Query: 243 RGRGFFWR 247
           +G   F R
Sbjct: 135 KGIEAFKR 134

[Close]

BLAST of Lag0017956 vs. NCBI nr
Match: TXG48912.1 (hypothetical protein EZV62_024787 [Acer yangbiense])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-10
Identity = 48/166 (28.92%), Postives = 87/166 (52.41%), Query Frame = 0


Query: 53  VVGEDMHKLLEKLKLE-EDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIM 112
           +V  ++ KL EKL L  ED  V E+ DED  + + + E  +  K+L+ K +N + F  ++
Sbjct: 1   MVESEIAKLYEKLSLAGEDGAVHEMADEDQRDGEVEVELCLVGKVLSGKKVNRDAFKNLI 60

Query: 113 PKIWGIEGVVKV-------SLKQQSLTLYEKMK-------------GETLRVKVRINNKE 172
            ++W   G V++         ++ +  + E+++             G+ L+VKV+I+  +
Sbjct: 61  EQLWSPFGRVEIHDVPIICMNRRTAKWMAEQIRWVIDLPFETKECWGKFLKVKVQIDISK 120

Query: 173 PLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEE 198
           PLKR   +K         + + YE+LP FCY CGR+GH   +C+++
Sbjct: 121 PLKRWLRLKLDKYDNIVMVGLKYERLPEFCYVCGRIGHASKDCSDD 166

[Close]

BLAST of Lag0017956 vs. NCBI nr
Match: PON85093.1 (Zinc knuckle CX2CX4HX4C [Trema orientale])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-10
Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = 0


Query: 141 LRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLE 200
           LRV+V+I+  +PL+ G  V+ GS     W+   YEK+P+FC+YCGR+GH V+ C EEG E
Sbjct: 7   LRVRVKIDILKPLRIGAKVRVGSSGPLIWVDFKYEKIPDFCFYCGRVGHSVNYCPEEGSE 66

Query: 201 ---KNKEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPRGRGRGFFWRGAREDINLNES 260
              +  +  +   LR ++ +K F K   +  K  G +G R  G G     A ++I   E 
Sbjct: 67  VMLQKGQFQYREWLRGSSSNKLFSKDITTGRK--GNKGLRSLGLGELPEHAGKEIGAAEL 126

Query: 261 YEEKNGTADTQSNIRKGSNSKLEEEDNR 286
             EK       S  R  SN+    ED++
Sbjct: 127 TGEKTTQLVAASTSRVLSNNSAANEDDK 152

[Close]

BLAST of Lag0017956 vs. NCBI nr
Match: KAE8772589.1 (hypothetical protein D1007_55405 [Hordeum vulgare])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-09
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 135 KMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHEC 194
           K  G+ LRVKV++N  +PL RG+ V+      K W P +YE LPNFCY CG + HV  EC
Sbjct: 161 KAVGKYLRVKVKLNITKPLMRGSMVQIDERGRKSWCPFAYEYLPNFCYTCGVISHVEREC 220

Query: 195 NEEGLEKNKEISFGVELR 213
           N + ++K+++  FG  LR
Sbjct: 221 NTK-VKKDEKAQFGRWLR 237

[Close]

BLAST of Lag0017956 vs. ExPASy TrEMBL
Match: A0A5C7HCW1 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020080 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-13
Identity = 59/195 (30.26%), Postives = 96/195 (49.23%), Query Frame = 0


Query: 56  EDMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKI 115
           +++  L E L + EED  V+E  + +IE+  KD +  +  K+LT K +N E F  ++ +I
Sbjct: 4   KEITDLYENLSIAEEDGVVLETSETEIEDGAKDVDCCLVGKVLTGKKVNREAFRSLIEQI 63

Query: 116 WGIEGVVK-----VSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKW 175
           W   G V+     V +   S   +    G+ +RVKV I+  + L+R   +K G   E   
Sbjct: 64  WSPFGQVEQIGEVVEIPADSRECW----GKFMRVKVCIDISKSLRRWLRLKLGKTEEITT 123

Query: 176 IPISYEKLPNFCYYCGRLGHVVHECNEEGLEKN----KEISFGVELRETNGSKGFYKSWR 235
           + + YE+LP FCY CGR+GH + EC +    K         +G  L+   G K +Y++  
Sbjct: 124 VSLKYERLPEFCYACGRVGHGILECLDVDARKQALECTPTKYGAWLKALTGEKLYYRNNS 183

Query: 236 SDFKPVGGRGPRGRG 241
             ++    RG    G
Sbjct: 184 QGYESSSDRGRSTEG 194

[Close]

BLAST of Lag0017956 vs. ExPASy TrEMBL
Match: A0A5D3C0K2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001040 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-12
Identity = 54/128 (42.19%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 123 VSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCY 182
           V  KQ+++T+ +    E +R         P   GT  K G M ++KWIP+SYEKLP+FCY
Sbjct: 15  VEQKQRAVTVEDDDIDEVVR-------DFPNVHGTIKKLGVMAKEKWIPVSYEKLPDFCY 74

Query: 183 YCGRLGHVVHECNEEGLEKNKEISFGVELRETNG----SKGFYKSWRSDFKPVGGRGPRG 242
            CGR+GHVV EC E G +  +   FGV LR++      SKG  +  RS F    GRG  G
Sbjct: 75  KCGRVGHVVQECKEVGDDGEEGQRFGVWLRKSQTSQSISKGRREEVRSQFTIDRGRG-EG 134

Query: 243 RGRGFFWR 247
           +G   F R
Sbjct: 135 KGIEAFKR 134

[Close]

BLAST of Lag0017956 vs. ExPASy TrEMBL
Match: A0A5C7GX56 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024787 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-10
Identity = 48/166 (28.92%), Postives = 87/166 (52.41%), Query Frame = 0


Query: 53  VVGEDMHKLLEKLKLE-EDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIM 112
           +V  ++ KL EKL L  ED  V E+ DED  + + + E  +  K+L+ K +N + F  ++
Sbjct: 1   MVESEIAKLYEKLSLAGEDGAVHEMADEDQRDGEVEVELCLVGKVLSGKKVNRDAFKNLI 60

Query: 113 PKIWGIEGVVKV-------SLKQQSLTLYEKMK-------------GETLRVKVRINNKE 172
            ++W   G V++         ++ +  + E+++             G+ L+VKV+I+  +
Sbjct: 61  EQLWSPFGRVEIHDVPIICMNRRTAKWMAEQIRWVIDLPFETKECWGKFLKVKVQIDISK 120

Query: 173 PLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEE 198
           PLKR   +K         + + YE+LP FCY CGR+GH   +C+++
Sbjct: 121 PLKRWLRLKLDKYDNIVMVGLKYERLPEFCYVCGRIGHASKDCSDD 166

[Close]

BLAST of Lag0017956 vs. ExPASy TrEMBL
Match: A0A2P5EHV3 (Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_190670 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-10
Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = 0


Query: 141 LRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLE 200
           LRV+V+I+  +PL+ G  V+ GS     W+   YEK+P+FC+YCGR+GH V+ C EEG E
Sbjct: 7   LRVRVKIDILKPLRIGAKVRVGSSGPLIWVDFKYEKIPDFCFYCGRVGHSVNYCPEEGSE 66

Query: 201 ---KNKEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPRGRGRGFFWRGAREDINLNES 260
              +  +  +   LR ++ +K F K   +  K  G +G R  G G     A ++I   E 
Sbjct: 67  VMLQKGQFQYREWLRGSSSNKLFSKDITTGRK--GNKGLRSLGLGELPEHAGKEIGAAEL 126

Query: 261 YEEKNGTADTQSNIRKGSNSKLEEEDNR 286
             EK       S  R  SN+    ED++
Sbjct: 127 TGEKTTQLVAASTSRVLSNNSAANEDDK 152

[Close]

BLAST of Lag0017956 vs. ExPASy TrEMBL
Match: A0A5C7ICF7 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_008043 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.4e-10
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 0


Query: 57  DMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIW 116
           D+  L E L L +ED+ V+E+ +E   +   D +  +  K+L+ K IN E F   + ++ 
Sbjct: 5   DISVLCENLSLADEDEAVLEMAEEVKSDGVGDVDRCLVGKVLSGKKINIEAFKEQLGEV- 64

Query: 117 GIEGVVKVSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYE 176
                  + L  +S   +    G+ +RVKVRI+  + LKR   +K G   E   + + YE
Sbjct: 65  -------IELPAESRECW----GKFMRVKVRIDISKALKRWLKLKLGKSEEVTTLTLKYE 124

Query: 177 KLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNGSKGFYKSWRSDFK 230
           +L  FCY CG++GH + EC +E   K            +    G Y SW S  K
Sbjct: 125 RLLEFCYTCGKIGHGIRECQDEVARKASITD------RSKPRSGSYNSWNSSEK 160

The following BLAST results are available for this feature:

BLAST of Lag0017956 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG54824.1	1.9e-12	30.26	hypothetical protein EZV62_020080 [Acer yangbiense]	[more]
KAA0046998.1	1.2e-11	42.19	reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta...	[more]
TXG48912.1	6.7e-10	28.92	hypothetical protein EZV62_024787 [Acer yangbiense]	[more]
PON85093.1	6.7e-10	35.14	Zinc knuckle CX2CX4HX4C [Trema orientale]	[more]
KAE8772589.1	1.9e-09	46.15	hypothetical protein D1007_55405 [Hordeum vulgare]	[more]

BLAST of Lag0017956 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017956 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7HCW1	9.1e-13	30.26	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02008...	[more]
A0A5D3C0K2	5.9e-12	42.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68...	[more]
A0A5C7GX56	3.2e-10	28.92	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02478...	[more]
A0A2P5EHV3	3.2e-10	35.14	Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_190670 PE=4 SV...	[more]
A0A5C7ICF7	9.4e-10	30.46	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00804...	[more]

BLAST of Lag0017956 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 151..195 e-value: 4.9E-13 score: 48.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..386
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 372..386
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..305
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 181..196 score: 9.405477

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017956.1	Lag0017956.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding